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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SARM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SARM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
297
Tumor
2.4
517
Tumor
1.8
285
Tumor
1.7
425
Tumor
1.6
1043
Tumor
1.6
465
Tumor
1.2
393
Tumor
1.2
1031
Tumor
1.1
444
Normal
1.0
671
Tumor
1.0
743
Tumor
1.0
126
Normal
0.9
881
Tumor
0.9
131
Tumor
0.9
161
Tumor
0.8
386
Normal
0.8
268
Normal
0.7
956
Normal
0.7
192
Normal
0.7
384
Normal
0.7
943
Tumor
0.6
815
Tumor
0.6
124
Normal
0.6
258
Normal
0.6
917
Tumor
0.5
884
Normal
0.5
478
Normal
0.5
666
Normal
0.5
222
Normal
0.5
362
Normal
0.5
641
Tumor
0.5
672
Normal
0.5
224
Normal
0.4
212
Normal
0.4
286
Normal
0.4
814
Normal
0.4
388
Normal
0.4
364
Normal
0.4
188
Normal
0.4
414
Normal
0.4
536
Normal
0.4
392
Normal
0.4
746
Normal
0.4
554
Normal
0.3
1044
Normal
0.3
394
Normal
0.3
358
Normal
0.3
354
Normal
0.3
954
Normal
0.3
114
Normal
0.3
944
Normal
0.3
185
Tumor
0.3
186
Normal
0.3
396
Normal
0.3
232
Normal
0.3
262
Normal
0.3
662
Normal
0.3
434
Normal
0.3
426
Normal
0.3
538
Normal
0.3
786
Normal
0.3
428
Normal
0.3
472
Normal
0.3
976
Normal
0.3
715
Tumor
0.3
272
Normal
0.2
421
Tumor
0.2
1032
Normal
0.2
383
Tumor
0.2
664
Normal
0.2
214
Normal
0.2
298
Normal
0.2
416
Normal
0.2
528
Normal
0.2
368
Normal
0.2
516
Normal
0.2
455
Tumor
0.2
366
Normal
0.2
148
Normal
0.2
914
Normal
0.2
686
Normal
0.2
628
Normal
0.2
196
Normal
0.2
744
Normal
0.2
642
Normal
0.2
132
Normal
0.2
574
Normal
0.2
696
Normal
0.2
492
Normal
0.2
138
Normal
0.2
714
Normal
0.1
716
Normal
0.1
146
Normal
0.1
332
Normal
0.1
191
Tumor
0.1
125
Tumor
0.1
278
Normal
0.1
723
Tumor
0.1
352
Normal
0.1
524
Normal
0.1
518
Normal
0.1
284
Normal
0.1
916
Normal
0.1
162
Normal
0.1
722
Normal
0.1
314
Normal
0.1
546
Normal
0.1
218
Normal
0.1
778
Normal
0.1
343
Tumor
0.1
695
Tumor
0.1
952
Normal
0.1
462
Normal
0.1
172
Normal
0.1
756
Normal
0.1
661
Tumor
0.1
818
Normal
0.1
498
Normal
0.1
1042
Normal
0.1
721
Tumor
0.1
187
Tumor
0.1
456
Normal
0.1
376
Normal
0.1
424
Normal
0.1
344
Normal
0.1
375
Tumor
0.1
356
Normal
0.1
422
Normal
0.1
342
Normal
0.1
452
Normal
0.1
228
Normal
0.1
817
Tumor
0.1
223
Tumor
0.1
665
Tumor
0.1
432
Normal
0.1
464
Normal
0.0
447
Tumor
0.0
535
Tumor
0.0
385
Tumor
0.0
534
Normal
0.0
466
Normal
0.0
353
Tumor
0.0
698
Normal
0.0
922
Normal
0.0
697
Tumor
0.0
312
Normal
0.0
738
Normal
0.0
558
Normal
0.0
636
Normal
0.0
958
Normal
0.0
816
Normal
0.0
878
Normal
0.0
545
Tumor
0.0
468
Normal
0.0
474
Normal
0.0
1028
Normal
0.0
136
Normal
0.0
514
