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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GCFC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
32.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.1
965
Tumor
1.0
473
Tumor
0.9
815
Tumor
0.8
743
Tumor
0.7
615
Tumor
0.7
1013
Tumor
0.7
465
Tumor
0.7
313
Tumor
0.7
463
Tumor
0.7
477
Tumor
0.6
983
Tumor
0.6
443
Tumor
0.6
285
Tumor
0.6
391
Tumor
0.6
517
Tumor
0.6
367
Tumor
0.6
616
Normal
0.5
221
Tumor
0.5
357
Tumor
0.5
951
Tumor
0.5
353
Tumor
0.5
431
Tumor
0.5
567
Tumor
0.5
925
Tumor
0.5
331
Tumor
0.5
877
Tumor
0.4
451
Tumor
0.4
663
Tumor
0.4
923
Tumor
0.4
123
Tumor
0.4
261
Tumor
0.4
957
Tumor
0.4
1021
Tumor
0.4
977
Tumor
0.4
937
Tumor
0.4
523
Tumor
0.4
413
Tumor
0.4
953
Tumor
0.4
921
Tumor
0.4
112
Tumor
0.4
533
Tumor
0.4
817
Tumor
0.4
464
Normal
0.4
745
Tumor
0.4
641
Tumor
0.4
297
Tumor
0.4
873
Tumor
0.4
351
Tumor
0.3
213
Tumor
0.3
425
Tumor
0.3
481
Tumor
0.3
445
Tumor
0.3
695
Tumor
0.3
883
Tumor
0.3
661
Tumor
0.3
527
Tumor
0.3
393
Tumor
0.3
537
Tumor
0.3
188
Normal
0.3
545
Tumor
0.3
513
Tumor
0.3
131
Tumor
0.3
635
Tumor
0.3
356
Normal
0.3
191
Tumor
0.3
223
Tumor
0.3
1025
Tumor
0.3
187
Tumor
0.3
185
Tumor
0.2
1027
Tumor
0.2
665
Tumor
0.2
647
Tumor
0.2
452
Normal
0.2
368
Normal
0.2
563
Tumor
0.2
571
Tumor
0.2
231
Tumor
0.2
785
Tumor
0.2
737
Tumor
0.2
411
Tumor
0.2
127
Tumor
0.2
365
Tumor
0.2
628
Normal
0.2
376
Normal
0.2
911
Tumor
0.2
147
Tumor
0.2
553
Tumor
0.2
471
Tumor
0.2
546
Normal
0.2
111
Normal
0.2
146
Normal
0.2
515
Tumor
0.2
816
Normal
0.2
171
Tumor
0.2
162
Normal
0.2
355
Tumor
0.2
145
Tumor
0.2
271
Tumor
0.2
497
Tumor
0.2
642
Normal
0.2
423
Tumor
0.2
257
Tumor
0.2
1022
Normal
0.2
341
Tumor
0.2
416
Normal
0.2
354
Normal
0.2
161
Tumor
0.2
141
Tumor
0.2
955
Tumor
0.2
685
Tumor
0.1
467
Tumor
0.1
914
Normal
0.1
618
Normal
0.1
136
Normal
0.1
786
Normal
0.1
938
Normal
0.1
124
Normal
0.1
267
Tumor
0.1
636
Normal
0.1
298
Normal
0.1
412
Normal
0.1
474
Normal
0.1
186
Normal
0.1
1041
Tumor
0.1
421
Tumor
0.1
482
Normal
0.1
525
Tumor
0.1
114
Normal
0.1
617
Tumor
0.1
375
Tumor
0.1
227
Tumor
0.1
415
Tumor
0.1
113
Tumor
0.1
466
Normal
0.1
975
Tumor
0.1
283
Tumor
0.1
172
Normal
0.1
724
Normal
0.1
363
Tumor
0.1
535
Tumor
0.1
1042
Normal
0.1
627
Tumor
0.1
128
Normal
0.1
493
Tumor
0.1
913
Tumor
0.1
361
Tumor
0.1
1016
Normal
0.1
364
Normal
0.0
258
Normal
0.0
954
Normal
0.0
314
Normal
0.0
755
Tumor
0.0
746
Normal
0.0
385
Tumor
0.0
943
Tumor
0.0
1028
Normal
0.0
851
Tumor
0.0
648
Normal
0.0
222
Normal
0.0
332
Normal
0.0
192
Normal
0.0
472
Normal
0.0
362
Normal
0.0
874
Normal
0.0
366
Normal
0.0
135
