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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
158.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
154.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
116.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
115.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
115.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
105.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
102.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
95.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
93.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
92.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
90.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
89.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
88.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
85.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
84.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
83.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
78.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
78.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
76.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
76.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
75.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
72.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
72.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
71.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
71.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
71.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
71.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
70.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
69.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
69.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
69.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
68.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
67.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
66.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
65.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
65.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
64.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
64.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
64.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
64.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
63.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
62.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
62.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
61.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
61.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
60.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
59.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
59.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
58.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
58.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
57.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
57.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
56.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
56.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
56.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
55.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
55.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
55.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
55.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
53.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
53.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
52.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
52.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
52.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
51.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
50.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
50.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
50.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
49.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
49.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
49.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
49.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
48.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
48.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
47.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
46.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
45.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
45.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
44.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
43.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
43.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
43.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
40.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
40.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
40.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
38.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
38.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
35.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
31.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.8
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
143.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
136.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
135.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
132.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
131.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
131.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
126.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
118.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
115.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
114.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
106.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
106.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
104.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
102.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
101.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
98.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
98.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
98.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
98.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
94.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
93.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
88.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
87.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
84.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
82.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
81.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
80.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
80.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
78.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
78.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
78.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
77.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
76.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
75.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
74.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
74.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
72.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
70.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
68.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
68.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
67.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
67.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
64.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
63.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
63.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
63.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
63.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
