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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
256.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1516.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1000.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
997.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
941.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
893.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
793.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
780.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
727.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
724.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
710.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
707.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
679.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
610.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
599.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
568.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
547.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
530.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
528.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
485.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
481.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
475.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
472.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
467.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
456.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
448.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
445.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
439.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
425.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
423.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
420.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
419.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
415.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
410.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
409.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
404.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
403.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
402.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
402.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
402.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
400.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
398.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
398.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
397.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
395.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
391.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
386.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
385.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
384.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
375.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
374.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
374.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
373.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
372.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
368.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
368.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
367.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
365.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
361.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
360.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
358.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
353.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
352.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
348.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
344.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
344.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
337.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
334.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
332.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
328.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
327.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
326.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
324.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
324.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
323.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
319.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
318.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
317.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
317.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
316.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
315.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
313.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
313.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
311.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
308.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
304.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
302.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
301.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
300.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
300.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
299.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
298.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
297.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
296.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
296.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
296.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
295.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
295.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
294.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
294.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
294.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
293.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
292.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
292.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
287.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
287.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
286.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
284.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
284.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
283.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
282.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
282.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
279.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
276.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
275.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
273.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
273.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
272.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
272.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
272.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
272.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
271.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
269.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
269.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
268.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
267.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
265.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
264.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
264.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
261.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
260.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
260.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
259.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
259.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
259.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
258.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
257.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
257.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
257.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
256.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
256.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
255.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
254.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
253.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
252.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
251.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
251.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
250.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
250.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
250.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
249.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
248.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
248.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
247.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
246.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
246.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
245.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
245.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
245.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
244.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
242.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
242.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
241.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
239.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
237.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
236.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
236.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
236.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
235.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
235.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
235.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
234.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
233.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
233.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
233.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
231.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
230.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
229.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
229.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
229.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
228.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
228.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
227.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
226.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
226.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
225.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
225.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
225.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
223.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
223.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
223.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
221.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
221.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
221.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
221.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
219.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
219.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
218.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
218.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
218.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
218.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
217.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
215.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
215.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
214.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
213.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
212.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
212.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
211.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
210.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
209.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
208.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
208.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
207.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
207.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
205.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
204.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
203.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
202.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
202.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
201.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
198.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
195.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
194.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
