HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:29.5 nTPM
GTEx:12.8 nTPM
FANTOM5:9.1 Scaled Tags Per Million
Pig:1.0 nTPM
Mouse:21.1 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041493Antibody HPA041793
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 29.5
Sample id Sample description nTPM
Hippocampus
nTPM: 11.2
2529 Female, age 94, left hemisphere 18.1
1911 Female, age 85, right hemisphere 15.7
2621 Female, age 67, right hemisphere 10.2
1898 Male, age 80, left hemisphere 8.4
2148 Female, age 91, left hemisphere 7.9
1855 Male, age 76, left hemisphere 7.0
Dentate gyrus
nTPM: 17.3
2246 Female, age 85, both hemispheres 27.1
2010 Male, age 76, both hemispheres 25.5
2528 Male, age 74, both hemispheres 22.2
1927 Female, age 91, both hemispheres 10.4
2531 Female, age 67, both hemispheres 9.7
2530 Female, age 94, left hemisphere 8.7
Entorhinal gyrus
nTPM: 14.5
2117 Female, age 91, right hemisphere 25.1
2686 Male, age 75, right hemisphere 18.0
1787 Male, age 76, left hemisphere 14.8
1938 Female, age 85, left hemisphere 11.5
2613 Female, age 94, left hemisphere 9.2
2764 Male, age 80, right hemisphere 8.5
Hippocampus, CA1
nTPM: 14.0
2082 Female, age 91, right hemisphere 28.4
2045 Male, age 76, both hemispheres 19.0
1873 Female, age 85, both hemispheres 14.1
2527 Male, age 74, both hemispheres 7.8
2749 Male, age 80, left hemisphere 0.9
Hippocampus, CA2
nTPM: 17.5
2249 Male, age 74, both hemispheres 32.3
2437 Female, age 94, left hemisphere 21.4
1940 Female, age 85, left hemisphere 18.9
2113 Female, age 91, right hemisphere 16.6
1892 Male, age 76, both hemispheres 12.1
1963 Male, age 80, left hemisphere 3.9
Hippocampus, CA3
nTPM: 10.9
2436 Male, age 74, both hemispheres 16.2
1867 Male, age 76, both hemispheres 13.0
2620 Female, age 94, left hemisphere 11.5
1891 Female, age 85, both hemispheres 10.5
2137 Male, age 80, left hemisphere 8.3
2861 Female, age 67, both hemispheres 5.8
Parahippocampal cortex
nTPM: 20.1
2250 Female, age 67, right hemisphere 34.5
2622 Female, age 67, right hemisphere 24.0
2245 Female, age 91, both hemispheres 21.7
2693 Female, age 94, both hemispheres 21.7
1933 Female, age 85, both hemispheres 20.1
2692 Male, age 74, both hemispheres 18.8
1990 Female, age 91, right hemisphere 17.1
2018 Male, age 76, both hemispheres 15.2
2532 Female, age 72, left hemisphere 15.0
1850 Male, age 80, both hemispheres 12.7
Perirhinal gyrus
nTPM: 29.5
2521 Female, age 94, right hemisphere 44.0
1841 Female, age 85, right hemisphere 32.1
1847 Female, age 91, left hemisphere 28.4
1794 Male, age 80, right hemisphere 22.9
2848 Male, age 76, right hemisphere 20.1
Subiculum
nTPM: 16.3
2619 Male, age 74, both hemispheres 31.0
2438 Female, age 94, left hemisphere 24.7
1977 Female, age 85, both hemispheres 17.7
2729 Female, age 91, right hemisphere 9.6
2042 Male, age 76, both hemispheres 9.0
1901 Male, age 80, both hemispheres 5.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.8
Samples: 197

Max nTPM: 65.8
Min nTPM: 0.2
Std nTPM: 12.8
Median nTPM: 8.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 65.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 62.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 60.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 55.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 55.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 49.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 49.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 49.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 45.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 43.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 41.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.1
FF:10153-102I9 76 years, female 14.0
FF:10169-103B7 60 years, female 4.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 1.0
Pig sample Sample description nTPM
Subiculum
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.7
Sample B Female 0.4
Sample C Male 0.3
Sample D Male 0.4
Dorsal hippocampus
nTPM: 1.0
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.4
Sample A Female 1.5
Sample B Female 0.9
Sample C Male 0.4
Sample D Male 1.2
Entorhinal cortex
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.7
Sample B Female 0.3
Sample C Male 0.4
Sample D Male 0.4
Ventral hippocampus
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.6
Sample C Male 0.9
Sample D Male 0.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 21.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.6
Samples: 4

Max nTPM: 8.8
Min nTPM: 0.8
Sample A Male 6.1
Sample B Male 0.8
Sample C Female 8.8
Sample D Female 2.5
Hippocampal formation
nTPM: 21.1
Samples: 4

Max nTPM: 30.2
Min nTPM: 15.9
Sample A Male 15.9
Sample B Male 30.2
Sample C Female 18.3
Sample D Female 19.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69608064 Antisense, RP_050426_03_D09, Mouse strain C57BL/6J (56 days, male) 3.3
72283808 Antisense, RP_051027_01_C03, Mouse strain C57BL/6J (56 days, male) 2.8

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