MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:14.4 nTPM
GTEx:17.3 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:51.9 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.3
2219 Male, age 76, both hemispheres 12.5
1870 Female, age 42, unknown 11.1
2666 Male, age 74, left hemisphere 10.1
1827 Male, age 72, unknown 9.8
1833 Male, age 53, unknown 9.4
2019 Male, age 18, unknown 9.2
2411 Female, age 72, unknown 8.3
2828 Female, age 72, unknown 7.9
1830 Male, age 51, unknown 7.4
2586 Male, age 75, left hemisphere 7.2
Dorsal raphe nucleus
nTPM: 10.6
2298 Female, age 72, unknown 12.8
1828 Male, age 53, unknown 10.4
2047 Male, age 72, unknown 10.3
2750 Male, age 76, both hemispheres 10.1
2016 Female, age 72, unknown 9.2
Inferior colliculus
nTPM: 11.7
2097 Female, age 72, unknown 14.1
2849 Male, age 72, unknown 11.7
1848 Female, age 42, unknown 10.8
1890 Male, age 53, unknown 10.3
Median raphe nucleus
nTPM: 14.4
2220 Male, age 76, midline 14.4
Periaquaductal grey, anterior
nTPM: 11.7
2502 Female, age 75, unknown 12.6
1947 Male, age 18, unknown 11.6
1795 Male, age 51, unknown 10.8
Periaquaductal grey, dorsal
nTPM: 11.0
1840 Male, age 53, unknown 14.3
2850 Male, age 76, both hemispheres 10.4
2464 Female, age 72, unknown 9.8
1831 Male, age 72, unknown 9.6
Periaquaductal grey, lateral
nTPM: 8.9
2140 Male, age 76, both hemispheres 10.1
2272 Male, age 74, both hemispheres 8.5
2053 Male, age 18, unknown 8.2
Pretectal area
nTPM: 11.3
2667 Female, age 75, unknown 13.1
2224 Female, age 72, unknown 13.0
1817 Female, age 42, unknown 12.5
1816 Male, age 51, unknown 11.7
2007 Male, age 72, unknown 11.7
2273 Male, age 74, both hemispheres 11.6
1944 Female, age 72, unknown 10.5
1815 Male, age 53, unknown 10.1
2407 Male, age 75, both hemispheres 10.1
2825 Male, age 18, unknown 10.0
2316 Male, age 76, right hemisphere 9.7
Red nucleus
nTPM: 8.8
1821 Female, age 72, unknown 11.0
2725 Female, age 75, unknown 10.3
2588 Male, age 74, left hemisphere 9.9
2785 Male, age 18, unknown 9.0
2227 Male, age 72, unknown 8.9
2503 Female, age 72, unknown 8.5
2769 Male, age 72, unknown 8.5
1954 Female, age 42, unknown 8.3
1865 Male, age 51, unknown 8.2
1904 Male, age 53, unknown 8.0
2584 Male, age 75, left hemisphere 7.5
2823 Male, age 76, right hemisphere 7.5
Substantia nigra
nTPM: 12.5
2241 Male, age 72, unknown 16.5
1916 Female, age 42, unknown 16.4
1851 Male, age 51, unknown 15.1
2409 Female, age 72, unknown 14.7
1941 Male, age 53, unknown 12.9
2699 Male, age 18, unknown 12.5
2665 Male, age 74, both hemispheres 11.8
1889 Female, age 72, unknown 9.9
2583 Male, age 75, right hemisphere 7.6
2590 Female, age 75, unknown 7.3
Superior colliculus
nTPM: 10.5
1839 Male, age 51, unknown 11.8
2261 Male, age 18, unknown 11.8
2587 Male, age 74, left hemisphere 11.6
2668 Female, age 75, unknown 11.5
1796 Male, age 53, unknown 11.4
2087 Female, age 72, unknown 11.1
1895 Male, age 76, right hemisphere 10.9
2664 Male, age 75, both hemispheres 9.6
1995 Male, age 72, unknown 7.8
1913 Female, age 42, unknown 7.3
Ventral tegmental area
nTPM: 11.3
1915 Female, age 42, unknown 13.6
2218 Male, age 76, both hemispheres 13.2
2223 Female, age 72, unknown 11.9
1942 Male, age 51, unknown 10.7
2021 Male, age 53, unknown 9.7
2410 Female, age 72, unknown 8.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 139

Max nTPM: 31.4
Min nTPM: 11.1
Std nTPM: 3.2
Median nTPM: 16.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 24.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 23.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 23.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 22.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 22.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 24.8
Min nTPM: 19.6
Sample A Female 24.8
Sample B Female 19.6
Sample C Male 23.0
Sample D Male 20.2
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 24.3
Min nTPM: 22.0
Sample A Female 24.3
Sample B Female 22.0
Sample C Male 23.7
Sample D Male 22.7
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 24.3
Min nTPM: 20.1
Sample B Female 22.2
Sample C Male 24.3
Sample D Male 20.1
Superior colliculi
nTPM: 22.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 20.6
Sample A Female 22.9
Sample B Female 20.6
Sample C Male 22.7
Sample D Male 21.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.9
Samples: 4

Max nTPM: 53.5
Min nTPM: 48.1
Sample A Male 52.6
Sample B Male 53.2
Sample C Female 48.1
Sample D Female 53.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
69262119 Antisense, RP_050224_01_B04, Mouse strain C57BL/6J (56 days, male) 5.7

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