193.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
192.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
191.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
189.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
188.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
188.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
187.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
187.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
186.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
186.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
184.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
183.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
183.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
182.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
182.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
182.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
181.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
181.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
181.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
181.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
181.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
180.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
179.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
177.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
177.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
177.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
176.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
176.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
174.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
174.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
173.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
172.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
171.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
169.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
169.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
168.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
168.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
168.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
168.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
167.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
167.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
167.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
166.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
165.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
165.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
165.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
164.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
164.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
163.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
163.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
162.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
162.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
162.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
161.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
161.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
160.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
160.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
160.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
160.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
158.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
158.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
157.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
157.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
156.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
156.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
155.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
154.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
153.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
153.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
152.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
150.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
150.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
150.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
149.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
149.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
149.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
146.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
144.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
143.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
142.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
140.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
140.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
139.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
138.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
138.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
138.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
137.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
136.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
135.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
134.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
133.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
130.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
129.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
128.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
127.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
125.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
124.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
124.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
124.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
121.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
121.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
119.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
118.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
116.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
116.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
115.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
115.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
114.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
114.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
113.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
113.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
107.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
107.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
106.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
105.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
105.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
103.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
100.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
100.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
99.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
94.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
94.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
92.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
91.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
91.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
90.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
89.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
89.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
86.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
70.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
62.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
62.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
57.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
51.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
44.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
42.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
222.8
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
1075.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
687.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
683.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
660.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
568.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
531.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
528.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
521.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
518.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
504.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
503.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
479.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
473.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
465.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
462.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
451.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
445.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
443.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
432.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
431.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
418.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
416.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
404.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
385.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
382.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
375.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
370.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
363.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
352.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
347.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
346.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
344.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
342.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
338.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
334.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
329.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
321.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
321.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
312.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
311.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
299.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
299.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
298.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
291.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
291.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
290.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
288.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
285.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
283.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
282.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
274.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
271.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
271.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
270.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
268.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
267.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
266.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
263.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
261.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
259.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
258.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
256.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
255.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
255.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
254.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
253.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
246.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
244.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
239.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
238.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
236.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
236.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
234.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
233.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
233.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
232.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
227.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
227.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
226.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
226.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
225.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
224.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
224.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
220.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
219.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
219.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
217.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
217.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
217.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
