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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFAB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
108.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
353.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
288.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
251.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
250.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
234.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
220.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
219.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
212.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
206.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
196.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
195.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
191.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
191.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
191.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
190.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
184.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
183.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
183.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
182.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
181.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
181.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
180.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
179.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
177.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
177.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
175.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
167.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
167.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
164.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
164.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
163.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
163.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
162.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
162.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
157.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
156.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
156.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
155.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
155.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
154.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
154.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
152.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
151.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
150.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
149.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
149.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
149.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
148.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
147.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
146.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
145.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
145.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
145.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
144.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
144.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
144.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
143.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
143.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
143.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
143.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
142.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
142.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
142.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
142.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
141.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
141.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
141.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
141.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
140.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
139.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
139.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
139.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
139.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
138.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
137.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
136.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
136.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
136.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
134.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
134.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
134.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
134.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
134.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
132.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
131.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
131.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
130.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
130.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
128.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
128.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
128.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
128.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
127.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
127.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
127.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
126.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
126.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
125.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
125.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
125.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
125.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
124.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
124.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
124.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
124.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
124.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
124.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
124.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
124.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
123.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
123.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
123.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
123.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
121.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
121.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
121.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
121.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
120.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
120.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
120.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
120.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
119.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
119.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
118.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
117.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
117.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
116.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
116.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
116.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
116.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
116.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
115.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
115.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
115.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
115.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
115.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
115.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
115.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
115.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
115.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
114.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
114.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
114.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
114.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
113.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
113.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
113.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
112.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
112.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
112.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
111.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
111.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
110.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
110.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
110.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
110.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
109.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
109.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
109.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
109.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
108.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
108.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
108.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
108.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
108.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
108.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
108.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
107.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
106.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
106.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
105.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
105.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
105.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
105.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
105.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
105.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
105.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
105.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
105.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
105.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
103.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
103.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
103.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
103.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
103.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
103.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
103.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
103.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
102.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
102.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
102.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
102.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
101.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
100.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
100.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
100.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
99.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
99.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
98.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
98.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
98.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
97.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
97.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
97.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
96.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
