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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UPF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
52.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
49.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
49.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
38.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UPF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.0
Number of samples
231
Samples
Sample
Description
TPM
DO48725
0 years, male, NA, stage:1, alive, 780 days
124.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
103.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.1
967
Tumor
1.0
563
Tumor
1.0
745
Tumor
0.7
571
Tumor
0.6
671
Tumor
0.6
951
Tumor
0.6
815
Tumor
0.6
285
Tumor
0.6
545
Tumor
0.6
661
Tumor
0.6
367
Tumor
0.5
331
Tumor
0.5
865
Tumor
0.5
737
Tumor
0.5
537
Tumor
0.5
533
Tumor
0.5
131
Tumor
0.5
923
Tumor
0.5
727
Tumor
0.5
983
Tumor
0.4
1013
Tumor
0.4
123
Tumor
0.4
171
Tumor
0.4
883
Tumor
0.4
1025
Tumor
0.4
1021
Tumor
0.4
271
Tumor
0.4
443
Tumor
0.4
921
Tumor
0.4
553
Tumor
0.3
227
Tumor
0.3
125
Tumor
0.3
981
Tumor
0.3
231
Tumor
0.3
515
Tumor
0.3
977
Tumor
0.3
965
Tumor
0.3
1015
Tumor
0.3
513
Tumor
0.3
137
Tumor
0.3
473
Tumor
0.3
943
Tumor
0.3
1031
Tumor
0.3
817
Tumor
0.3
221
Tumor
0.3
261
Tumor
0.3
277
Tumor
0.3
697
Tumor
0.3
112
Tumor
0.3
957
Tumor
0.3
851
Tumor
0.3
523
Tumor
0.2
1043
Tumor
0.2
391
Tumor
0.2
915
Tumor
0.2
497
Tumor
0.2
743
Tumor
0.2
487
Tumor
0.2
283
Tumor
0.2
567
Tumor
0.2
455
Tumor
0.2
161
Tumor
0.2
445
Tumor
0.2
527
Tumor
0.2
641
Tumor
0.2
363
Tumor
0.2
461
Tumor
0.2
1041
Tumor
0.2
777
Tumor
0.2
695
Tumor
0.2
385
Tumor
0.2
425
Tumor
0.2
267
Tumor
0.2
471
Tumor
0.2
411
Tumor
0.2
493
Tumor
0.2
431
Tumor
0.2
955
Tumor
0.1
685
Tumor
0.1
483
Tumor
0.1
663
Tumor
0.1
141
Tumor
0.1
355
Tumor
0.1
713
Tumor
0.1
327
Tumor
0.1
873
Tumor
0.1
297
Tumor
0.1
785
Tumor
0.1
627
Tumor
0.1
922
Normal
0.1
937
Tumor
0.1
463
Tumor
0.1
147
Tumor
0.1
135
Tumor
0.1
395
Tumor
0.1
877
Tumor
0.1
813
Tumor
0.1
484
Normal
0.1
357
Tumor
0.1
393
Tumor
0.1
913
Tumor
0.1
1027
Tumor
0.1
481
Tumor
0.1
435
Tumor
0.1
916
Normal
0.1
223
Tumor
0.1
881
Tumor
0.1
746
Normal
0.1
356
Normal
0.1
863
Tumor
0.1
353
Tumor
0.1
526
Normal
0.1
528
Normal
0.1
488
Normal
0.1
911
Tumor
0.1
721
Tumor
0.1
375
Tumor
0.1
462
Normal
0.0
963
Tumor
0.0
1045
Tumor
0.0
924
Normal
0.0
861
Tumor
0.0
313
Tumor
0.0
918
Normal
0.0
975
Tumor
0.0
558
Normal
0.0
217
Tumor
0.0
824
Normal
0.0
415
Tumor
0.0
648
Normal
0.0
482
Normal
0.0
557
Tumor
0.0
494
Normal
0.0
568
Normal
0.0
786
Normal
0.0
286
Normal
0.0
864
Normal
0.0
423
Tumor
0.0
912
Normal
0.0
1016
Normal
0.0
823
Tumor
0.0
868
Normal
0.0
412
Normal
0.0
525
Tumor
0.0
926
Normal
0.0
554
Normal
0.0
328
Normal
0.0
1014
Normal
0.0
451
Tumor
0.0
964
Normal
0.0
