We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RALA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RALA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
76.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
60.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
52.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
47.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
45.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
30.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
0.9
227
Tumor
0.8
911
Tumor
0.7
363
Tumor
0.5
685
Tumor
0.5
743
Tumor
0.4
741
Tumor
0.4
713
Tumor
0.4
491
Tumor
0.4
537
Tumor
0.4
283
Tumor
0.4
536
Normal
0.3
977
Tumor
0.3
967
Tumor
0.3
478
Normal
0.3
311
Tumor
0.3
915
Tumor
0.3
957
Tumor
0.3
344
Normal
0.3
686
Normal
0.3
1014
Normal
0.3
1044
Normal
0.3
1025
Tumor
0.3
472
Normal
0.3
984
Normal
0.3
342
Normal
0.3
488
Normal
0.3
954
Normal
0.3
665
Tumor
0.3
448
Normal
0.3
983
Tumor
0.3
483
Tumor
0.3
353
Tumor
0.3
723
Tumor
0.3
746
Normal
0.2
742
Normal
0.2
278
Normal
0.2
445
Tumor
0.2
312
Normal
0.2
944
Normal
0.2
755
Tumor
0.2
817
Tumor
0.2
314
Normal
0.2
261
Tumor
0.2
778
Normal
0.2
738
Normal
0.2
412
Normal
0.2
722
Normal
0.2
328
Normal
0.2
538
Normal
0.2
1022
Normal
0.2
455
Tumor
0.2
716
Normal
0.2
1032
Normal
0.2
866
Normal
0.2
697
Tumor
0.2
494
Normal
0.2
851
Tumor
0.2
785
Tumor
0.2
874
Normal
0.2
867
Tumor
0.2
958
Normal
0.2
212
Normal
0.2
968
Normal
0.2
917
Tumor
0.2
938
Normal
0.2
696
Normal
0.2
535
Tumor
0.2
924
Normal
0.2
546
Normal
0.2
364
Normal
0.2
482
Normal
0.2
976
Normal
0.2
498
Normal
0.2
534
Normal
0.2
824
Normal
0.2
786
Normal
0.2
228
Normal
0.2
965
Tumor
0.2
956
Normal
0.2
698
Normal
0.2
1046
Normal
0.2
192
Normal
0.2
921
Tumor
0.2
416
Normal
0.2
714
Normal
0.2
744
Normal
0.2
1013
Tumor
0.2
1015
Tumor
0.2
425
Tumor
0.2
298
Normal
0.1
356
Normal
0.1
518
Normal
0.1
341
Tumor
0.1
728
Normal
0.1
815
Tumor
0.1
426
Normal
0.1
131
Tumor
0.1
354
Normal
0.1
952
Normal
0.1
484
Normal
0.1
571
Tumor
0.1
211
Tumor
0.1
916
Normal
0.1
648
Normal
0.1
964
Normal
0.1
388
Normal
0.1
914
Normal
0.1
514
Normal
0.1
1028
Normal
0.1
573
Tumor
0.1
982
Normal
0.1
816
Normal
0.1
422
Normal
0.1
462
Normal
0.1
727
Tumor
0.1
878
Normal
0.1
868
Normal
0.1
148
Normal
0.1
852
Normal
0.1
447
Tumor
0.1
864
Normal
0.1
671
Tumor
0.1
368
Normal
0.1
415
Tumor
0.1
385
Tumor
0.1
882
Normal
0.1
715
Tumor
0.1
528
Normal
0.1
978
Normal
0.1
456
Normal
0.1
664
Normal
0.1
937
Tumor
0.1
474
Normal
0.1
616
Normal
0.1
877
Tumor
0.1
981
Tumor
0.1
487
Tumor
0.1
618
Normal
0.1
526
Normal
0.1
553
Tumor
0.1
492
Normal
0.1
721
Tumor
0.1
881
Tumor
0.1
922
Normal
0.1
724
Normal
0.1
963
Tumor
0.1
884
Normal
0.1
481
Tumor
0.1
913
Tumor
0.1
862
Normal
0.1
