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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFAF7 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.5
665
Tumor
1.2
981
Tumor
1.1
465
Tumor
1.1
567
Tumor
1.1
435
Tumor
1.1
113
Tumor
1.0
883
Tumor
1.0
367
Tumor
0.9
571
Tumor
0.9
513
Tumor
0.9
537
Tumor
0.9
873
Tumor
0.8
1041
Tumor
0.8
145
Tumor
0.8
123
Tumor
0.8
525
Tumor
0.7
327
Tumor
0.7
171
Tumor
0.7
127
Tumor
0.6
393
Tumor
0.6
341
Tumor
0.6
785
Tumor
0.6
915
Tumor
0.6
191
Tumor
0.6
967
Tumor
0.5
944
Normal
0.5
851
Tumor
0.5
135
Tumor
0.5
267
Tumor
0.5
685
Tumor
0.4
483
Tumor
0.4
261
Tumor
0.4
1013
Tumor
0.4
627
Tumor
0.4
451
Tumor
0.4
481
Tumor
0.4
227
Tumor
0.4
647
Tumor
0.4
427
Tumor
0.3
112
Tumor
0.3
745
Tumor
0.3
462
Normal
0.3
356
Normal
0.3
436
Normal
0.3
514
Normal
0.3
557
Tumor
0.3
756
Normal
0.3
526
Normal
0.3
564
Normal
0.3
363
Tumor
0.3
482
Normal
0.3
466
Normal
0.3
528
Normal
0.3
713
Tumor
0.3
926
Normal
0.3
618
Normal
0.3
937
Tumor
0.2
443
Tumor
0.2
715
Tumor
0.2
1032
Normal
0.2
786
Normal
0.2
572
Normal
0.2
477
Tumor
0.2
741
Tumor
0.2
957
Tumor
0.2
186
Normal
0.2
414
Normal
0.2
1025
Tumor
0.2
1014
Normal
0.2
698
Normal
0.2
534
Normal
0.2
938
Normal
0.2
1043
Tumor
0.2
696
Normal
0.2
428
Normal
0.2
546
Normal
0.2
411
Tumor
0.2
864
Normal
0.2
424
Normal
0.2
494
Normal
0.2
185
Tumor
0.2
361
Tumor
0.2
742
Normal
0.2
473
Tumor
0.2
648
Normal
0.2
862
Normal
0.2
368
Normal
0.1
721
Tumor
0.1
912
Normal
0.1
923
Tumor
0.1
573
Tumor
0.1
125
Tumor
0.1
128
Normal
0.1
858
Normal
0.1
358
Normal
0.1
722
Normal
0.1
1016
Normal
0.1
978
Normal
0.1
723
Tumor
0.1
964
Normal
0.1
671
Tumor
0.1
695
Tumor
0.1
616
Normal
0.1
415
Tumor
0.1
426
Normal
0.1
724
Normal
0.1
824
Normal
0.1
474
Normal
0.1
446
Normal
0.1
913
Tumor
0.1
686
Normal
0.1
982
Normal
0.1
278
Normal
0.1
132
Normal
0.1
448
Normal
0.1
924
Normal
0.1
232
Normal
0.1
257
Tumor
0.1
172
Normal
0.1
868
Normal
0.1
328
Normal
0.1
432
Normal
0.1
568
Normal
0.1
1046
Normal
0.1
914
Normal
0.1
285
Tumor
0.1
628
Normal
0.1
376
Normal
0.1
421
Tumor
0.1
951
Tumor
0.1
195
Tumor
0.1
484
Normal
0.1
395
Tumor
0.1
714
Normal
0.1
866
Normal
0.1
472
Normal
0.1
258
Normal
0.1
664
Normal
0.1
884
Normal
0.1
114
Normal
0.1
984
Normal
0.1
952
Normal
0.1
452
Normal
0.1
314
Normal
0.1
1022
Normal
0.1
738
Normal
0.1
558
Normal
0.1
148
Normal
0.0
716
Normal
0.0
1044
Normal
0.0
918
Normal
0.0
882
Normal
0.0
968
Normal
0.0
922
Normal
0.0
666
Normal
0.0
387
Tumor
0.0
342
Normal
0.0
818
Normal
0.0
488
Normal
0.0
231
Tumor
0.0
487
Tumor
0.0
136
Normal
0.0
662
Normal
0.0
916
Normal
0.0
196
Normal