Tumor
0.0
756
Normal
0.0
358
Normal
0.0
218
Normal
0.0
444
Normal
0.0
224
Normal
0.0
861
Tumor
0.0
312
Normal
0.0
1031
Tumor
0.0
387
Tumor
0.0
818
Normal
0.0
1026
Normal
0.0
478
Normal
0.0
137
Tumor
0.0
483
Tumor
0.0
217
Tumor
0.0
956
Normal
0.0
462
Normal
0.0
881
Tumor
0.0
1015
Tumor
0.0
574
Normal
0.0
125
Tumor
0.0
142
Normal
0.0
813
Tumor
0.0
432
Normal
0.0
924
Normal
-0.1
262
Normal
-0.1
126
Normal
-0.1
132
Normal
-0.1
461
Tumor
-0.1
195
Tumor
-0.1
666
Normal
-0.1
148
Normal
-0.1
138
Normal
-0.1
394
Normal
-0.1
884
Normal
-0.1
966
Normal
-0.1
984
Normal
-0.1
715
Tumor
-0.1
862
Normal
-0.1
915
Tumor
-0.1
528
Normal
-0.1
741
Tumor
-0.1
538
Normal
-0.1
696
Normal
-0.1
723
Tumor
-0.1
212
Normal
-0.1
286
Normal
-0.1
858
Normal
-0.1
434
Normal
-0.1
671
Tumor
-0.1
448
Normal
-0.1
424
Normal
-0.1
422
Normal
-0.1
572
Normal
-0.1
328
Normal
-0.1
1014
Normal
-0.1
211
Tumor
-0.1
912
Normal
-0.1
777
Tumor
-0.1
534
Normal
-0.1
196
Normal
-0.1
311
Tumor
-0.1
852
Normal
-0.1
742
Normal
-0.1
468
Normal
-0.1
952
Normal
-0.1
516
Normal
-0.1
1046
Normal
-0.1
728
Normal
-0.1
392
Normal
-0.1
823
Tumor
-0.1
964
Normal
-0.1
738
Normal
-0.1
918
Normal
-0.1
968
Normal
-0.1
963
Tumor
-0.1
978
Normal
-0.1
664
Normal
-0.1
713
Tumor
-0.1
518
Normal
-0.1
428
Normal
-0.1
352
Normal
-0.1
1045
Tumor
-0.1
917
Tumor
-0.1
494
Normal
-0.1
744
Normal
-0.1
698
Normal
-0.2
433
Tumor
-0.2
944
Normal
-0.2
868
Normal
-0.2
926
Normal
-0.2
272
Normal
-0.2
697
Tumor
-0.2
814
Normal
-0.2
662
Normal
-0.2
922
Normal
-0.2
284
Normal
-0.2
427
Tumor
-0.2
526
Normal
-0.2
778
Normal
-0.2
824
Normal
-0.2
878
Normal
-0.2
214
Normal
-0.2
488
Normal
-0.2
982
Normal
-0.2
1032
Normal
-0.2
672
Normal
-0.2
554
Normal
-0.2
435
Tumor
-0.2
278
Normal
-0.2
447
Tumor
-0.2
865
Tumor
-0.2
414
Normal
-0.2
436
Normal
-0.2
384
Normal
-0.2
714
Normal
-0.2
916
Normal
-0.2
388
Normal
-0.2
484
Normal
-0.3
536
Normal
-0.3
857
Tumor
-0.3
446
Normal
-0.3
1043
Tumor
-0.3
863
Tumor
-0.3
426
Normal
-0.3
386
Normal
-0.3
686
Normal
-0.3
557
Tumor
-0.3
487
Tumor
-0.3
564
Normal
-0.3
383
Tumor
-0.3
558
Normal
-0.3
498
Normal
-0.3
721
Tumor
-0.3
568
Normal
-0.3
268
Normal
-0.3
342
Normal
-0.3
456
Normal
-0.3
867
Tumor
-0.3
396
Normal
-0.3
958
Normal
-0.3
228
Normal
-0.3
277
Tumor
-0.3
866
Normal
-0.3
716
Normal
-0.3
327
Tumor
-0.3
882
Normal
-0.3
573
Tumor
-0.3
344
Normal
-0.4
232
Normal
-0.4
514
Normal
-0.4
343
Tumor
-0.4
524
Normal
-0.4
976
Normal
-0.4
727
Tumor
-0.4
981
Tumor
-0.4
864
Normal
-0.4
395
Tumor
-0.4
492
Normal
-0.4
722
Normal
-0.5
491
Tumor
-0.6
455
Tumor
-0.6
1044
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
