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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
111.3
nTPM
FANTOM5:
48.7
Scaled Tags Per Million
Pig:
6.6
nTPM
Allen mouse:
0.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
111.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 26.8
2301
Female, age 85, both hemispheres
41.3
2188
Female, age 91, both hemispheres
27.3
1984
Male, age 76, both hemispheres
22.0
2090
Male, age 80, both hemispheres
16.5
Dorsal cochlear nucleus nTPM: 11.3
2187
Female, age 91, both hemispheres
16.8
2058
Male, age 76, both hemispheres
11.9
2378
Male, age 80, both hemispheres
11.8
2802
Male, age 74, right hemisphere
8.1
2370
Male, age 61, both hemispheres
8.0
Dorsal tegmental nucleus nTPM: 18.8
1936
Male, age 76, left hemisphere
24.1
2326
Male, age 74, both hemispheres
18.7
2083
Male, age 80, both hemispheres
16.4
2358
Male, age 61, both hemispheres
15.9
Dorsolateral tegmental area nTPM: 11.7
2360
Male, age 74, both hemispheres
17.3
2654
Male, age 80, both hemispheres
13.3
2141
Male, age 76, both hemispheres
10.9
2751
Female, age 85, both hemispheres
9.9
2337
Male, age 61, both hemispheres
7.2
Kolliker-Fuse nucleus nTPM: 33.4
2793
Female, age 91, left hemisphere
46.7
2315
Male, age 76, right hemisphere
42.8
2163
Male, age 80, both hemispheres
10.6
Lateral lemniscal nuclei nTPM: 94.6
2169
Male, age 76, both hemispheres
119.7
2036
Male, age 80, both hemispheres
118.3
2453
Male, age 74, right hemisphere
95.1
2746
Female, age 85, left hemisphere
88.6
2320
Female, age 91, left hemisphere
51.5
Lateral parabrachial nucleus nTPM: 50.0
2139
Female, age 85, right hemisphere
93.4
2013
Male, age 80, both hemispheres
54.5
2790
Male, age 61, both hemispheres
28.8
2792
Male, age 76, both hemispheres
23.2
Lateral vestibular nucleus nTPM: 12.7
2184
Male, age 76, both hemispheres
19.9
2311
Male, age 80, both hemispheres
5.5
Locus coeruleus nTPM: 17.2
2720
Male, age 74, both hemispheres
33.9
2317
Female, age 72, unknown
20.9
2014
Male, age 55, unknown
15.2
1980
Male, age 76, both hemispheres
14.9
2788
Male, age 74, unknown
13.8
2123
Female, age 91, both hemispheres
11.8
2162
Male, age 80, both hemispheres
9.9
Medial parabrachial nucleus nTPM: 23.7
2854
Male, age 80, both hemispheres
50.2
2786
Male, age 76, both hemispheres
21.9
2156
Male, age 61, both hemispheres
19.9
2463
Female, age 85, right hemisphere
14.7
2170
Female, age 91, both hemispheres
12.1
Medial periolivary nuclei nTPM: 87.6
2063
Male, age 76, both hemispheres
125.7
2171
Female, age 85, both hemispheres
125.6
2791
Male, age 74, right hemisphere
78.9
2081
Male, age 80, both hemispheres
60.1
2458
Female, age 91, both hemispheres
47.9
Motor facial nucleus nTPM: 87.4
2062
Male, age 76, both hemispheres
133.3
2327
Male, age 80, both hemispheres
130.0
2365
Male, age 74, right hemisphere
91.9
2697
Female, age 85, both hemispheres
79.4
2795
Female, age 91, both hemispheres
65.7
2126
Male, age 61, both hemispheres
24.3
Motor trigeminal nucleus nTPM: 47.8
2079
Male, age 80, both hemispheres
103.3
2560
Male, age 74, both hemispheres
77.4
2321
Female, age 91, both hemispheres
24.6
2309
Male, age 76, both hemispheres
17.8
2335
Male, age 61, both hemispheres
15.9
Nuclei of the trapezoid body nTPM: 111.3
2735
Female, age 85, both hemispheres
142.5
2159
Male, age 61, both hemispheres
128.4
1983
Male, age 76, both hemispheres
123.0
2166
Male, age 80, both hemispheres
97.0
2368
Female, age 91, both hemispheres
65.4
Nucleus raphe magnus nTPM: 107.2
2172
Female, age 85, both hemispheres
144.3
2160
Male, age 61, both hemispheres
