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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDK4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
927.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
916.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
534.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
504.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
322.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
275.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
238.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
223.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
215.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
207.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
191.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
190.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
177.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
174.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
174.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
149.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
149.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
149.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
132.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
130.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
126.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
126.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
126.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
126.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
122.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
121.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
121.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
118.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
117.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
117.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
117.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
116.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
115.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
110.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
104.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
101.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
97.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
97.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
96.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
94.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
94.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
93.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
89.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
88.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
87.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
83.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
82.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
82.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
81.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
81.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
79.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
78.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
78.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
77.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
77.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
77.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
77.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
74.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
73.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
70.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
70.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
66.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
65.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
64.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
64.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
64.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
60.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
60.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
59.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
57.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
56.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
56.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
54.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
50.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
49.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
46.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
46.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
45.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
44.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
44.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
43.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
43.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
42.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
40.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
36.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDK4 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.2
Number of samples
231
Samples
Sample
Description
TPM
DO45133
0 years, male, NA, stage:3, dead, 660 days
847.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
822.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
798.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
547.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
539.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
521.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
470.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
325.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
317.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
315.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
276.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
268.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
187.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
177.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
163.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
135.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
130.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
130.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
129.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
123.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
110.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
104.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
104.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
97.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
96.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
86.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
85.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
82.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
82.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
79.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
74.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
73.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
72.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
71.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
71.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
68.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
65.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
64.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
64.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
62.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
60.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
60.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
58.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
58.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
57.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
56.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
55.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
54.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
54.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
53.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
51.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
49.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
46.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
45.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
44.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
36.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
1.6
481
Tumor
1.6
816
Normal
1.4
214
Normal
1.3
922
Normal
1.3
482
Normal
1.2
618
Normal
1.2
852
Normal
1.1
186
Normal
1.1
1028
Normal
1.1
714
Normal
1.1
968
Normal
1.1
332
Normal
1.1
428
Normal
1.0
356
Normal
1.0
432
Normal
1.0
564
Normal
1.0
341
Tumor
1.0
124
Normal
1.0
738
Normal
1.0
716
Normal
1.0
352
Normal
1.0
728
Normal
1.0
648
Normal
0.9
434
Normal
0.9
488
Normal
0.9
298
Normal
0.9
958
Normal
0.9
448
Normal
0.9
172
Normal
0.8
128
Normal
0.8
818
Normal
0.8
477
Tumor
0.8
1022
Normal
0.8
111
Normal
0.8
426
Normal
0.8
462
Normal
0.8
161
Tumor
0.8
414
Normal
0.8
494
Normal
0.8
126
Normal
0.8
314
Normal
0.8
452
Normal
0.8
742
Normal
0.8
982
Normal
0.8
344
Normal
0.8
354
Normal
0.8
424
Normal
0.8
636
Normal
0.7
878
Normal
0.7
1014
Normal
0.7
468
Normal
0.7
546
Normal
0.7
944
Normal
0.7
824
Normal
0.7
423
Tumor
0.7
686
Normal
0.6
464
Normal
0.6
1032
Normal
0.6
662
Normal
0.6
456
Normal
0.6
574
Normal
0.6
368
Normal
0.6
786
Normal
0.6
484
Normal
0.6
722
Normal
0.6
882
Normal
0.6
954
Normal
0.6
615
Tumor
0.6
744
Normal
0.6
358
Normal
0.6
664
Normal
0.6
756
Normal
0.6
918
Normal
0.6
138
Normal
0.6
114
Normal
0.6
232
Normal
0.5
526
Normal
0.5
914
Normal
0.5
868
Normal
0.5
483
Tumor
0.5
474
Normal
0.5
362
Normal
0.5
715
Tumor
0.5
628
Normal
0.5
558
Normal
0.5
746
Normal
0.5
926
Normal
0.5
956
Normal
0.5
444
Normal
0.4
1016
Normal
0.4
866
Normal
0.4
328
Normal
0.4
261
Tumor
0.4
858
Normal
0.4
966
Normal
0.4
698
Normal
0.4
262
Normal
0.4
568
Normal
0.4
938
Normal
0.4
196
Normal
0.4
142
Normal
0.4
696
Normal
0.4
642
Normal
0.3
366
Normal
0.3
554
Normal
0.3
132
Normal
0.3
924
Normal
0.3
218
Normal
0.3
412
Normal
0.3
916
Normal
0.3
127
Tumor
0.3
394
Normal
0.3
1027
Tumor
0.3
162
Normal
0.3
976
Normal
0.3
136
Normal
0.3
723
Tumor
0.3
778
Normal
0.3
528
Normal
0.2
393
Tumor
0.2
384
Normal
0.2
416
Normal
0.2
258
Normal
0.2
516
Normal
0.2
518
Normal
0.2
146
Normal
0.2
224
Normal
0.2
222
Normal
0.2
952
Normal
0.2
864
Normal
0.2
984
Normal
0.2
616
Normal
0.2
912
Normal
0.2
284
Normal
0.2
312
Normal
0.1
364
Normal
0.1
964
Normal
0.1
1044
Normal
0.1
353
Tumor
0.1
884
Normal
0.1
955
Tumor
0.1
361
Tumor
0.1
513
Tumor
0.1
392
Normal
0.1
396
Normal
0.1
472
Normal
0.1
534
Normal
0.1
433
Tumor
0.1
436
Normal
0.1
231
Tumor
0.1
672
Normal
0.1
524
Normal
0.0
278
Normal
0.0
388
Normal
0.0
721
Tumor
0.0
268
Normal
0.0
478
Normal
0.0
538
Normal
0.0
466
Normal
0.0
188
Normal
0.0
148
Normal
0.0
492
Normal
0.0
357
Tumor
0.0
286
Normal
0.0
272
Normal
0.0
785
Tumor
0.0
1042
Normal
0.0
228
Normal
0.0
498
Normal
-0.1
376
Normal
-0.1
915
Tumor
-0.1
978
Normal
-0.1
171
Tumor
-0.1
563
Tumor
-0.1
185
Tumor
-0.1
627
Tumor
-0.1
147
Tumor
-0.1
572
Normal
-0.1
755
Tumor
-0.1
415
Tumor
-0.2
1026
Normal
-0.2
953
Tumor
-0.2
517
Tumor
-0.2
867
Tumor
-0.2
431
Tumor
-0.2
873
Tumor
-0.2
386
Normal
-0.2
217
Tumor
-0.2
446
Normal
-0.2
741
Tumor
-0.2
112
Tumor
-0.2
514
Normal
-0.2
192
Normal
-0.3
465
Tumor
-0.3
1046
Normal
-0.3
874
Normal
-0.3
257
Tumor
-0.3
1045
Tumor
-0.3
862
Normal
-0.3
145
Tumor
-0.3
411
Tumor
-0.3
435
Tumor
-0.3
635
Tumor
-0.3
137
Tumor
-0.4
493
Tumor
-0.4
666
Normal
-0.4
141
Tumor
-0.4
727
Tumor
-0.4
967
Tumor
-0.4
445
Tumor
-0.4
187
Tumor
-0.4
981
Tumor
-0.4
422
Normal
-0.5
814
Normal
-0.5
487
Tumor
-0.5
267
Tumor
-0.5
883
Tumor
-0.5
365
Tumor
-0.5
212
Normal
-0.5
461
Tumor
-0.6
271
Tumor
-0.6
963
Tumor
-0.6
913
Tumor
-0.6
553
Tumor
-0.6
857
Tumor
-0.6
911
Tumor
-0.6
213
Tumor
-0.7
695
Tumor
-0.7
665
Tumor
-0.7
447
Tumor
-0.7
383
Tumor
-0.7
427
Tumor
-0.7
977
Tumor
-0.7
313
Tumor
-0.7
297
Tumor
-0.8
327
Tumor
-0.8
1043
Tumor
-0.8
685
Tumor
-0.8
123
Tumor
-0.8
641
Tumor
-0.8
195
Tumor
-0.8
863
Tumor
-0.8
451
Tumor
-0.8
823
Tumor
-0.8
1031
Tumor
-0.9
113
Tumor
-0.9
491
Tumor
-0.9
647
Tumor
-0.9
331
Tumor
-1.0
421
Tumor
-1.0
191
Tumor
-1.0
536
Normal
-1.0
777
Tumor
-1.0
471
Tumor
-1.0
443
Tumor
-1.0
617
Tumor
-1.0
515
Tumor
-1.0
571
Tumor
-1.0
311
Tumor
-1.0
713
Tumor
-1.0
125
Tumor
-1.0
1013
Tumor
-1.1
557
Tumor
-1.1
135
Tumor
-1.1
1041
Tumor
-1.1
943
Tumor
-1.1
957
Tumor
-1.1
363
Tumor
-1.1
567
Tumor
-1.1
881
Tumor
-1.1
467
Tumor
-1.1
343
Tumor
-1.1
663
Tumor
-1.1
351
Tumor
-1.1
277
Tumor
-1.2
861
Tumor
-1.2
425
Tumor
-1.2
367
Tumor
-1.2
573
Tumor
-1.2
743
Tumor
-1.2
975
Tumor
-1.2
851
Tumor
-1.2
925
Tumor
-1.2
391
Tumor
-1.2
227
Tumor
-1.3
221
Tumor
-1.3
375
Tumor
-1.3
1025
Tumor
-1.3
737
Tumor
-1.3
965
Tumor
-1.3
671
Tumor
-1.3
745
Tumor
-1.3
223
Tumor
-1.3
497
Tumor
-1.4
917
Tumor
-1.4
473
Tumor
-1.4
1015
Tumor
-1.4
813
Tumor
-1.5
661
Tumor
-1.5
355
Tumor
-1.5
463
Tumor
-1.5
413
Tumor
-1.5
951
Tumor
-1.5
283
Tumor
-1.5
724
Normal
-1.5
877
Tumor
-1.5
537
Tumor
-1.6
923
Tumor
-1.6
817
Tumor
-1.6
387
Tumor
-1.6
815
Tumor
-1.7
525
Tumor
-1.7
455
Tumor
-1.7
523
Tumor
-1.8
983
Tumor
-1.8
1021
Tumor
-1.8
921
Tumor
-1.8
395
Tumor
-1.8
131
Tumor
-1.9
285
Tumor
-1.9
211
Tumor
-1.9
697
Tumor
-1.9
937
Tumor
-2.0
385
Tumor
-2.1
527
Tumor
-2.1
865
Tumor
-2.1
533
Tumor
-2.2
545
Tumor
-2.2
535
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.