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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CROT is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
91.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
84.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
53.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
41.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
38.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CROT is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.3
Number of samples
231
Samples
Sample
Description
TPM
DO23552
0 years, female, NA, stage:1, alive, 810 days
77.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
58.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
46.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
41.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
36.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
2.2
411
Tumor
1.9
851
Tumor
1.7
435
Tumor
1.7
1013
Tumor
1.6
957
Tumor
1.6
483
Tumor
1.6
727
Tumor
1.5
341
Tumor
1.4
641
Tumor
1.4
1031
Tumor
1.4
537
Tumor
1.3
1021
Tumor
1.3
937
Tumor
1.3
471
Tumor
1.3
171
Tumor
1.2
271
Tumor
1.1
647
Tumor
1.1
571
Tumor
1.0
113
Tumor
1.0
147
Tumor
1.0
517
Tumor
0.9
131
Tumor
0.9
223
Tumor
0.8
465
Tumor
0.8
921
Tumor
0.8
257
Tumor
0.8
963
Tumor
0.8
883
Tumor
0.8
1025
Tumor
0.8
785
Tumor
0.7
261
Tumor
0.7
477
Tumor
0.7
967
Tumor
0.7
393
Tumor
0.7
1043
Tumor
0.7
923
Tumor
0.6
221
Tumor
0.6
925
Tumor
0.6
137
Tumor
0.6
227
Tumor
0.5
123
Tumor
0.5
713
Tumor
0.5
965
Tumor
0.5
195
Tumor
0.4
1027
Tumor
0.4
412
Normal
0.4
277
Tumor
0.3
357
Tumor
0.3
481
Tumor
0.3
231
Tumor
0.3
355
Tumor
0.3
975
Tumor
0.3
363
Tumor
0.3
185
Tumor
0.3
742
Normal
0.3
1045
Tumor
0.2
553
Tumor
0.2
413
Tumor
0.2
356
Normal
0.2
617
Tumor
0.2
527
Tumor
0.2
186
Normal
0.2
533
Tumor
0.2
436
Normal
0.2
327
Tumor
0.2
951
Tumor
0.2
353
Tumor
0.1
433
Tumor
0.1
615
Tumor
0.1
358
Normal
0.1
445
Tumor
0.1
755
Tumor
0.1
258
Normal
0.1
563
Tumor
0.1
815
Tumor
0.1
364
Normal
0.1
534
Normal
0.1
443
Tumor
0.1
494
Normal
0.1
466
Normal
0.0
431
Tumor
0.0
313
Tumor
0.0
964
Normal
0.0
1042
Normal
0.0
365
Tumor
0.0
473
Tumor
0.0
881
Tumor
0.0
572
Normal
0.0
111
Normal
0.0
446
Normal
0.0
136
Normal
0.0
618
Normal
0.0
127
Tumor
0.0
1032
Normal
0.0
944
Normal
0.0
128
Normal
0.0
525
Tumor
0.0
285
Tumor
0.0
172
Normal
0.0
862
Normal
0.0
388
Normal
0.0
737
Tumor
-0.1
628
Normal
-0.1
922
Normal
-0.1
1016
Normal
-0.1
515
Tumor
-0.1
314
Normal
-0.1
278
Normal
-0.1
982
Normal
-0.1
124
Normal
-0.1
448
Normal
-0.1
376
Normal
-0.1
518
Normal
-0.1
387
Tumor
-0.1
978
Normal
-0.1
546
Normal
-0.1
738
Normal
-0.1
528
Normal
-0.1
721
Tumor
-0.1
722
Normal
-0.1
187
Tumor
-0.1
938
Normal
-0.1
148
Normal
-0.1
328
Normal
-0.1
884
Normal
-0.1
716
Normal
-0.1
452
Normal
-0.1
514
Normal
-0.1
132
Normal
-0.1
523
Tumor
-0.2
857
Tumor
-0.2
913
Tumor
-0.2
232
Normal
-0.2
568
Normal
-0.2
421
Tumor
-0.2
286
Normal
-0.2
665
Tumor
-0.2
866
Normal
-0.2
741
Tumor
-0.2
114
Normal
-0.2
354
Normal
-0.2
