HIPPOCAMPAL FORMATION - Expression summary
Mouse brain, Intensity
Hippocampal formationi 		96.495
Protein expressioni No data
RNA expressioni
Consensus:10.2 nTPM
HPA Brain:37.2 nTPM
GTEx:10.2 nTPM
FANTOM5:54.1 Scaled Tags Per Million
Pig:52.8 nTPM
Mouse:50.8 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA068389
Hippocampal formation mean intensity 96.495
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 70.328
Molecular layer of the dentate gyrus 60.805
Granular dentate gyrus 85.751
CA1 - oriens layer 66.705
CA1 - pyramidal layer 92.434
CA1 - radiatum layer 70.994
CA2 - oriens layer 62.365
CA2 - pyramidal layer 96.495
CA2 - radiatum layer 72.468
CA3 - oriens layer 82.980
CA3 - pyramidal layer 85.505
CA3 - radiatum layer 77.013
Stratum lucidum 61.955
Lacunosum moleculare 46.668
Subiculum 41.625

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 37.2
Sample id Sample description nTPM
Hippocampus
nTPM: 25.0
1898 Male, age 80, left hemisphere 40.0
2529 Female, age 94, left hemisphere 29.3
1911 Female, age 85, right hemisphere 26.5
2621 Female, age 67, right hemisphere 23.9
1855 Male, age 76, left hemisphere 16.6
2148 Female, age 91, left hemisphere 13.6
Dentate gyrus
nTPM: 16.9
2246 Female, age 85, both hemispheres 29.5
2531 Female, age 67, both hemispheres 15.5
1927 Female, age 91, both hemispheres 15.3
2528 Male, age 74, both hemispheres 15.3
2010 Male, age 76, both hemispheres 13.2
2530 Female, age 94, left hemisphere 12.5
Entorhinal gyrus
nTPM: 30.1
1938 Female, age 85, left hemisphere 40.7
2613 Female, age 94, left hemisphere 34.7
2764 Male, age 80, right hemisphere 30.3
1787 Male, age 76, left hemisphere 29.2
2686 Male, age 75, right hemisphere 27.0
2117 Female, age 91, right hemisphere 18.5
Hippocampus, CA1
nTPM: 21.2
2527 Male, age 74, both hemispheres 27.2
2749 Male, age 80, left hemisphere 25.0
2082 Female, age 91, right hemisphere 23.7
1873 Female, age 85, both hemispheres 18.3
2045 Male, age 76, both hemispheres 11.8
Hippocampus, CA2
nTPM: 28.9
1892 Male, age 76, both hemispheres 77.0
2437 Female, age 94, left hemisphere 25.9
2113 Female, age 91, right hemisphere 22.1
2249 Male, age 74, both hemispheres 19.6
1940 Female, age 85, left hemisphere 15.9
1963 Male, age 80, left hemisphere 12.7
Hippocampus, CA3
nTPM: 31.6
1867 Male, age 76, both hemispheres 65.4
1891 Female, age 85, both hemispheres 46.5
2137 Male, age 80, left hemisphere 28.3
2436 Male, age 74, both hemispheres 22.1
2861 Female, age 67, both hemispheres 16.7
2620 Female, age 94, left hemisphere 10.4
Parahippocampal cortex
nTPM: 32.3
1850 Male, age 80, both hemispheres 45.1
1933 Female, age 85, both hemispheres 42.8
1990 Female, age 91, right hemisphere 36.5
2250 Female, age 67, right hemisphere 36.5
2692 Male, age 74, both hemispheres 30.5
2245 Female, age 91, both hemispheres 28.7
2693 Female, age 94, both hemispheres 28.2
2018 Male, age 76, both hemispheres 27.3
2622 Female, age 67, right hemisphere 24.6
2532 Female, age 72, left hemisphere 22.8
Perirhinal gyrus
nTPM: 37.2
1847 Female, age 91, left hemisphere 63.7
1841 Female, age 85, right hemisphere 32.0
2848 Male, age 76, right hemisphere 31.6
2521 Female, age 94, right hemisphere 30.3
1794 Male, age 80, right hemisphere 28.2
Subiculum
nTPM: 34.2
2438 Female, age 94, left hemisphere 50.6
1901 Male, age 80, both hemispheres 49.4
1977 Female, age 85, both hemispheres 40.4
2619 Male, age 74, both hemispheres 28.3
2729 Female, age 91, right hemisphere 18.4
2042 Male, age 76, both hemispheres 18.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 10.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.2
Samples: 197

Max nTPM: 54.7
Min nTPM: 2.1
Std nTPM: 7.5
Median nTPM: 8.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 54.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 47.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 46.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 41.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 39.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 36.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 29.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 26.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 23.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 22.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 21.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.1
FF:10169-103B7 60 years, female 60.2
FF:10153-102I9 76 years, female 48.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 52.8
Pig sample Sample description nTPM
Subiculum
nTPM: 44.8
Samples: 4

Max nTPM: 54.9
Min nTPM: 35.8
Sample A Female 42.6
Sample B Female 35.8
Sample C Male 54.9
Sample D Male 45.9
Dorsal hippocampus
nTPM: 47.8
Samples: 4

Max nTPM: 106.2
Min nTPM: 20.2
Sample A Female 34.8
Sample B Female 30.0
Sample C Male 106.2
Sample D Male 20.2
Entorhinal cortex
nTPM: 28.2
Samples: 4

Max nTPM: 31.1
Min nTPM: 26.2
Sample A Female 26.3
Sample B Female 26.2
Sample C Male 29.3
Sample D Male 31.1
Ventral hippocampus
nTPM: 52.8
Samples: 4

Max nTPM: 78.2
Min nTPM: 37.1
Sample A Female 48.0
Sample B Female 37.1
Sample C Male 78.2
Sample D Male 47.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 50.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.7
Samples: 4

Max nTPM: 58.3
Min nTPM: 38.3
Sample A Male 58.3
Sample B Male 38.3
Sample C Female 50.3
Sample D Female 56.0
Hippocampal formation
nTPM: 41.2
Samples: 4

Max nTPM: 48.7
Min nTPM: 35.6
Sample A Male 42.7
Sample B Male 48.7
Sample C Female 35.6
Sample D Female 37.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69201600 Antisense, RP_050317_03_C03, Mouse strain C57BL/6J (56 days, male) 4.7
72119595 Antisense, RP_051017_04_A09, Mouse strain C57BL/6J (56 days, male) 3.4
73512203 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 3.1
70919573 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 3.0

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