62.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
61.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
61.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
61.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
60.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
60.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
59.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
59.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
59.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
59.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
58.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
58.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
58.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
56.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
56.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
56.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
55.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
54.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
54.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
53.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
52.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
52.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
52.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
52.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
51.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
50.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
50.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
49.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
49.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
49.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
49.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
49.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
48.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
47.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
47.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
47.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
45.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
44.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
44.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
44.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
43.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
42.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
42.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
42.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
41.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
41.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
40.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
40.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
40.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
40.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
38.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
171
Tumor
1.2
635
Tumor
1.0
911
Tumor
0.9
755
Tumor
0.9
481
Tumor
0.8
967
Tumor
0.8
627
Tumor
0.7
636
Normal
0.7
665
Tumor
0.7
261
Tumor
0.6
231
Tumor
0.6
615
Tumor
0.6
186
Normal
0.6
915
Tumor
0.6
128
Normal
0.6
358
Normal
0.6
618
Normal
0.6
452
Normal
0.6
196
Normal
0.6
148
Normal
0.6
132
Normal
0.6
314
Normal
0.6
664
Normal
0.5
332
Normal
0.5
464
Normal
0.5
648
Normal
0.5
354
Normal
0.5
162
Normal
0.5
428
Normal
0.5
361
Tumor
0.5
172
Normal
0.5
436
Normal
0.5
1045
Tumor
0.5
742
Normal
0.5
568
Normal
0.5
824
Normal
0.5
422
Normal
0.5
414
Normal
0.5
258
Normal
0.5
424
Normal
0.5
342
Normal
0.5
388
Normal
0.5
446
Normal
0.5
376
Normal
0.5
564
Normal
0.5
465
Tumor
0.5
278
Normal
0.5
432
Normal
0.5
426
Normal
0.5
435
Tumor
0.5
462
Normal
0.5
222
Normal
0.5
137
Tumor
0.4
365
Tumor
0.4
111
Normal
0.4
925
Tumor
0.4
746
Normal
0.4
232
Normal
0.4
741
Tumor
0.4
298
Normal
0.4
124
Normal
0.4
864
Normal
0.4
136
Normal
0.4
912
Normal
0.4
862
Normal
0.4
868
Normal
0.4
127
Tumor
0.4
394
Normal
0.4
738
Normal
0.4
356
Normal
0.4
884
Normal
0.4
114
Normal
0.4
262
Normal
0.4
1041
Tumor
0.3
214
Normal
0.3
878
Normal
0.3
227
Tumor
0.3
786
Normal
0.3
616
Normal
0.3
666
Normal
0.3
138
Normal
0.3
387
Tumor
0.3
344
Normal
0.3
466
Normal
0.3
272
Normal
0.3
698
Normal
0.3
1016
Normal
0.3
818
Normal
0.3
964
Normal
0.3
534
Normal
0.3
938
Normal
0.3
642
Normal
0.3
628
Normal
0.3
362
Normal
0.3
126
Normal
0.3
352
Normal
0.3
1046
Normal
0.3
744
Normal
0.3
882
Normal
0.3
866
Normal
0.3
572
Normal
0.3
353
Tumor
0.3
528
Normal
0.3
482
Normal
0.3
368
Normal
0.3
984
Normal
0.3
443
Tumor
0.3
218
Normal
0.3
286
Normal
0.3
456
Normal
0.3
448
Normal
0.3
451
Tumor
0.3
563
Tumor
0.3
412
Normal
0.2
641
Tumor
0.2
488
Normal
0.2
1032
Normal
0.2
195
Tumor
0.2
723
Tumor
0.2
416
Normal
0.2
392
Normal
0.2
672
Normal
0.2
146
Normal
0.2
851
Tumor
0.2
312
Normal
0.2
484
Normal
0.2
867
Tumor
0.2
366
Normal
0.2
328
Normal
0.2
477
Tumor
0.2
185
Tumor
0.2
341
Tumor
0.2
1022
Normal
0.2
944
Normal
0.2
952
Normal
0.2
526
Normal
0.2
714
Normal
0.2
785
Tumor
0.2
914
Normal
0.2
982
Normal
0.2
922
Normal
0.2
1027
Tumor
0.2
142
Normal
0.2
431
Tumor
0.2
686
Normal
0.1
421
Tumor
0.1
926
Normal
0.1
472
Normal
0.1
728
Normal
0.1
423
Tumor
0.1
716
Normal
0.1
433
Tumor
0.1
558
Normal
0.1
571
Tumor
0.1
546
Normal
0.1
816
Normal
0.1
696
Normal
0.1
874
Normal
0.1
756
Normal
0.1
883
Tumor
0.1
411
Tumor
0.1
386
Normal
0.1
518
Normal
0.1
494
Normal
0.1
873
Tumor
0.1
434
Normal
0.1
918
Normal
0.1
113
Tumor
0.1
221
Tumor
0.1
445
Tumor
0.1
145
Tumor
0.1
384
Normal
0.1
188
Normal
0.1
228
Normal
0.1
364
Normal
0.1
954
Normal
0.1
617
Tumor
0.1
978
Normal
0.1
363
Tumor
0.1
1028
Normal
0.0
271
Tumor
0.0
268
Normal
0.0
284
Normal
0.0
257
Tumor
0.0
981
Tumor
0.0
147
Tumor
0.0
722
Normal
0.0
1042
Normal
0.0
474
Normal
0.0
223
Tumor
0.0
187
Tumor
0.0
955
Tumor
0.0
976
Normal
0.0
396
Normal
0.0
956
Normal
0.0
968
Normal
0.0
745
Tumor
0.0
141
Tumor
0.0
444
Normal
0.0
863
Tumor
0.0
468
Normal
0.0
924
Normal
-0.1
966
Normal
-0.1
212
Normal
-0.1
937
Tumor
-0.1
695
Tumor
-0.1
487
Tumor
-0.1
852
Normal
-0.1
217
Tumor
-0.1
727
Tumor
-0.1
574
Normal
-0.1
483
Tumor
-0.1
123
Tumor
-0.1
858
Normal
-0.1
861
Tumor
-0.1
191
Tumor
-0.1
415
Tumor
-0.1
958
Normal
-0.1
516
Normal
-0.1
135
Tumor
-0.1
647
Tumor
-0.2
567
Tumor
-0.2
267
Tumor
-0.2
313
Tumor
-0.2
1015
Tumor
-0.2
537
Tumor
-0.2
425
Tumor
-0.2
662
Normal
-0.2
513
Tumor
-0.2
224
Normal
-0.2
916
Normal
-0.2
1031
Tumor
-0.2
557
Tumor
-0.2
913
Tumor
-0.2
1014
Normal
-0.2
391
Tumor
-0.3
517
Tumor
-0.3
461
Tumor
-0.3
538
Normal
-0.3
297
Tumor
-0.3
112
Tumor
-0.3
721
Tumor
-0.3
815
Tumor
-0.3
357
Tumor
-0.3
471
Tumor
-0.3
514
Normal
-0.3
393
Tumor
-0.3
778
Normal
-0.3
715
Tumor
-0.3
478
Normal
-0.3
524
Normal
-0.3
492
Normal
-0.4
351
Tumor
-0.4
515
Tumor
-0.4
277
Tumor
-0.4
713
Tumor
-0.4
777
Tumor
-0.4
473
Tumor
-0.4
977
Tumor
-0.4
743
Tumor
-0.4
161
Tumor
-0.4
671
Tumor
-0.4
498
Normal
-0.4
192
Normal
-0.5
413
Tumor
-0.5
1021
Tumor
-0.5
951
Tumor
-0.5
1026
Normal
-0.5
331
Tumor
-0.5
963
Tumor
-0.5
455
Tumor
-0.5
1043
Tumor
-0.6
953
Tumor
-0.6
857
Tumor
-0.6
921
Tumor
-0.6
213
Tumor
-0.6
881
Tumor
-0.6
685
Tumor
-0.6
463
Tumor
-0.6
493
Tumor
-0.6
536
Normal
-0.6
1044
Normal
-0.6
383
Tumor
-0.7
724
Normal
-0.7
663
Tumor
-0.7
447
Tumor
-0.7
125
Tumor
-0.7
737
Tumor
-0.7
375
Tumor
-0.7
813
Tumor
-0.7
975
Tumor
-0.8
367
Tumor
-0.8
814
Normal
-0.8
554
Normal
-0.8
823
Tumor
-0.8
865
Tumor
-0.8
1013
Tumor
-0.8
957
Tumor
-0.8
525
Tumor
-0.8
573
Tumor
-0.8
527
Tumor
-0.8
877
Tumor
-0.9
923
Tumor
-0.9
497
Tumor
-0.9
385
Tumor
-0.9
553
Tumor
-0.9
533
Tumor
-0.9
491
Tumor
-0.9
355
Tumor
-0.9
965
Tumor
-1.0
285
Tumor
-1.0
427
Tumor
-1.0
1025
Tumor
-1.0
983
Tumor
-1.0
697
Tumor
-1.1
535
Tumor
-1.1
343
Tumor
-1.1
467
Tumor
-1.1
523
Tumor
-1.1
943
Tumor
-1.1
395
Tumor
-1.2
131
Tumor
-1.2
327
Tumor
-1.2
311
Tumor
-1.2
917
Tumor
-1.4
817
Tumor
-1.4
283
Tumor
-1.6
545
Tumor
-1.6
661
Tumor
-1.6
211
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