144.1
2455
Male, age 74, both hemispheres
111.4
2328
Male, age 80, both hemispheres
104.3
2051
Male, age 76, both hemispheres
86.4
2459
Female, age 91, both hemispheres
52.7
Paramedian reticular nucleus nTPM: 17.6
2050
Female, age 85, both hemispheres
48.2
2313
Male, age 61, both hemispheres
9.6
2052
Male, age 76, both hemispheres
6.6
2057
Male, age 80, both hemispheres
6.0
Pedunculopontine tegmental nucleus nTPM: 17.7
2338
Male, age 61, both hemispheres
27.5
2334
Male, age 80, both hemispheres
15.4
1921
Female, age 85, both hemispheres
10.3
Pontine nuclei nTPM: 92.2
2787
Female, age 85, both hemispheres
153.6
1863
Male, age 55, unknown
126.9
1968
Male, age 76, left hemisphere
107.5
2727
Male, age 61, right hemisphere
99.4
2109
Female, age 72, unknown
93.9
2115
Male, age 80, left hemisphere
75.9
2454
Male, age 74, left hemisphere
45.4
2319
Female, age 91, both hemispheres
34.9
Pontine raphe nucleus nTPM: 41.8
2122
Female, age 85, midline
72.9
2853
Male, age 76, midline
10.6
Posteroventral cochlear nucleus nTPM: 9.8
2752
Female, age 85, both hemispheres
13.1
2371
Male, age 61, both hemispheres
11.6
2070
Male, age 76, both hemispheres
10.5
2135
Female, age 91, both hemispheres
7.7
2341
Male, age 80, both hemispheres
5.9
Principal sensory trigeminal nucleus nTPM: 77.4
2158
Male, age 61, both hemispheres
136.4
2008
Male, age 80, left hemisphere
110.9
2367
Female, age 91, left hemisphere
44.3
2324
Male, age 76, both hemispheres
18.1
Reticular pontine nucleus, caudal nTPM: 63.6
2332
Male, age 80, right hemisphere
116.4
2092
Male, age 76, both hemispheres
85.7
2457
Female, age 91, both hemispheres
41.7
2559
Male, age 74, both hemispheres
10.7
Reticular pontine nucleus, oral nTPM: 36.1
2012
Female, age 85, both hemispheres
64.4
2361
Male, age 74, both hemispheres
53.2
2366
Female, age 91, both hemispheres
40.2
2167
Male, age 76, both hemispheres
13.6
1939
Male, age 80, both hemispheres
9.3
Reticulotegmental nucleus nTPM: 35.5
2325
Male, age 76, both hemispheres
63.9
2452
Male, age 74, both hemispheres
31.4
2333
Male, age 80, both hemispheres
30.0
2322
Female, age 91, both hemispheres
16.6
Spinal trigeminal nucleus, oral nTPM: 10.8
2164
Male, age 80, both hemispheres
11.9
1978
Male, age 76, both hemispheres
11.0
2737
Female, age 85, both hemispheres
9.6
Subcoeruleus area nTPM: 44.2
2089
Male, age 76, left hemisphere
99.2
1958
Male, age 80, both hemispheres
60.1
2451
Male, age 74, both hemispheres
37.2
2323
Female, age 91, left hemisphere
16.3
2369
Female, age 85, left hemisphere
8.0
Superior olive nTPM: 88.1
1875
Female, age 85, both hemispheres
109.5
2329
Male, age 80, right hemisphere
101.0
2020
Male, age 76, both hemispheres
92.4
2364
Male, age 74, right hemisphere
71.6
2561
Female, age 91, both hemispheres
65.8
Ventral periolivary nuclei nTPM: 102.0
2130
Female, age 85, both hemispheres
131.6
2165
Male, age 80, both hemispheres
121.4
2023
Male, age 76, both hemispheres
82.7
2794
Female, age 91, left hemisphere
72.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 62.9
1959
Male, age 76, both hemispheres
101.7
2449
Male, age 74, both hemispheres
97.1
2161
Male, age 80, both hemispheres
89.0
2456
Female, age 91, both hemispheres
43.4
2840
Female, age 85, both hemispheres
35.6
2359
Male, age 61, both hemispheres
11.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.6
Pig sample
Sample description
nTPM
Pons nTPM: 6.6
Samples: 4
Max nTPM: 18.2
Min nTPM: 1.6
Sample A
Female
1.6
Sample B
Female
2.2
Sample C
Male
4.3
Sample D
Male
18.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