96.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
96.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
96.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
96.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
96.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
95.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
95.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
95.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
94.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
94.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
94.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
94.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
94.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
94.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
94.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
93.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
93.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
93.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
93.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
93.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
92.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
92.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
92.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
92.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
92.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
92.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
91.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
91.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
91.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
91.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
89.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
89.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
89.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
89.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
89.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
88.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
88.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
88.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
88.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
88.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
88.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
87.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
87.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
87.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
86.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
86.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
86.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
86.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
85.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
85.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
84.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
84.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
84.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
84.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
84.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
84.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
84.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
84.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
84.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
84.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
83.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
83.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
83.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
82.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
81.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
80.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
80.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
80.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
79.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
79.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
78.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
78.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
78.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
78.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
77.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
77.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
75.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
75.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
75.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
75.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
74.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
74.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
73.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
73.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
73.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
72.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
72.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
71.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
71.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
71.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
70.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
70.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
70.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
69.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
69.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
68.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
68.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
68.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
68.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
68.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
67.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
67.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
67.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
66.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
66.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
66.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
66.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
65.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
65.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
64.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
64.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
64.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
63.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
63.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
63.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
63.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
62.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
62.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
61.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
60.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
60.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
58.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
58.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
57.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
56.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
56.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
56.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
53.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
51.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
51.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
51.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
49.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
48.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
47.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
42.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFAB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.1
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
291.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
272.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
257.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
223.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
222.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
190.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
189.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
188.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
186.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
185.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
158.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
149.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
147.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
140.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
138.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
131.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
130.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
126.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
125.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
123.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
123.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
120.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
120.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
119.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
116.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
116.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
116.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
115.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
115.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
115.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
114.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
113.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
112.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
112.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
112.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
111.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
110.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
108.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
108.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
107.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
106.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
105.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
105.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
105.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
104.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
104.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
104.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
103.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
103.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
102.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
102.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
102.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
100.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
99.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
99.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
99.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
98.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
95.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
95.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
94.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
93.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
93.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
93.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
92.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
92.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
92.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
91.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
90.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
90.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
89.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
89.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
89.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
89.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
89.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
