MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:12.1 nTPM
GTEx:6.8 nTPM
FANTOM5:23.0 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:13.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.1
2219 Male, age 76, both hemispheres 22.1
2586 Male, age 75, left hemisphere 12.9
2019 Male, age 18, unknown 11.4
1870 Female, age 42, unknown 11.1
2666 Male, age 74, left hemisphere 11.0
1830 Male, age 51, unknown 10.9
1827 Male, age 72, unknown 10.7
1833 Male, age 53, unknown 10.4
2828 Female, age 72, unknown 10.4
2411 Female, age 72, unknown 10.2
Dorsal raphe nucleus
nTPM: 10.0
2298 Female, age 72, unknown 11.0
2016 Female, age 72, unknown 10.1
1828 Male, age 53, unknown 9.9
2047 Male, age 72, unknown 9.9
2750 Male, age 76, both hemispheres 9.1
Inferior colliculus
nTPM: 12.0
2849 Male, age 72, unknown 12.9
2097 Female, age 72, unknown 11.9
1890 Male, age 53, unknown 11.6
1848 Female, age 42, unknown 11.4
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Periaquaductal grey, anterior
nTPM: 10.7
1947 Male, age 18, unknown 11.3
2502 Female, age 75, unknown 11.1
1795 Male, age 51, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 11.6
2850 Male, age 76, both hemispheres 12.4
1831 Male, age 72, unknown 11.9
1840 Male, age 53, unknown 11.3
2464 Female, age 72, unknown 10.9
Periaquaductal grey, lateral
nTPM: 11.5
2272 Male, age 74, both hemispheres 11.7
2140 Male, age 76, both hemispheres 11.6
2053 Male, age 18, unknown 11.3
Pretectal area
nTPM: 11.6
2007 Male, age 72, unknown 13.0
2825 Male, age 18, unknown 12.7
1815 Male, age 53, unknown 12.5
2407 Male, age 75, both hemispheres 12.3
1816 Male, age 51, unknown 11.7
2667 Female, age 75, unknown 11.7
1944 Female, age 72, unknown 11.6
1817 Female, age 42, unknown 11.5
2316 Male, age 76, right hemisphere 10.7
2224 Female, age 72, unknown 10.6
2273 Male, age 74, both hemispheres 9.8
Red nucleus
nTPM: 10.4
1954 Female, age 42, unknown 12.3
2584 Male, age 75, left hemisphere 11.9
1865 Male, age 51, unknown 11.6
2725 Female, age 75, unknown 11.0
1904 Male, age 53, unknown 10.6
2503 Female, age 72, unknown 10.4
2823 Male, age 76, right hemisphere 10.3
2785 Male, age 18, unknown 10.2
2769 Male, age 72, unknown 9.9
1821 Female, age 72, unknown 9.6
2588 Male, age 74, left hemisphere 9.2
2227 Male, age 72, unknown 8.3
Substantia nigra
nTPM: 11.1
2241 Male, age 72, unknown 13.9
1941 Male, age 53, unknown 13.1
1889 Female, age 72, unknown 12.9
2583 Male, age 75, right hemisphere 11.6
2590 Female, age 75, unknown 11.5
1851 Male, age 51, unknown 11.1
1916 Female, age 42, unknown 10.7
2665 Male, age 74, both hemispheres 10.2
2699 Male, age 18, unknown 9.1
2409 Female, age 72, unknown 6.6
Superior colliculus
nTPM: 11.2
2664 Male, age 75, both hemispheres 14.0
2261 Male, age 18, unknown 12.5
2087 Female, age 72, unknown 11.8
1839 Male, age 51, unknown 11.7
2587 Male, age 74, left hemisphere 11.6
1895 Male, age 76, right hemisphere 10.6
1796 Male, age 53, unknown 10.4
1995 Male, age 72, unknown 10.2
1913 Female, age 42, unknown 10.1
2668 Female, age 75, unknown 9.5
Ventral tegmental area
nTPM: 10.5
2218 Male, age 76, both hemispheres 11.2
2410 Female, age 72, unknown 10.9
2223 Female, age 72, unknown 10.7
1942 Male, age 51, unknown 10.3
2021 Male, age 53, unknown 10.3
1915 Female, age 42, unknown 9.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 139

Max nTPM: 14.8
Min nTPM: 5.0
Std nTPM: 1.1
Median nTPM: 6.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 14.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 9.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 8.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 8.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 8.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 8.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 8.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.0
FF:10158-103A5 76 years, female 23.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.4
Sample A Female 18.5
Sample B Female 17.4
Sample C Male 19.8
Sample D Male 20.6
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 25.9
Min nTPM: 19.3
Sample A Female 24.7
Sample B Female 19.3
Sample C Male 25.2
Sample D Male 25.9
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 19.4
Min nTPM: 17.5
Sample B Female 19.4
Sample C Male 18.9
Sample D Male 17.5
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 23.1
Min nTPM: 18.2
Sample A Female 21.3
Sample B Female 18.2
Sample C Male 23.1
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.4
Sample A Male 11.4
Sample B Male 13.0
Sample C Female 14.3
Sample D Female 13.9

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