Normal
0.0
217
Tumor
0.0
618
Normal
0.0
568
Normal
0.0
351
Tumor
0.0
311
Tumor
-0.1
938
Normal
-0.1
742
Normal
-0.1
858
Normal
-0.1
526
Normal
-0.1
412
Normal
-0.1
978
Normal
-0.1
813
Tumor
-0.1
195
Tumor
-0.1
785
Tumor
-0.1
213
Tumor
-0.1
328
Normal
-0.1
1016
Normal
-0.1
111
Normal
-0.1
355
Tumor
-0.1
415
Tumor
-0.1
963
Tumor
-0.1
852
Normal
-0.1
857
Tumor
-0.1
1026
Normal
-0.1
713
Tumor
-0.1
882
Normal
-0.1
145
Tumor
-0.1
488
Normal
-0.1
484
Normal
-0.1
221
Tumor
-0.1
741
Tumor
-0.1
211
Tumor
-0.1
616
Normal
-0.1
494
Normal
-0.1
563
Tumor
-0.1
137
Tumor
-0.1
572
Normal
-0.1
142
Normal
-0.1
448
Normal
-0.1
968
Normal
-0.1
966
Normal
-0.1
627
Tumor
-0.2
615
Tumor
-0.2
1022
Normal
-0.2
1027
Tumor
-0.2
823
Tumor
-0.2
461
Tumor
-0.2
482
Normal
-0.2
982
Normal
-0.2
128
Normal
-0.2
924
Normal
-0.2
411
Tumor
-0.2
883
Tumor
-0.2
975
Tumor
-0.2
391
Tumor
-0.2
141
Tumor
-0.2
617
Tumor
-0.2
513
Tumor
-0.2
277
Tumor
-0.2
964
Normal
-0.2
1046
Normal
-0.3
147
Tumor
-0.3
483
Tumor
-0.3
564
Normal
-0.3
1045
Tumor
-0.3
557
Tumor
-0.3
463
Tumor
-0.3
918
Normal
-0.3
745
Tumor
-0.3
443
Tumor
-0.3
436
Normal
-0.3
327
Tumor
-0.3
446
Normal
-0.3
926
Normal
-0.3
357
Tumor
-0.3
648
Normal
-0.3
724
Normal
-0.3
363
Tumor
-0.4
527
Tumor
-0.4
365
Tumor
-0.4
923
Tumor
-0.4
387
Tumor
-0.4
728
Normal
-0.4
571
Tumor
-0.4
135
Tumor
-0.4
395
Tumor
-0.4
433
Tumor
-0.4
525
Tumor
-0.4
413
Tumor
-0.4
824
Normal
-0.4
341
Tumor
-0.4
755
Tumor
-0.4
471
Tumor
-0.4
427
Tumor
-0.4
491
Tumor
-0.4
331
Tumor
-0.4
423
Tumor
-0.4
912
Normal
-0.4
1025
Tumor
-0.4
921
Tumor
-0.5
227
Tumor
-0.5
877
Tumor
-0.5
573
Tumor
-0.5
171
Tumor
-0.5
553
Tumor
-0.5
113
Tumor
-0.5
493
Tumor
-0.5
727
Tumor
-0.5
477
Tumor
-0.5
955
Tumor
-0.5
913
Tumor
-0.5
737
Tumor
-0.5
1015
Tumor
-0.5
361
Tumor
-0.5
283
Tumor
-0.5
515
Tumor
-0.5
497
Tumor
-0.6
685
Tumor
-0.6
533
Tumor
-0.6
467
Tumor
-0.6
663
Tumor
-0.6
261
Tumor
-0.6
777
Tumor
-0.6
647
Tumor
-0.6
127
Tumor
-0.6
1014
Normal
-0.7
537
Tumor
-0.7
271
Tumor
-0.7
267
Tumor
-0.7
481
Tumor
-0.7
1021
Tumor
-0.7
981
Tumor
-0.7
635
Tumor
-0.7
977
Tumor
-0.7
112
Tumor
-0.7
367
Tumor
-0.8
925
Tumor
-0.8
487
Tumor
-0.8
445
Tumor
-0.8
123
Tumor
-0.8
313
Tumor
-0.8
257
Tumor
-0.8
431
Tumor
-0.8
473
Tumor
-0.8
984
Normal
-0.9
451
Tumor
-0.9
851
Tumor
-0.9
983
Tumor
-0.9
953
Tumor
-0.9
523
Tumor
-0.9
435
Tumor
-1.0
965
Tumor
-1.0
957
Tumor
-1.0
911
Tumor
-1.1
967
Tumor
-1.1
937
Tumor
-1.1
915
Tumor
-1.1
1041
Tumor
-1.1
567
Tumor
-1.2
951
Tumor
-1.2
1013
Tumor
-1.5
231
Tumor
-1.6
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