491
Tumor
0.0
741
Tumor
0.0
617
Tumor
0.0
755
Tumor
0.0
128
Normal
0.0
211
Tumor
0.0
387
Tumor
0.0
365
Tumor
0.0
518
Normal
0.0
477
Tumor
0.0
534
Normal
0.0
944
Normal
0.0
938
Normal
0.0
982
Normal
0.0
958
Normal
0.0
546
Normal
0.0
715
Tumor
0.0
364
Normal
0.0
572
Normal
0.0
862
Normal
0.0
714
Normal
0.0
984
Normal
0.0
756
Normal
0.0
142
Normal
0.0
728
Normal
0.0
852
Normal
0.0
867
Tumor
0.0
723
Tumor
0.0
228
Normal
0.0
778
Normal
0.0
314
Normal
0.0
413
Tumor
0.0
866
Normal
0.0
882
Normal
0.0
514
Normal
0.0
465
Tumor
0.0
696
Normal
0.0
738
Normal
0.0
218
Normal
0.0
724
Normal
0.0
114
Normal
0.0
664
Normal
0.0
416
Normal
0.0
222
Normal
0.0
258
Normal
0.0
536
Normal
0.0
814
Normal
0.0
162
Normal
0.0
1032
Normal
0.0
472
Normal
0.0
616
Normal
0.0
474
Normal
0.0
466
Normal
0.0
1022
Normal
0.0
878
Normal
0.0
615
Tumor
0.0
212
Normal
0.0
278
Normal
0.0
132
Normal
0.0
952
Normal
0.0
368
Normal
0.0
187
Tumor
-0.1
966
Normal
-0.1
195
Tumor
-0.1
111
Normal
-0.1
172
Normal
-0.1
978
Normal
-0.1
968
Normal
-0.1
492
Normal
-0.1
376
Normal
-0.1
816
Normal
-0.1
343
Tumor
-0.1
517
Tumor
-0.1
436
Normal
-0.1
362
Normal
-0.1
342
Normal
-0.1
858
Normal
-0.1
298
Normal
-0.1
422
Normal
-0.1
744
Normal
-0.1
636
Normal
-0.1
574
Normal
-0.1
433
Tumor
-0.1
686
Normal
-0.1
428
Normal
-0.1
311
Tumor
-0.1
618
Normal
-0.1
421
Tumor
-0.1
742
Normal
-0.1
925
Tumor
-0.1
716
Normal
-0.1
524
Normal
-0.1
145
Tumor
-0.1
232
Normal
-0.1
432
Normal
-0.1
564
Normal
-0.1
394
Normal
-0.1
284
Normal
-0.1
446
Normal
-0.1
332
Normal
-0.1
388
Normal
-0.1
447
Tumor
-0.1
396
Normal
-0.1
1026
Normal
-0.1
666
Normal
-0.1
1028
Normal
-0.1
464
Normal
-0.1
954
Normal
-0.1
424
Normal
-0.1
148
Normal
-0.1
535
Tumor
-0.1
196
Normal
-0.1
257
Tumor
-0.1
392
Normal
-0.1
516
Normal
-0.1
351
Tumor
-0.1
426
Normal
-0.1
722
Normal
-0.1
498
Normal
-0.1
884
Normal
-0.1
312
Normal
-0.1
352
Normal
-0.1
478
Normal
-0.1
186
Normal
-0.1
917
Tumor
-0.1
818
Normal
-0.1
662
Normal
-0.1
224
Normal
-0.1
672
Normal
-0.1
414
Normal
-0.1
665
Tumor
-0.1
341
Tumor
-0.1
452
Normal
-0.1
448
Normal
-0.1
976
Normal
-0.1
358
Normal
-0.1
628
Normal
-0.1
138
Normal
-0.1
124
Normal
-0.1
953
Tumor
-0.1
136
Normal
-0.1
874
Normal
-0.1
344
Normal
-0.1
538
Normal
-0.1
434
Normal
-0.1
914
Normal
-0.1
444
Normal
-0.1
698
Normal
-0.1
386
Normal
-0.2
185
Tumor
-0.2
1044
Normal
-0.2
384
Normal
-0.2
214
Normal
-0.2
268
Normal
-0.2
857
Tumor
-0.2
1042
Normal
-0.2
468
Normal
-0.2
956
Normal
-0.2
354
Normal
-0.2
456
Normal
-0.2
113
Tumor
-0.2
642
Normal
-0.2
361
Tumor
-0.2
127
Tumor
-0.2
1046
Normal
-0.2
272
Normal
-0.2
262
Normal
-0.2
366
Normal
-0.2
126
Normal
-0.2
647
Tumor
-0.2
383
Tumor
-0.2
146
Normal
-0.2
188
Normal
-0.2
467
Tumor
-0.2
192
Normal
-0.2
213
Tumor
-0.3
191
Tumor
-0.3
427
Tumor
-0.3
573
Tumor
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