216.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
215.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
215.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
213.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
212.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
211.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
211.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
211.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
207.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
205.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
203.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
203.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
200.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
199.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
199.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
198.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
196.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
196.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
196.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
195.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
194.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
191.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
191.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
190.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
190.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
188.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
186.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
184.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
184.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
183.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
183.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
180.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
179.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
179.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
178.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
177.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
177.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
176.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
175.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
174.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
174.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
174.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
173.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
173.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
173.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
173.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
171.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
171.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
170.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
170.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
170.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
169.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
169.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
168.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
167.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
167.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
166.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
166.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
166.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
164.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
163.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
162.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
162.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
161.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
160.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
159.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
159.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
159.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
158.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
158.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
157.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
157.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
156.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
156.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
153.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
153.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
152.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
151.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
148.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
146.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
144.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
144.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
140.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
139.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
139.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
138.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
137.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
137.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
137.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
135.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
134.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
134.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
133.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
133.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
131.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
129.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
127.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
125.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
125.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
124.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
124.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
123.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
123.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
123.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
122.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
121.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
117.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
115.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
115.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
115.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
113.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
112.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
111.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
108.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
107.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
105.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
105.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
105.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
105.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
105.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
100.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
99.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
97.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
97.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
96.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
94.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
94.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
93.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
91.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
91.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
89.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
87.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
87.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
84.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
76.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
73.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
71.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
57.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
46.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
44.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
2.0
411
Tumor
1.2
571
Tumor
1.0
1027
Tumor
1.0
1013
Tumor
0.8
785
Tumor
0.8
513
Tumor
0.8
557
Tumor
0.7
465
Tumor
0.7
745
Tumor
0.7
313
Tumor
0.6
857
Tumor
0.6
863
Tumor
0.6
491
Tumor
0.6
925
Tumor
0.6
435
Tumor
0.5
873
Tumor
0.5
515
Tumor
0.5
261
Tumor
0.5
481
Tumor
0.5
851
Tumor
0.4
953
Tumor
0.4
1043
Tumor
0.4
423
Tumor
0.4
527
Tumor
0.4
1045
Tumor
0.4
125
Tumor
0.4
393
Tumor
0.4
365
Tumor
0.4
267
Tumor
0.4
713
Tumor
0.4
742
Normal
0.4
697
Tumor
0.3
227
Tumor
0.3
231
Tumor
0.3
257
Tumor
0.3
357
Tumor
0.3
685
Tumor
0.3
383
Tumor
0.3
436
Normal
0.3
171
Tumor
0.3
721
Tumor
0.3
636
Normal
0.3
824
Normal
0.3
428
Normal
0.2
414
Normal
0.2
433
Tumor
0.2
145
Tumor
0.2
328
Normal
0.2
497
Tumor
0.2
161
Tumor
0.2
618
Normal
0.2
864
Normal
0.2
298
Normal
0.2
573
Tumor
0.2
424
Normal
0.2
862
Normal
0.2
162
Normal
0.2
982
Normal
0.2
913
Tumor
0.2
314
Normal
0.2
147
Tumor
0.2
914
Normal
0.2
615
Tumor
0.2
466
Normal
0.2
786
Normal
0.2
878
Normal
0.2
1016
Normal
0.2
923
Tumor
0.2
868
Normal
0.2
964
Normal
0.2
462
Normal
0.1
358
Normal
0.1
882
Normal
0.1
141
Tumor
0.1
641
Tumor
0.1
472
Normal
0.1
858
Normal
0.1
356
Normal
0.1
912
Normal
0.1
262
Normal
0.1
922
Normal
0.1
852
Normal
0.1
142
Normal
0.1
114
Normal
0.1
866
Normal
0.1
978
Normal
0.1
148
Normal
0.1
482
Normal
0.1
111
Normal
0.1
818
Normal
0.1
136
Normal
0.1
342
Normal
0.1
487
Tumor
0.1
741
Tumor
0.1
464
Normal
0.1
1026
Normal
0.1
128
Normal
0.1
937
Tumor
0.1
488
Normal
0.1
461
Tumor
0.1
756
Normal
0.1
361
Tumor
0.1
272
Normal
0.1
567
Tumor
0.1
746
Normal
0.1
534
Normal
0.1
394
Normal
0.1
451
Tumor
0.1
477
Tumor
0.1
537
Tumor
0.1
1046
Normal
0.1
196
Normal
0.1
616
Normal
0.1
628
Normal
0.1
1032
Normal
0.1
723
Tumor
0.1
258
Normal
0.1
188
Normal
0.1
137
Tumor
0.1
698
Normal
0.1
526
Normal
0.1
938
Normal
0.0
363
Tumor
0.0
926
Normal
0.0
222
Normal
0.0
1014
Normal
0.0
874
Normal
0.0
138
Normal
0.0
446
Normal
0.0
642
Normal
0.0
392
Normal
0.0
816
Normal
0.0
568
Normal
0.0
664
Normal
0.0
452
Normal
0.0
268
Normal
0.0
426
Normal
0.0
968
Normal
0.0
232
Normal
0.0
635
Tumor
0.0
416
Normal
0.0
422
Normal
0.0
648
Normal
0.0
113
Tumor
0.0
432
Normal
0.0
728
Normal
0.0
778
Normal
0.0
564
Normal
0.0
695
Tumor
0.0
744
Normal
0.0
448
Normal
0.0
1042
Normal
0.0
376
Normal
0.0
918
Normal
0.0
514
Normal
0.0
366
Normal
0.0
364
Normal
0.0
738
Normal
0.0
146
Normal
0.0
214
Normal
0.0
662
Normal
0.0
525
Tumor
0.0
172
Normal
0.0
343
Tumor
0.0
412
Normal
0.0
332
Normal
0.0
518
Normal
0.0
362
Normal
0.0
427
Tumor
0.0
277
Tumor
0.0
483
Tumor
0.0
944
Normal
0.0
218
Normal
0.0
286
Normal
0.0
284
Normal
0.0
714
Normal
0.0
468
Normal
0.0
434
Normal
0.0
278
Normal
0.0
696
Normal
0.0
865
Tumor
0.0
352
Normal
0.0
916
Normal
0.0
467
Tumor
0.0
563
Tumor
0.0
135
Tumor
0.0
388
Normal
0.0
112
Tumor
0.0
686
Normal
0.0
528
Normal
0.0
665
Tumor
0.0
572
Normal
0.0
966
Normal
0.0
484
Normal
0.0
722
Normal
0.0
443
Tumor
-0.1
474
Normal
-0.1
952
Normal
-0.1
558
Normal
-0.1
494
Normal
-0.1
228
Normal
-0.1
516
Normal
-0.1
1041
Tumor
-0.1
976
Normal
-0.1
124
Normal
-0.1
924
Normal
-0.1
815
Tumor
-0.1
312
Normal
-0.1
1044
Normal
-0.1
777
Tumor
-0.1
186
Normal
-0.1
354
Normal
-0.1
861
Tumor
-0.1
385
Tumor
-0.1
387
Tumor
-0.1
884
Normal
-0.1
212
Normal
-0.1
911
Tumor
-0.1
574
Normal
-0.1
867
Tumor
-0.1
1015
Tumor
-0.1
478
Normal
-0.1
823
Tumor
-0.1
1022
Normal
-0.1
984
Normal
-0.1
727
Tumor
-0.1
954
Normal
-0.1
368
Normal
-0.1
955
Tumor
-0.1
344
Normal
-0.1
386
Normal
-0.1
456
Normal
-0.1
915
Tumor
-0.1
355
Tumor
-0.1
716
Normal
-0.1
666
Normal
-0.1
396
Normal
-0.1
883
Tumor
-0.1
546
Normal
-0.1
384
Normal
-0.1
195
Tumor
-0.1
755
Tumor
-0.1
445
Tumor
-0.1
132
Normal
-0.1
1028
Normal
-0.1
421
Tumor
-0.2
473
Tumor
-0.2
963
Tumor
-0.2
126
Normal
-0.2
958
Normal
-0.2
672
Normal
-0.2
367
Tumor
-0.2
224
Normal
-0.2
981
Tumor
-0.2
533
Tumor
-0.2
661
Tumor
-0.2
881
Tumor
-0.2
187
Tumor
-0.2
191
Tumor
-0.2
977
Tumor
-0.2
297
Tumor
-0.2
1031
Tumor
-0.2
538
Normal
-0.2
724
Normal
-0.2
455
Tumor
-0.2
663
Tumor
-0.2
217
Tumor
-0.2
956
Normal
-0.2
524
Normal
-0.2
671
Tumor
-0.2
395
Tumor
-0.2
813
Tumor
-0.3
647
Tumor
-0.3
737
Tumor
-0.3
127
Tumor
-0.3
983
Tumor
-0.3
327
Tumor
-0.3
492
Normal
-0.3
814
Normal
-0.3
498
Normal
-0.3
493
Tumor
-0.3
185
Tumor
-0.3
917
Tumor
-0.3
967
Tumor
-0.3
431
Tumor
-0.3
444
Normal
-0.3
192
Normal
-0.3
353
Tumor
-0.3
123
Tumor
-0.3
311
Tumor
-0.3
554
Normal
-0.3
351
Tumor
-0.3
617
Tumor
-0.3
213
Tumor
-0.3
536
Normal
-0.3
447
Tumor
-0.3
375
Tumor
-0.4
943
Tumor
-0.4
413
Tumor
-0.4
221
Tumor
-0.4
463
Tumor
-0.4
341
Tumor
-0.4
1025
Tumor
-0.4
921
Tumor
-0.4
957
Tumor
-0.4
283
Tumor
-0.4
415
Tumor
-0.5
715
Tumor
-0.5
471
Tumor
-0.5
391
Tumor
-0.5
425
Tumor
-0.5
271
Tumor
-0.5
223
Tumor
-0.5
523
Tumor
-0.5
951
Tumor
-0.5
285
Tumor
-0.5
975
Tumor
-0.6
1021
Tumor
-0.6
535
Tumor
-0.6
517
Tumor
-0.6
965
Tumor
-0.6
553
Tumor
-0.6
817
Tumor
-0.6
877
Tumor
-0.7
743
Tumor
-0.7
211
Tumor
-0.7
331
Tumor
-0.9
545
Tumor
-0.9
131
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.