MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.8 nTPM
HPA Brain:49.1 nTPM
GTEx:40.8 nTPM
FANTOM5:94.8 Scaled Tags Per Million
Pig:68.9 nTPM
Mouse:266.6 nTPM
Allen mouse:19.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.2
2019 Male, age 18, unknown 56.5
2586 Male, age 75, left hemisphere 52.4
1833 Male, age 53, unknown 46.1
1830 Male, age 51, unknown 44.5
1870 Female, age 42, unknown 41.6
2411 Female, age 72, unknown 41.5
2666 Male, age 74, left hemisphere 38.7
2219 Male, age 76, both hemispheres 37.9
2828 Female, age 72, unknown 37.4
1827 Male, age 72, unknown 35.6
Dorsal raphe nucleus
nTPM: 32.7
2750 Male, age 76, both hemispheres 36.9
1828 Male, age 53, unknown 34.8
2016 Female, age 72, unknown 31.3
2298 Female, age 72, unknown 30.9
2047 Male, age 72, unknown 29.8
Inferior colliculus
nTPM: 38.8
2097 Female, age 72, unknown 40.6
1848 Female, age 42, unknown 38.7
1890 Male, age 53, unknown 38.0
2849 Male, age 72, unknown 37.8
Median raphe nucleus
nTPM: 30.1
2220 Male, age 76, midline 30.1
Periaquaductal grey, anterior
nTPM: 33.9
2502 Female, age 75, unknown 38.5
1947 Male, age 18, unknown 34.0
1795 Male, age 51, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 29.9
2464 Female, age 72, unknown 38.0
1831 Male, age 72, unknown 28.8
1840 Male, age 53, unknown 28.1
2850 Male, age 76, both hemispheres 24.5
Periaquaductal grey, lateral
nTPM: 28.6
2272 Male, age 74, both hemispheres 32.5
2053 Male, age 18, unknown 30.1
2140 Male, age 76, both hemispheres 23.1
Pretectal area
nTPM: 38.0
1817 Female, age 42, unknown 50.3
2007 Male, age 72, unknown 48.7
1815 Male, age 53, unknown 45.4
1944 Female, age 72, unknown 42.5
1816 Male, age 51, unknown 40.3
2407 Male, age 75, both hemispheres 38.0
2667 Female, age 75, unknown 34.2
2316 Male, age 76, right hemisphere 31.6
2825 Male, age 18, unknown 30.7
2273 Male, age 74, both hemispheres 29.2
2224 Female, age 72, unknown 27.1
Red nucleus
nTPM: 49.1
1865 Male, age 51, unknown 55.0
1904 Male, age 53, unknown 54.2
2785 Male, age 18, unknown 53.8
1954 Female, age 42, unknown 53.3
1821 Female, age 72, unknown 51.3
2503 Female, age 72, unknown 50.1
2725 Female, age 75, unknown 49.5
2769 Male, age 72, unknown 47.4
2588 Male, age 74, left hemisphere 46.8
2227 Male, age 72, unknown 46.7
2584 Male, age 75, left hemisphere 42.6
2823 Male, age 76, right hemisphere 38.7
Substantia nigra
nTPM: 43.7
2241 Male, age 72, unknown 49.4
2409 Female, age 72, unknown 48.8
2583 Male, age 75, right hemisphere 48.4
1851 Male, age 51, unknown 46.8
1889 Female, age 72, unknown 45.0
1916 Female, age 42, unknown 43.3
2665 Male, age 74, both hemispheres 42.0
1941 Male, age 53, unknown 39.2
2699 Male, age 18, unknown 37.3
2590 Female, age 75, unknown 36.7
Superior colliculus
nTPM: 40.2
2664 Male, age 75, both hemispheres 46.2
2668 Female, age 75, unknown 44.8
2087 Female, age 72, unknown 43.0
1913 Female, age 42, unknown 42.3
1995 Male, age 72, unknown 40.0
1839 Male, age 51, unknown 38.1
2587 Male, age 74, left hemisphere 38.0
1895 Male, age 76, right hemisphere 37.5
2261 Male, age 18, unknown 36.4
1796 Male, age 53, unknown 36.2
Ventral tegmental area
nTPM: 37.6
2410 Female, age 72, unknown 49.0
1915 Female, age 42, unknown 38.3
2223 Female, age 72, unknown 37.7
2218 Male, age 76, both hemispheres 36.3
1942 Male, age 51, unknown 33.0
2021 Male, age 53, unknown 31.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.8
Samples: 139

Max nTPM: 67.7
Min nTPM: 25.8
Std nTPM: 7.5
Median nTPM: 39.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 67.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 67.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 62.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 56.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 54.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 53.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 53.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 53.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.8
FF:10158-103A5 76 years, female 94.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.6
Samples: 4

Max nTPM: 57.3
Min nTPM: 44.5
Sample A Female 56.6
Sample B Female 48.0
Sample C Male 44.5
Sample D Male 57.3
Midbrain
nTPM: 65.5
Samples: 4

Max nTPM: 85.8
Min nTPM: 49.6
Sample A Female 60.5
Sample B Female 66.1
Sample C Male 85.8
Sample D Male 49.6
Periaqueductal gray
nTPM: 47.7
Samples: 3

Max nTPM: 62.0
Min nTPM: 39.2
Sample B Female 62.0
Sample C Male 41.8
Sample D Male 39.2
Superior colliculi
nTPM: 68.9
Samples: 4

Max nTPM: 86.9
Min nTPM: 59.4
Sample A Female 66.7
Sample B Female 59.4
Sample C Male 86.9
Sample D Male 62.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 266.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.6
Samples: 4

Max nTPM: 279.6
Min nTPM: 248.3
Sample A Male 248.3
Sample B Male 265.7
Sample C Female 272.8
Sample D Female 279.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 19.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.6
356858 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 19.6
68192994 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 18.1

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