89.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
89.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
88.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
88.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
88.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
87.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
87.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
87.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
86.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
85.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
84.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
84.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
84.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
83.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
83.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
83.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
82.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
82.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
82.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
82.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
82.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
81.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
81.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
80.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
79.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
78.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
78.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
77.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
77.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
77.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
77.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
76.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
75.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
75.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
75.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
75.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
75.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
74.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
74.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
74.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
73.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
73.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
73.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
73.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
72.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
72.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
72.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
72.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
72.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
72.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
71.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
71.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
71.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
71.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
70.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
70.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
70.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
69.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
69.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
68.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
68.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
68.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
68.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
67.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
67.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
67.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
67.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
67.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
66.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
66.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
65.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
64.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
64.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
64.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
64.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
63.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
62.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
61.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
61.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
61.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
60.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
60.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
60.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
60.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
59.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
59.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
58.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
58.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
58.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
58.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
57.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
57.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
57.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
57.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
56.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
56.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
56.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
56.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
56.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
56.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
56.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
55.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
55.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
55.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
53.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
53.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
53.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
52.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
52.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
52.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
52.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
50.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
49.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
48.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
48.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
47.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
47.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
46.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
46.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
45.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
44.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
44.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
43.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
39.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.7
883
Tumor
1.2
695
Tumor
1.1
627
Tumor
1.1
1041
Tumor
1.1
915
Tumor
1.0
477
Tumor
0.8
1013
Tumor
0.7
465
Tumor
0.7
981
Tumor
0.6
571
Tumor
0.6
411
Tumor
0.6
546
Normal
0.5
741
Tumor
0.5
443
Tumor
0.5
1027
Tumor
0.5
937
Tumor
0.5
231
Tumor
0.5
911
Tumor
0.5
785
Tumor
0.5
128
Normal
0.5
448
Normal
0.5
487
Tumor
0.4
698
Normal
0.4
484
Normal
0.4
755
Tumor
0.4
513
Tumor
0.4
867
Tumor
0.4
452
Normal
0.4
1022
Normal
0.4
1045
Tumor
0.4
957
Tumor
0.4
878
Normal
0.4
412
Normal
0.4
955
Tumor
0.3
742
Normal
0.3
1028
Normal
0.3
746
Normal
0.3
114
Normal
0.3
554
Normal
0.3
924
Normal
0.3
534
Normal
0.3
462
Normal
0.3
923
Tumor
0.3
518
Normal
0.3
473
Tumor
0.3
944
Normal
0.3
232
Normal
0.3
738
Normal
0.3
553
Tumor
0.3
922
Normal
0.3
963
Tumor
0.3
327
Tumor
0.3
472
Normal
0.2
952
Normal
0.2
723
Tumor
0.2
488
Normal
0.2
376
Normal
0.2
423
Tumor
0.2
341
Tumor
0.2
342
Normal
0.2
393
Tumor
0.2
113
Tumor
0.2
494
Normal
0.2
1026
Normal
0.2
388
Normal
0.2
728
Normal
0.2
966
Normal
0.2
171
Tumor
0.2
474
Normal
0.2
526
Normal
0.2
515
Tumor
0.2
938
Normal
0.2
686
Normal
0.2
1043
Tumor
0.2
356
Normal
0.2
777
Tumor
0.2
914
Normal
0.2
172
Normal
0.2
745
Tumor
0.2
861
Tumor
0.2
1032
Normal
0.2
982
Normal
0.2
714
Normal
0.2
615
Tumor
0.2
415
Tumor
0.2
222
Normal
0.2
328
Normal
0.2
538
Normal
0.2
533
Tumor
0.1
1015
Tumor
0.1
557
Tumor
0.1
426
Normal
0.1
525
Tumor
0.1
697
Tumor
0.1
916
Normal
0.1
365
Tumor
0.1
466
Normal
0.1
214
Normal
0.1
516
Normal
0.1
111
Normal
0.1
913
Tumor
0.1
416
Normal
0.1
968
Normal
0.1
132
Normal
0.1
535
Tumor
0.1
956
Normal
0.1
227
Tumor
0.1
136
Normal
0.1
355
Tumor
0.1
394
Normal
0.1
568
Normal
0.1
528
Normal
0.1
713
Tumor
0.1
228
Normal
0.1
527
Tumor
0.1
162
Normal
0.1
918
Normal
0.1
873
Tumor
0.1
965
Tumor
0.1
124
Normal
0.1
436
Normal
0.1
647
Tumor
0.1
361
Tumor
0.1
123
Tumor
0.1
267
Tumor
0.1
186
Normal
0.1
142
Normal
0.1
422
Normal
0.1
715
Tumor
0.1
882
Normal
0.1
196
Normal
0.1
212
Normal
0.1
272
Normal
0.1
778
Normal
0.1
696
Normal
0.1
862
Normal
0.0
1021
Tumor
0.0
148
Normal
0.0
1016
Normal
0.0
514
Normal
0.0
138
Normal
0.0
964
Normal
0.0
278
Normal
0.0
618
Normal
0.0
468
Normal
0.0
298
Normal
0.0
816
Normal
0.0
261
Tumor
0.0
112
Tumor
0.0
366
Normal
0.0
481
Tumor
0.0
358
Normal
0.0
451
Tumor
0.0
721
Tumor
0.0
392
Normal
0.0
953
Tumor
0.0
262
Normal
0.0
258
Normal
0.0
362
Normal
0.0
126
Normal
0.0
286
Normal
0.0
1044
Normal
0.0
464
Normal
0.0
977
Tumor
0.0
127
Tumor
0.0
926
Normal
0.0
967
Tumor
0.0
716
Normal
0.0
357
Tumor
0.0
435
Tumor
0.0
636
Normal
0.0
344
Normal
0.0
1014
Normal
0.0
482
Normal
0.0
492
Normal
0.0
864
Normal
0.0
396
Normal
0.0
218
Normal
0.0
642
Normal
0.0
386
Normal
0.0
874
Normal
0.0
976
Normal
-0.1
145
Tumor
-0.1
161
Tumor
-0.1
635
Tumor
-0.1
663
Tumor
-0.1
524
Normal
-0.1
428
Normal
-0.1
868
Normal
-0.1
756
Normal
-0.1
312
Normal
-0.1
536
Normal
-0.1
866
Normal
-0.1
364
Normal
-0.1
722
Normal
-0.1
572
Normal
-0.1
414
Normal
-0.1
387
Tumor
-0.1
352
Normal
-0.1
984
Normal
-0.1
744
Normal
-0.1
332
Normal
-0.1
786
Normal
-0.1
954
Normal
-0.1
823
Tumor
-0.1
564
Normal
-0.1
491
Tumor
-0.1
537
Tumor
-0.1
146
Normal
-0.1
858
Normal
-0.1
368
Normal
-0.1
446
Normal
-0.1
284
Normal
-0.1
483
Tumor
-0.1
958
Normal
-0.2
912
Normal
-0.2
563
Tumor
-0.2
852
Normal
-0.2
424
Normal
-0.2
523
Tumor
-0.2
1025
Tumor
-0.2
456
Normal
-0.2
188
Normal
-0.2
558
Normal
-0.2
727
Tumor
-0.2
314
Normal
-0.2
662
Normal
-0.2
1042
Normal
-0.2
268
Normal
-0.2
857
Tumor
-0.2
141
Tumor
-0.2
461
Tumor
-0.2
354
Normal
-0.2
431
Tumor
-0.2
432
Normal
-0.3
1046
Normal
-0.3
313
Tumor
-0.3
616
Normal
-0.3
517
Tumor
-0.3
648
Normal
-0.3
391
Tumor
-0.3
574
Normal
-0.3
628
Normal
-0.3
1031
Tumor
-0.3
137
Tumor
-0.3
478
Normal
-0.3
497
Tumor
-0.3
664
Normal
-0.3
223
Tumor
-0.3
884
Normal
-0.4
367
Tumor
-0.4
363
Tumor
-0.4
824
Normal
-0.4
493
Tumor
-0.4
817
Tumor
-0.4
217
Tumor
-0.4
135
Tumor
-0.4
185
Tumor
-0.4
383
Tumor
-0.4
498
Normal
-0.4
427
Tumor
-0.4
951
Tumor
-0.4
195
Tumor
-0.4
353
Tumor
-0.4
434
Normal
-0.4
433
Tumor
-0.5
921
Tumor
-0.5
224
Normal
-0.5
813
Tumor
-0.5
851
Tumor
-0.5
471
Tumor
-0.5
685
Tumor
-0.5
384
Normal
-0.5
724
Normal
-0.5
187
Tumor
-0.5
943
Tumor
-0.5
573
Tumor
-0.5
447
Tumor
-0.5
192
Normal
-0.5
978
Normal
-0.5
445
Tumor
-0.5
444
Normal
-0.6
257
Tumor
-0.6
665
Tumor
-0.6
743
Tumor
-0.6
413
Tumor
-0.6
617
Tumor
-0.6
395
Tumor
-0.6
297
Tumor
-0.6
545
Tumor
-0.6
567
Tumor
-0.6
865
Tumor
-0.6
818
Normal
-0.6
351
Tumor
-0.7
191
Tumor
-0.7
877
Tumor
-0.7
881
Tumor
-0.7
737
Tumor
-0.7
983
Tumor
-0.7
221
Tumor
-0.7
421
Tumor
-0.7
975
Tumor
-0.7
271
Tumor
-0.7
213
Tumor
-0.8
814
Normal
-0.8
917
Tumor
-0.8
666
Normal
-0.8
672
Normal
-0.8
863
Tumor
-0.8
815
Tumor
-0.8
455
Tumor
-0.9
311
Tumor
-0.9
277
Tumor
-0.9
147
Tumor
-0.9
211
Tumor
-0.9
131
Tumor
-0.9
467
Tumor
-1.0
425
Tumor
-1.0
463
Tumor
-1.0
331
Tumor
-1.0
641
Tumor
-1.0
385
Tumor
-1.1
285
Tumor
-1.1
343
Tumor
-1.1
375
Tumor
-1.2
125
Tumor
-1.2
661
Tumor
-1.3
671
Tumor
-1.3
283
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
