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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
51.8
nTPM
HPA Brain:
60.0
nTPM
GTEx:
51.8
nTPM
FANTOM5:
30.9
Scaled Tags Per Million
Pig:
62.4
nTPM
Mouse:
87.8
nTPM
Allen mouse:
1.4
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 57.4
2586
Male, age 75, left hemisphere
84.4
2019
Male, age 18, unknown
65.3
2666
Male, age 74, left hemisphere
59.1
1827
Male, age 72, unknown
58.1
2828
Female, age 72, unknown
55.9
2411
Female, age 72, unknown
53.7
1870
Female, age 42, unknown
51.3
1833
Male, age 53, unknown
49.4
2219
Male, age 76, both hemispheres
48.6
1830
Male, age 51, unknown
48.3
Dorsal raphe nucleus nTPM: 51.7
1828
Male, age 53, unknown
58.4
2047
Male, age 72, unknown
55.8
2298
Female, age 72, unknown
50.1
2016
Female, age 72, unknown
47.6
2750
Male, age 76, both hemispheres
46.5
Inferior colliculus nTPM: 53.2
1848
Female, age 42, unknown
56.5
1890
Male, age 53, unknown
52.6
2097
Female, age 72, unknown
51.9
2849
Male, age 72, unknown
51.7
Median raphe nucleus nTPM: 43.2
2220
Male, age 76, midline
43.2
Periaquaductal grey, anterior nTPM: 52.1
1795
Male, age 51, unknown
55.0
2502
Female, age 75, unknown
50.9
1947
Male, age 18, unknown
50.5
Periaquaductal grey, dorsal nTPM: 45.9
1840
Male, age 53, unknown
49.6
1831
Male, age 72, unknown
45.7
2464
Female, age 72, unknown
45.7
2850
Male, age 76, both hemispheres
42.6
Periaquaductal grey, lateral nTPM: 45.4
2053
Male, age 18, unknown
47.2
2272
Male, age 74, both hemispheres
44.7
2140
Male, age 76, both hemispheres
44.4
Pretectal area nTPM: 56.5
1817
Female, age 42, unknown
71.4
2007
Male, age 72, unknown
69.5
1816
Male, age 51, unknown
68.8
1815
Male, age 53, unknown
63.3
1944
Female, age 72, unknown
61.6
2667
Female, age 75, unknown
55.9
2407
Male, age 75, both hemispheres
53.3
2825
Male, age 18, unknown
46.4
2316
Male, age 76, right hemisphere
44.3
2273
Male, age 74, both hemispheres
43.8
2224
Female, age 72, unknown
43.6
Red nucleus nTPM: 53.2
2584
Male, age 75, left hemisphere
59.5
2785
Male, age 18, unknown
59.0
1821
Female, age 72, unknown
58.9
2588
Male, age 74, left hemisphere
56.4
2769
Male, age 72, unknown
52.1
2725
Female, age 75, unknown
51.8
1865
Male, age 51, unknown
51.6
2503
Female, age 72, unknown
51.5
1954
Female, age 42, unknown
51.3
1904
Male, age 53, unknown
48.8
2227
Male, age 72, unknown
48.7
2823
Male, age 76, right hemisphere
48.7
Substantia nigra nTPM: 60.0
1916
Female, age 42, unknown
68.7
1889
Female, age 72, unknown
68.1
2409
Female, age 72, unknown
64.0
1851
Male, age 51, unknown
61.0
1941
Male, age 53, unknown
60.1
2583
Male, age 75, right hemisphere
58.8
2665
Male, age 74, both hemispheres
56.6
2590
Female, age 75, unknown
55.3
2699
Male, age 18, unknown
53.6
2241
Male, age 72, unknown
53.4
Superior colliculus nTPM: 53.0
2668
Female, age 75, unknown
59.4
2087
Female, age 72, unknown
57.0
2664
Male, age 75, both hemispheres
56.9
2261
Male, age 18, unknown
54.6
1796
Male, age 53, unknown
53.1
1895
Male, age 76, right hemisphere
51.4
1839
Male, age 51, unknown
51.3
2587
Male, age 74, left hemisphere
50.9
1995
Male, age 72, unknown
48.6
1913
Female, age 42, unknown
46.6
Ventral tegmental area nTPM: 52.7
2410
Female, age 72, unknown
64.1
1915
Female, age 42, unknown
57.2
2218
Male, age 76, both hemispheres
50.7
2223
Female, age 72, unknown
48.9
1942
Male, age 51, unknown
48.7
2021
Male, age 53, unknown
46.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 51.8
Samples: 139
Max nTPM: 114.2
Min nTPM: 27.5
Std nTPM: 11.8
Median nTPM: 50.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
114.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
96.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
85.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
83.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
79.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
78.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
72.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
72.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
71.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
65.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
65.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
64.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
63.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
62.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
62.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
61.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
61.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
61.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
61.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
61.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
61.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
60.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
60.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
60.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
59.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
59.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
59.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
58.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
58.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
58.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
58.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
58.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
58.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
57.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
57.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
57.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
56.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
56.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
55.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
55.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
55.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
54.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
54.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
54.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
54.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
54.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
54.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
54.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
53.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
53.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
52.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
52.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
52.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
52.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
52.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
52.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
52.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
52.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
52.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
51.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
51.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
51.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
51.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
51.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
51.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
51.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
50.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
50.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
50.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
50.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
50.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
49.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
49.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
49.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
49.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
48.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
48.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
48.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
48.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
48.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
48.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
47.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
47.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
47.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
47.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
47.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
47.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
47.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
47.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
47.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
47.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
46.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
46.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
46.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
46.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
46.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
45.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
45.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
45.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
45.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
45.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
44.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
44.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
44.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
44.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
44.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
44.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
43.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
43.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
43.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
43.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
43.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
43.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
42.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
42.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
42.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
41.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
41.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
41.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
41.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
40.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
40.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
40.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
40.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
40.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
38.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
38.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
38.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
38.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
37.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
37.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
37.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
36.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
36.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
35.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
34.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
33.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
32.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
27.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 87.8
Samples: 4
Max nTPM: 94.2
Min nTPM: 83.4
Sample A
Male
94.2
Sample B
Male
85.6
Sample C
Female
83.4
Sample D
Female
87.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.