196
Normal
-0.2
424
Normal
-0.2
745
Tumor
-0.2
214
Normal
-0.2
953
Tumor
-0.2
926
Normal
-0.2
852
Normal
-0.2
472
Normal
-0.2
272
Normal
-0.2
484
Normal
-0.2
635
Tumor
-0.2
414
Normal
-0.2
415
Tumor
-0.2
554
Normal
-0.2
864
Normal
-0.2
564
Normal
-0.2
882
Normal
-0.2
516
Normal
-0.2
724
Normal
-0.2
696
Normal
-0.2
981
Tumor
-0.2
126
Normal
-0.2
362
Normal
-0.3
463
Tumor
-0.3
873
Tumor
-0.3
267
Tumor
-0.3
138
Normal
-0.3
455
Tumor
-0.3
977
Tumor
-0.3
723
Tumor
-0.3
142
Normal
-0.3
162
Normal
-0.3
868
Normal
-0.3
332
Normal
-0.3
664
Normal
-0.3
212
Normal
-0.3
125
Tumor
-0.3
914
Normal
-0.3
858
Normal
-0.3
416
Normal
-0.3
361
Tumor
-0.3
423
Tumor
-0.3
818
Normal
-0.3
954
Normal
-0.3
918
Normal
-0.3
958
Normal
-0.3
394
Normal
-0.3
1022
Normal
-0.3
567
Tumor
-0.3
474
Normal
-0.3
262
Normal
-0.3
135
Tumor
-0.3
662
Normal
-0.3
636
Normal
-0.4
666
Normal
-0.4
141
Tumor
-0.4
642
Normal
-0.4
422
Normal
-0.4
1028
Normal
-0.4
222
Normal
-0.4
984
Normal
-0.4
912
Normal
-0.4
482
Normal
-0.4
817
Tumor
-0.4
686
Normal
-0.4
432
Normal
-0.4
715
Tumor
-0.4
648
Normal
-0.4
342
Normal
-0.4
976
Normal
-0.4
616
Normal
-0.4
368
Normal
-0.4
396
Normal
-0.4
728
Normal
-0.4
384
Normal
-0.4
1026
Normal
-0.4
743
Tumor
-0.4
462
Normal
-0.4
352
Normal
-0.4
756
Normal
-0.4
786
Normal
-0.4
955
Tumor
-0.4
312
Normal
-0.4
661
Tumor
-0.4
526
Normal
-0.5
545
Tumor
-0.5
391
Tumor
-0.5
952
Normal
-0.5
824
Normal
-0.5
224
Normal
-0.5
911
Tumor
-0.5
574
Normal
-0.5
161
Tumor
-0.5
297
Tumor
-0.5
956
Normal
-0.5
468
Normal
-0.5
968
Normal
-0.5
538
Normal
-0.5
351
Tumor
-0.5
924
Normal
-0.5
217
Tumor
-0.5
983
Tumor
-0.5
456
Normal
-0.5
558
Normal
-0.5
467
Tumor
-0.5
367
Tumor
-0.5
386
Normal
-0.5
344
Normal
-0.5
816
Normal
-0.5
627
Tumor
-0.5
366
Normal
-0.6
878
Normal
-0.6
478
Normal
-0.6
284
Normal
-0.6
966
Normal
-0.6
434
Normal
-0.6
1014
Normal
-0.6
877
Tumor
-0.6
874
Normal
-0.6
146
Normal
-0.6
145
Tumor
-0.6
298
Normal
-0.6
428
Normal
-0.6
218
Normal
-0.6
188
Normal
-0.6
698
Normal
-0.6
916
Normal
-0.7
191
Tumor
-0.7
535
Tumor
-0.7
1044
Normal
-0.7
524
Normal
-0.7
112
Tumor
-0.7
778
Normal
-0.7
777
Tumor
-0.7
375
Tumor
-0.7
1046
Normal
-0.7
573
Tumor
-0.7
464
Normal
-0.7
823
Tumor
-0.8
268
Normal
-0.8
444
Normal
-0.8
491
Tumor
-0.8
493
Tumor
-0.8
714
Normal
-0.8
672
Normal
-0.8
192
Normal
-0.8
426
Normal
-0.8
228
Normal
-0.8
461
Tumor
-0.8
492
Normal
-0.9
488
Normal
-0.9
744
Normal
-0.9
392
Normal
-0.9
213
Tumor
-0.9
1041
Tumor
-0.9
861
Tumor
-0.9
425
Tumor
-1.0
865
Tumor
-1.0
451
Tumor
-1.0
915
Tumor
-1.0
487
Tumor
-1.0
863
Tumor
-1.0
746
Normal
-1.1
497
Tumor
-1.1
513
Tumor
-1.1
383
Tumor
-1.1
917
Tumor
-1.1
283
Tumor
-1.1
447
Tumor
-1.2
331
Tumor
-1.2
395
Tumor
-1.2
311
Tumor
-1.2
867
Tumor
-1.2
557
Tumor
-1.2
536
Normal
-1.2
343
Tumor
-1.3
663
Tumor
-1.3
697
Tumor
-1.3
385
Tumor
-1.3
1015
Tumor
-1.4
498
Normal
-1.4
671
Tumor
-1.4
685
Tumor
-1.5
427
Tumor
-1.5
943
Tumor
-1.6
211
Tumor
-1.7
814
Normal
-1.8
813
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