0.0
958
Normal
0.0
574
Normal
0.0
1042
Normal
0.0
422
Normal
0.0
491
Tumor
0.0
778
Normal
0.0
1015
Tumor
0.0
464
Normal
0.0
447
Tumor
0.0
1031
Tumor
0.0
1026
Normal
0.0
563
Tumor
0.0
162
Normal
0.0
468
Normal
0.0
331
Tumor
0.0
983
Tumor
0.0
636
Normal
0.0
332
Normal
0.0
352
Normal
0.0
516
Normal
-0.1
425
Tumor
-0.1
286
Normal
-0.1
642
Normal
-0.1
1027
Tumor
-0.1
865
Tumor
-0.1
911
Tumor
-0.1
354
Normal
-0.1
697
Tumor
-0.1
1021
Tumor
-0.1
212
Normal
-0.1
353
Tumor
-0.1
746
Normal
-0.1
228
Normal
-0.1
954
Normal
-0.1
284
Normal
-0.1
412
Normal
-0.1
394
Normal
-0.1
111
Normal
-0.1
161
Tumor
-0.1
262
Normal
-0.1
877
Tumor
-0.1
816
Normal
-0.1
554
Normal
-0.1
272
Normal
-0.1
921
Tumor
-0.1
416
Normal
-0.1
396
Normal
-0.1
857
Tumor
-0.1
362
Normal
-0.1
518
Normal
-0.1
874
Normal
-0.1
126
Normal
-0.1
1028
Normal
-0.1
384
Normal
-0.1
955
Tumor
-0.1
355
Tumor
-0.1
956
Normal
-0.1
434
Normal
-0.1
815
Tumor
-0.1
861
Tumor
-0.1
755
Tumor
-0.1
214
Normal
-0.1
142
Normal
-0.1
223
Tumor
-0.1
137
Tumor
-0.1
366
Normal
-0.1
878
Normal
-0.1
976
Normal
-0.1
524
Normal
-0.1
672
Normal
-0.1
433
Tumor
-0.1
615
Tumor
-0.2
392
Normal
-0.2
388
Normal
-0.2
1045
Tumor
-0.2
953
Tumor
-0.2
364
Normal
-0.2
312
Normal
-0.2
351
Tumor
-0.2
298
Normal
-0.2
344
Normal
-0.2
147
Tumor
-0.2
456
Normal
-0.2
635
Tumor
-0.2
641
Tumor
-0.2
357
Tumor
-0.2
222
Normal
-0.2
478
Normal
-0.2
852
Normal
-0.2
224
Normal
-0.2
221
Tumor
-0.2
413
Tumor
-0.2
545
Tumor
-0.2
727
Tumor
-0.2
965
Tumor
-0.2
423
Tumor
-0.2
188
Normal
-0.2
966
Normal
-0.3
187
Tumor
-0.3
663
Tumor
-0.3
124
Normal
-0.3
146
Normal
-0.3
386
Normal
-0.3
461
Tumor
-0.3
313
Tumor
-0.3
533
Tumor
-0.3
444
Normal
-0.3
138
Normal
-0.3
535
Tumor
-0.3
431
Tumor
-0.3
617
Tumor
-0.3
943
Tumor
-0.3
218
Normal
-0.3
963
Tumor
-0.3
517
Tumor
-0.4
493
Tumor
-0.4
538
Normal
-0.4
383
Tumor
-0.4
391
Tumor
-0.4
297
Tumor
-0.4
492
Normal
-0.4
271
Tumor
-0.4
814
Normal
-0.4
365
Tumor
-0.4
977
Tumor
-0.4
867
Tumor
-0.4
467
Tumor
-0.5
823
Tumor
-0.5
375
Tumor
-0.5
536
Normal
-0.5
141
Tumor
-0.5
445
Tumor
-0.5
268
Normal
-0.5
455
Tumor
-0.5
881
Tumor
-0.5
471
Tumor
-0.6
813
Tumor
-0.6
553
Tumor
-0.6
744
Normal
-0.6
527
Tumor
-0.6
277
Tumor
-0.6
498
Normal
-0.6
343
Tumor
-0.6
131
Tumor
-0.6
192
Normal
-0.6
728
Normal
-0.7
661
Tumor
-0.7
515
Tumor
-0.7
385
Tumor
-0.7
217
Tumor
-0.7
777
Tumor
-0.7
213
Tumor
-0.7
463
Tumor
-0.7
497
Tumor
-0.7
283
Tumor
-0.7
311
Tumor
-0.8
743
Tumor
-0.8
523
Tumor
-0.8
917
Tumor
-0.9
817
Tumor
-0.9
211
Tumor
-0.9
863
Tumor
-0.9
975
Tumor
-1.0
737
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
