We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
100.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
154.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
62.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
0.6
1027
Tumor
0.5
818
Normal
0.5
497
Tumor
0.5
445
Tumor
0.5
955
Tumor
0.4
331
Tumor
0.4
431
Tumor
0.4
311
Tumor
0.4
481
Tumor
0.4
661
Tumor
0.4
351
Tumor
0.4
915
Tumor
0.4
863
Tumor
0.4
695
Tumor
0.4
425
Tumor
0.4
958
Normal
0.4
387
Tumor
0.4
388
Normal
0.4
261
Tumor
0.4
527
Tumor
0.3
123
Tumor
0.3
137
Tumor
0.3
615
Tumor
0.3
368
Normal
0.3
813
Tumor
0.3
192
Normal
0.3
785
Tumor
0.3
922
Normal
0.3
976
Normal
0.3
777
Tumor
0.3
938
Normal
0.3
353
Tumor
0.3
386
Normal
0.3
526
Normal
0.3
1013
Tumor
0.3
926
Normal
0.3
642
Normal
0.3
647
Tumor
0.3
128
Normal
0.3
745
Tumor
0.3
918
Normal
0.3
636
Normal
0.2
558
Normal
0.2
195
Tumor
0.2
968
Normal
0.2
564
Normal
0.2
737
Tumor
0.2
455
Tumor
0.2
366
Normal
0.2
474
Normal
0.2
635
Tumor
0.2
618
Normal
0.2
1045
Tumor
0.2
232
Normal
0.2
523
Tumor
0.2
1046
Normal
0.2
171
Tumor
0.2
964
Normal
0.2
816
Normal
0.2
328
Normal
0.2
546
Normal
0.2
196
Normal
0.2
746
Normal
0.2
448
Normal
0.2
463
Tumor
0.2
383
Tumor
0.2
954
Normal
0.2
354
Normal
0.2
223
Tumor
0.2
327
Tumor
0.2
394
Normal
0.2
313
Tumor
0.2
376
Normal
0.2
572
Normal
0.2
538
Normal
0.2
554
Normal
0.2
172
Normal
0.2
944
Normal
0.2
392
Normal
0.2
616
Normal
0.2
1022
Normal
0.2
536
Normal
0.2
472
Normal
0.2
852
Normal
0.2
356
Normal
0.2
862
Normal
0.2
952
Normal
0.2
923
Tumor
0.2
286
Normal
0.2
358
Normal
0.2
648
Normal
0.2
518
Normal
0.1
534
Normal
0.1
916
Normal
0.1
864
Normal
0.1
142
Normal
0.1
728
Normal
0.1
696
Normal
0.1
778
Normal
0.1
815
Tumor
0.1
628
Normal
0.1
464
Normal
0.1
446
Normal
0.1
911
Tumor
0.1
222
Normal
0.1
861
Tumor
0.1
364
Normal
0.1
462
Normal
0.1
568
Normal
0.1
162
Normal
0.1
361
Tumor
0.1
814
Normal
0.1
214
Normal
0.1
212
Normal
0.1
278
Normal
0.1
482
Normal
0.1
756
Normal
0.1
268
Normal
0.1
362
Normal
0.1
412
Normal
0.1
391
Tumor
0.1
1028
Normal
0.1
111
Normal
0.1
1014
Normal
0.1
977
Tumor
0.1
484
Normal
0.1
272
Normal
0.1
975
Tumor
0.1
914
Normal
0.1
574
Normal
0.1
744
Normal
0.1
963
Tumor
0.1
471
Tumor
0.1
298
Normal
0.1
571
Tumor
0.1
738
Normal
0.1
341
Tumor
0.1
411
Tumor
0.1
314
Normal
0.1
742
Normal
0.1
524
Normal
0.1
488
Normal
0.1
283
Tumor
0.1
478
Normal
0.1
1044
Normal
0.1
258
Normal
0.1
1032
Normal
0.1
432
Normal
0.1
957
Tumor
0.1
284
Normal
0.1
145
Tumor
0.1
147
Tumor
0.1
422
Normal
0.1
416
Normal
0.1
686
Normal
0.1
1016
Normal
0.1
528
Normal
0.1
444
Normal
0.1
912
Normal
0.1
755
Tumor
