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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACSM3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
164.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
81.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
76.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
74.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
67.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
66.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
58.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
55.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
51.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
41.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
38.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
31.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACSM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
231
Samples
Sample
Description
TPM
DO48677
0 years, male, NA, stage:3, alive, 1140 days
75.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
59.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
58.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
54.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
51.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
43.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
42.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
41.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
35.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
1.8
742
Normal
1.6
862
Normal
1.6
462
Normal
1.6
695
Tumor
1.5
534
Normal
1.4
128
Normal
1.3
546
Normal
1.3
618
Normal
1.2
636
Normal
1.2
484
Normal
1.2
824
Normal
1.2
1046
Normal
1.2
648
Normal
1.1
944
Normal
1.1
436
Normal
1.1
698
Normal
1.1
412
Normal
1.1
356
Normal
1.1
786
Normal
1.1
186
Normal
1.1
196
Normal
1.1
878
Normal
1.1
388
Normal
1.1
452
Normal
1.0
756
Normal
1.0
628
Normal
1.0
568
Normal
1.0
564
Normal
1.0
162
Normal
1.0
914
Normal
1.0
172
Normal
1.0
664
Normal
1.0
1016
Normal
1.0
1032
Normal
0.9
278
Normal
0.9
911
Tumor
0.9
424
Normal
0.9
616
Normal
0.9
358
Normal
0.9
446
Normal
0.9
132
Normal
0.9
818
Normal
0.9
572
Normal
0.9
472
Normal
0.9
864
Normal
0.9
376
Normal
0.9
482
Normal
0.9
494
Normal
0.9
114
Normal
0.9
332
Normal
0.9
342
Normal
0.9
1022
Normal
0.9
696
Normal
0.9
716
Normal
0.8
298
Normal
0.8
426
Normal
0.8
514
Normal
0.8
984
Normal
0.8
111
Normal
0.8
414
Normal
0.8
912
Normal
0.8
884
Normal
0.8
866
Normal
0.8
422
Normal
0.8
924
Normal
0.8
518
Normal
0.8
528
Normal
0.7
394
Normal
0.7
922
Normal
0.7
746
Normal
0.7
662
Normal
0.7
428
Normal
0.7
868
Normal
0.7
314
Normal
0.7
526
Normal
0.7
723
Tumor
0.7
738
Normal
0.7
474
Normal
0.6
432
Normal
0.6
964
Normal
0.6
466
Normal
0.6
214
Normal
0.6
666
Normal
0.6
686
Normal
0.6
816
Normal
0.6
554
Normal
0.6
1026
Normal
0.6
744
Normal
0.6
258
Normal
0.6
926
Normal
0.6
396
Normal
0.6
858
Normal
0.6
976
Normal
0.6
714
Normal
0.6
464
Normal
0.5
882
Normal
0.5
312
Normal
0.5
272
Normal
0.5
142
Normal
0.5
328
Normal
0.5
416
Normal
0.5
138
Normal
0.5
354
Normal
0.5
362
Normal
0.5
874
Normal
0.5
918
Normal
0.5
366
Normal
0.5
1044
Normal
0.5
146
Normal
0.5
423
Tumor
0.5
722
Normal
0.5
982
Normal
0.4
1042
Normal
0.4
232
Normal
0.4
488
Normal
0.4
352
Normal
0.4
778