125
Tumor
0.1
432
Normal
0.1
132
Normal
0.1
966
Normal
0.1
271
Tumor
0.1
516
Normal
0.1
861
Tumor
0.1
358
Normal
0.1
1045
Tumor
0.1
352
Normal
0.1
572
Normal
0.1
642
Normal
0.1
428
Normal
0.1
376
Normal
0.1
1021
Tumor
0.1
513
Tumor
0.1
386
Normal
0.1
672
Normal
0.1
286
Normal
0.1
955
Tumor
0.1
435
Tumor
0.1
617
Tumor
0.1
1042
Normal
0.1
394
Normal
0.1
975
Tumor
0.1
628
Normal
0.1
1016
Normal
0.1
331
Tumor
0.0
142
Normal
0.0
162
Normal
0.0
568
Normal
0.0
172
Normal
0.0
332
Normal
0.0
186
Normal
0.0
284
Normal
0.0
391
Tumor
0.0
297
Tumor
0.0
471
Tumor
0.0
524
Normal
0.0
912
Normal
0.0
424
Normal
0.0
873
Tumor
0.0
443
Tumor
0.0
136
Normal
0.0
943
Tumor
0.0
436
Normal
0.0
926
Normal
0.0
185
Tumor
0.0
196
Normal
0.0
138
Normal
0.0
444
Normal
0.0
525
Tumor
0.0
375
Tumor
0.0
563
Tumor
0.0
224
Normal
0.0
918
Normal
0.0
636
Normal
0.0
564
Normal
0.0
187
Tumor
0.0
1031
Tumor
0.0
558
Normal
0.0
351
Tumor
0.0
272
Normal
0.0
1027
Tumor
0.0
268
Normal
0.0
627
Tumor
0.0
396
Normal
0.0
392
Normal
0.0
128
Normal
0.0
554
Normal
0.0
222
Normal
0.0
756
Normal
0.0
223
Tumor
0.0
647
Tumor
0.0
146
Normal
0.0
666
Normal
0.0
925
Tumor
0.0
517
Tumor
0.0
745
Tumor
0.0
1026
Normal
0.0
662
Normal
0.0
313
Tumor
0.0
258
Normal
0.0
414
Normal
0.0
262
Normal
0.0
446
Normal
0.0
343
Tumor
0.0
191
Tumor
0.0
813
Tumor
0.0
367
Tumor
0.0
574
Normal
0.0
232
Normal
0.0
863
Tumor
-0.1
466
Normal
-0.1
411
Tumor
-0.1
434
Normal
-0.1
218
Normal
-0.1
126
Normal
-0.1
464
Normal
-0.1
362
Normal
-0.1
452
Normal
-0.1
737
Tumor
-0.1
814
Normal
-0.1
221
Tumor
-0.1
111
Normal
-0.1
124
Normal
-0.1
188
Normal
-0.1
217
Tumor
-0.1
366
Normal
-0.1
615
Tumor
-0.1
137
Tumor
-0.1
777
Tumor
-0.1
214
Normal
-0.1
923
Tumor
-0.1
473
Tumor
-0.1
818
Normal
-0.1
114
Normal
-0.1
431
Tumor
-0.1
387
Tumor
-0.1
823
Tumor
-0.1
527
Tumor
-0.1
145
Tumor
-0.1
355
Tumor
-0.1
384
Normal
-0.1
951
Tumor
-0.1
953
Tumor
-0.1
395
Tumor
-0.1
858
Normal
-0.1
433
Tumor
-0.1
468
Normal
-0.1
213
Tumor
-0.1
635
Tumor
-0.1
477
Tumor
-0.1
127
Tumor
-0.1
171
Tumor
-0.2
1043
Tumor
-0.2
421
Tumor
-0.2
533
Tumor
-0.2
147
Tumor
-0.2
285
Tumor
-0.2
327
Tumor
-0.2
641
Tumor
-0.2
493
Tumor
-0.2
257
Tumor
-0.2
523
Tumor
-0.2
413
Tumor
-0.2
277
Tumor
-0.2
515
Tumor
-0.2
695
Tumor
-0.2
461
Tumor
-0.2
423
Tumor
-0.2
467
Tumor
-0.2
545
Tumor
-0.2
497
Tumor
-0.2
463
Tumor
-0.2
357
Tumor
-0.3
123
Tumor
-0.3
365
Tumor
-0.3
557
Tumor
-0.3
195
Tumor
-0.3
567
Tumor
-0.3
135
Tumor
-0.3
465
Tumor
-0.3
857
Tumor
-0.3
883
Tumor
-0.4
427
Tumor
-0.4
141
Tumor
-0.4
267
Tumor
-0.4
383
Tumor
-0.4
393
Tumor
-0.4
663
Tumor
-0.4
451
Tumor
-0.4
865
Tumor
-0.4
231
Tumor
-0.4
113
Tumor
-0.5
661
Tumor
-0.5
361
Tumor
-0.5
161
Tumor
-0.5
112
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