0.1
857
Tumor
0.1
1021
Tumor
0.1
384
Normal
0.1
114
Normal
0.1
516
Normal
0.1
125
Tumor
0.1
913
Tumor
0.1
124
Normal
0.1
563
Tumor
0.1
786
Normal
0.1
357
Tumor
0.0
662
Normal
0.0
132
Normal
0.0
924
Normal
0.0
217
Tumor
0.0
666
Normal
0.0
396
Normal
0.0
433
Tumor
0.0
868
Normal
0.0
135
Tumor
0.0
984
Normal
0.0
186
Normal
0.0
365
Tumor
0.0
966
Normal
0.0
421
Tumor
0.0
1042
Normal
0.0
617
Tumor
0.0
722
Normal
0.0
956
Normal
0.0
858
Normal
0.0
466
Normal
0.0
878
Normal
0.0
866
Normal
0.0
1026
Normal
0.0
713
Tumor
0.0
363
Tumor
0.0
352
Normal
0.0
434
Normal
0.0
452
Normal
0.0
297
Tumor
0.0
262
Normal
0.0
138
Normal
0.0
723
Tumor
0.0
698
Normal
0.0
228
Normal
0.0
218
Normal
0.0
865
Tumor
0.0
342
Normal
0.0
221
Tumor
0.0
874
Normal
0.0
1015
Tumor
0.0
375
Tumor
0.0
714
Normal
0.0
937
Tumor
0.0
721
Tumor
0.0
461
Tumor
0.0
921
Tumor
0.0
332
Normal
0.0
741
Tumor
0.0
436
Normal
0.0
824
Normal
0.0
414
Normal
0.0
494
Normal
0.0
213
Tumor
0.0
277
Tumor
0.0
697
Tumor
0.0
312
Normal
0.0
257
Tumor
0.0
126
Normal
0.0
191
Tumor
0.0
727
Tumor
0.0
877
Tumor
0.0
113
Tumor
0.0
344
Normal
-0.1
188
Normal
-0.1
982
Normal
-0.1
514
Normal
-0.1
873
Tumor
-0.1
395
Tumor
-0.1
148
Normal
-0.1
515
Tumor
-0.1
867
Tumor
-0.1
136
Normal
-0.1
477
Tumor
-0.1
447
Tumor
-0.1
224
Normal
-0.1
724
Normal
-0.1
716
Normal
-0.1
627
Tumor
-0.1
672
Normal
-0.1
1041
Tumor
-0.1
917
Tumor
-0.1
882
Normal
-0.1
435
Tumor
-0.1
884
Normal
-0.1
413
Tumor
-0.1
953
Tumor
-0.1
665
Tumor
-0.1
443
Tumor
-0.1
664
Normal
-0.1
663
Tumor
-0.1
492
Normal
-0.1
127
Tumor
-0.1
415
Tumor
-0.1
465
Tumor
-0.1
533
Tumor
-0.1
271
Tumor
-0.1
423
Tumor
-0.2
146
Normal
-0.2
557
Tumor
-0.2
468
Normal
-0.2
1025
Tumor
-0.2
161
Tumor
-0.2
517
Tumor
-0.2
553
Tumor
-0.2
881
Tumor
-0.2
367
Tumor
-0.2
483
Tumor
-0.2
493
Tumor
-0.2
456
Normal
-0.2
1043
Tumor
-0.2
467
Tumor
-0.2
424
Normal
-0.2
187
Tumor
-0.2
491
Tumor
-0.2
641
Tumor
-0.2
883
Tumor
-0.2
567
Tumor
-0.2
498
Normal
-0.2
573
Tumor
-0.2
943
Tumor
-0.2
231
Tumor
-0.3
671
Tumor
-0.3
978
Normal
-0.3
355
Tumor
-0.3
267
Tumor
-0.3
427
Tumor
-0.3
451
Tumor
-0.3
965
Tumor
-0.3
112
Tumor
-0.3
285
Tumor
-0.3
851
Tumor
-0.3
1031
Tumor
-0.3
525
Tumor
-0.3
227
Tumor
-0.3
426
Normal
-0.3
141
Tumor
-0.3
951
Tumor
-0.3
385
Tumor
-0.3
513
Tumor
-0.3
428
Normal
-0.3
393
Tumor
-0.3
545
Tumor
-0.3
211
Tumor
-0.4
537
Tumor
-0.4
685
Tumor
-0.4
823
Tumor
-0.4
535
Tumor
-0.4
983
Tumor
-0.4
487
Tumor
-0.4
185
Tumor
-0.4
343
Tumor
-0.5
473
Tumor
-0.5
715
Tumor
-0.5
981
Tumor
-0.5
743
Tumor
-0.5
131
Tumor
-0.5
925
Tumor
-0.7
817
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