Normal
0.4
286
Normal
0.4
558
Normal
0.4
228
Normal
0.4
1041
Tumor
0.4
448
Normal
0.4
642
Normal
0.4
672
Normal
0.4
1028
Normal
0.4
222
Normal
0.4
968
Normal
0.4
627
Tumor
0.4
212
Normal
0.4
148
Normal
0.4
136
Normal
0.4
966
Normal
0.4
938
Normal
0.4
574
Normal
0.4
952
Normal
0.3
728
Normal
0.3
344
Normal
0.3
218
Normal
0.3
262
Normal
0.3
571
Tumor
0.3
456
Normal
0.3
468
Normal
0.3
978
Normal
0.3
852
Normal
0.2
958
Normal
0.2
364
Normal
0.2
956
Normal
0.2
487
Tumor
0.2
368
Normal
0.2
392
Normal
0.2
538
Normal
0.1
1014
Normal
0.1
284
Normal
0.1
113
Tumor
0.1
741
Tumor
0.1
126
Normal
0.1
955
Tumor
0.1
916
Normal
0.0
981
Tumor
0.0
516
Normal
0.0
434
Normal
0.0
188
Normal
0.0
384
Normal
0.0
954
Normal
-0.1
915
Tumor
-0.1
386
Normal
-0.1
415
Tumor
-0.2
925
Tumor
-0.2
192
Normal
-0.2
127
Tumor
-0.2
124
Normal
-0.2
478
Normal
-0.3
492
Normal
-0.3
513
Tumor
-0.3
615
Tumor
-0.3
444
Normal
-0.3
498
Normal
-0.4
867
Tumor
-0.4
268
Normal
-0.4
1045
Tumor
-0.4
341
Tumor
-0.5
365
Tumor
-0.5
224
Normal
-0.5
137
Tumor
-0.5
663
Tumor
-0.5
261
Tumor
-0.5
217
Tumor
-0.5
461
Tumor
-0.6
145
Tumor
-0.6
481
Tumor
-0.6
141
Tumor
-0.6
563
Tumor
-0.6
861
Tumor
-0.6
536
Normal
-0.6
267
Tumor
-0.6
195
Tumor
-0.6
413
Tumor
-0.6
161
Tumor
-0.6
353
Tumor
-0.6
967
Tumor
-0.7
1015
Tumor
-0.7
524
Normal
-0.7
393
Tumor
-0.7
953
Tumor
-0.7
391
Tumor
-0.8
451
Tumor
-0.8
231
Tumor
-0.8
477
Tumor
-0.8
367
Tumor
-0.8
857
Tumor
-0.8
617
Tumor
-0.9
873
Tumor
-0.9
123
Tumor
-0.9
943
Tumor
-0.9
171
Tumor
-0.9
493
Tumor
-0.9
715
Tumor
-0.9
823
Tumor
-0.9
515
Tumor
-1.0
913
Tumor
-1.0
755
Tumor
-1.0
185
Tumor
-1.0
327
Tumor
-1.0
517
Tumor
-1.0
713
Tumor
-1.0
187
Tumor
-1.0
937
Tumor
-1.0
435
Tumor
-1.1
112
Tumor
-1.1
421
Tumor
-1.1
963
Tumor
-1.1
411
Tumor
-1.1
357
Tumor
-1.1
721
Tumor
-1.1
191
Tumor
-1.1
361
Tumor
-1.1
1013
Tumor
-1.2
535
Tumor
-1.2
355
Tumor
-1.2
785
Tumor
-1.2
227
Tumor
-1.2
431
Tumor
-1.3
433
Tumor
-1.3
647
Tumor
-1.3
383
Tumor
-1.3
313
Tumor
-1.3
851
Tumor
-1.3
557
Tumor
-1.3
223
Tumor
-1.3
447
Tumor
-1.4
125
Tumor
-1.4
387
Tumor
-1.4
491
Tumor
-1.4
635
Tumor
-1.4
1043
Tumor
-1.4
473
Tumor
-1.5
483
Tumor
-1.5
965
Tumor
-1.5
883
Tumor
-1.5
977
Tumor
-1.5
463
Tumor
-1.5
537
Tumor
-1.5
917
Tumor
-1.5
311
Tumor
-1.6
427
Tumor
-1.6
777
Tumor
-1.6
443
Tumor
-1.6
665
Tumor
-1.6
983
Tumor
-1.7
724
Normal
-1.7
957
Tumor
-1.7
923
Tumor
-1.7
881
Tumor
-1.7
297
Tumor
-1.7
727
Tumor
-1.7
813
Tumor
-1.8
135
Tumor
-1.8
445
Tumor
-1.8
213
Tumor
-1.8
147
Tumor
-1.8
533
Tumor
-1.8
863
Tumor
-1.8
497
Tumor
-1.8
567
Tumor
-1.9
877
Tumor
-1.9
814
Normal
-1.9
553
Tumor
-1.9
277
Tumor
-1.9
221
Tumor
-1.9
351
Tumor
-1.9
343
Tumor
-1.9
395
Tumor
-2.0
641
Tumor
-2.0
425
Tumor
-2.0
697
Tumor
-2.0
975
Tumor
-2.0
331
Tumor
-2.0
455
Tumor
-2.1
573
Tumor
-2.1
525
Tumor
-2.1
745
Tumor
-2.1
523
Tumor
-2.1
375
Tumor
-2.1
131
Tumor
-2.1
671
Tumor
-2.1
363
Tumor
-2.1
257
Tumor
-2.1
271
Tumor
-2.1
467
Tumor
-2.2
921
Tumor
-2.2
865
Tumor
-2.2
285
Tumor
-2.2
685
Tumor
-2.2
737
Tumor
-2.3
817
Tumor
-2.3
1031
Tumor
-2.3
211
Tumor
-2.3
385
Tumor
-2.4
815
Tumor
-2.4
1025
Tumor
-2.4
545
Tumor
-2.4
951
Tumor
-2.4
283
Tumor
-2.5
661
Tumor
-2.5
1027
Tumor
-2.5
743
Tumor
-2.6
1021
Tumor
-2.6
471
Tumor
-2.6
527
Tumor
-2.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.