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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LASP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
310.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
273.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
263.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
244.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
230.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
213.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
210.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
208.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
199.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
197.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
185.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
183.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
158.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
153.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
151.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
150.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
150.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
150.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
145.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
144.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
143.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
142.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
141.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
138.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
137.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
135.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
133.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
132.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
130.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
128.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
128.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
127.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
127.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
126.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
125.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
125.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
125.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
124.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
123.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
123.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
122.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
122.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
121.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
119.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
119.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
118.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
117.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
116.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
116.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
115.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
115.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
115.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
115.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
114.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
114.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
113.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
112.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
111.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
110.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
110.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
108.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
107.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
106.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
106.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
106.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
105.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
104.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
104.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
104.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
104.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
103.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
103.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
103.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
102.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
101.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
100.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
100.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
97.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
95.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
95.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
95.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
94.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
94.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
94.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
93.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
92.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
92.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
92.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
92.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
92.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
91.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
91.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
91.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
90.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
90.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
89.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
88.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
88.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
88.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
87.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
86.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
85.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
85.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
85.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
85.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
85.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
84.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
84.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
84.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
83.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
83.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
83.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
82.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
82.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
82.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
80.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
80.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
80.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
80.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
80.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
79.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
79.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
79.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
78.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
78.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
78.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
78.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
78.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
78.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
77.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
77.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
76.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
76.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
76.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
76.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
76.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
75.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
75.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
75.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
74.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
73.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
73.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
73.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
73.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
72.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
72.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
72.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
72.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
72.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
71.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
71.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
71.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
71.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
70.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
70.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
70.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
70.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
70.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
69.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
69.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
69.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
69.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
69.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
69.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
68.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
68.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
68.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
68.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
67.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
67.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
67.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
67.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
67.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
67.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
66.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
65.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
65.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
65.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
65.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
64.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
64.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
63.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
63.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
63.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
63.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
63.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
63.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
63.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
62.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
62.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
61.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
61.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
60.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
60.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
60.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
60.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
59.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
59.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
59.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
59.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
59.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
59.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
59.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
59.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
58.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
58.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
58.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
57.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
56.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
56.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
56.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
56.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
55.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
55.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
55.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
55.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
54.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
54.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
54.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
53.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
53.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
52.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
52.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
51.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
50.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
50.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
50.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
49.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
49.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
47.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
47.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
46.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
46.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
45.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
45.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
44.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
44.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
43.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
43.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
43.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
43.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
42.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
42.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
41.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
40.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
38.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
37.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
36.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
35.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
34.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
34.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
25.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LASP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
68.2
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
236.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
188.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
179.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
176.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
172.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
170.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
153.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
151.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
138.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
134.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
132.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
129.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
128.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
127.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
127.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
121.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
120.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
120.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
119.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
118.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
116.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
116.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
116.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
116.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
116.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
113.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
113.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
113.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
111.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
110.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
109.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
109.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
107.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
106.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
105.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
105.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
105.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
105.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
97.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
96.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
96.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
95.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
94.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
93.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
92.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
91.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
91.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
90.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
89.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
88.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
88.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
88.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
88.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
86.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
86.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
86.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
85.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
85.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
85.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
84.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
83.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
83.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
81.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
81.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
81.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
80.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
77.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
77.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
76.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
75.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
75.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
74.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
74.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
74.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
74.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
74.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
73.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
73.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
73.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
71.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
70.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
70.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
70.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
69.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
69.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
67.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
67.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
67.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
66.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
66.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
66.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
65.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
64.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
64.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
64.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
63.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
63.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
63.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
62.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
61.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
61.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
61.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
61.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
61.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
60.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
60.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
60.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
60.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
60.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
60.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
60.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
60.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
59.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
58.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
58.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
57.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
57.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
57.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
57.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
57.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
56.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
56.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
56.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
56.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
55.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
55.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
55.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
55.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
55.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
55.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
54.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
53.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
53.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
53.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
53.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
52.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
52.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
52.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
51.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
50.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
49.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
49.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
47.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
47.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
44.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
44.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
43.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
43.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
43.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
42.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
41.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
39.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
36.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
34.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
363
Tumor
1.0
921
Tumor
0.9
477
Tumor
0.9
951
Tumor
0.9
1027
Tumor
0.8
471
Tumor
0.8
1025
Tumor
0.8
1045
Tumor
0.8
617
Tumor
0.8
553
Tumor
0.7
1021
Tumor
0.7
925
Tumor
0.7
817
Tumor
0.7
957
Tumor
0.7
527
Tumor
0.7
1031
Tumor
0.6
983
Tumor
0.6
425
Tumor
0.6
977
Tumor
0.6
975
Tumor
0.5
525
Tumor
0.5
635
Tumor
0.5
498
Normal
0.5
952
Normal
0.5
695
Tumor
0.5
777
Tumor
0.4
513
Tumor
0.4
571
Tumor
0.4
112
Tumor
0.4
923
Tumor
0.4
492
Normal
0.4
911
Tumor
0.4
478
Normal
0.4
823
Tumor
0.4
913
Tumor
0.4
538
Normal
0.4
493
Tumor
0.4
881
Tumor
0.4
515
Tumor
0.4
967
Tumor
0.4
852
Normal
0.4
916
Normal
0.4
958
Normal
0.4
221
Tumor
0.4
545
Tumor
0.4
535
Tumor
0.4
857
Tumor
0.4
1043
Tumor
0.4
327
Tumor
0.3
367
Tumor
0.3
1028
Normal
0.3
918
Normal
0.3
341
Tumor
0.3
727
Tumor
0.3
465
Tumor
0.3
223
Tumor
0.3
355
Tumor
0.3
536
Normal
0.3
984
Normal
0.3
497
Tumor
0.3
824
Normal
0.3
211
Tumor
0.3
516
Normal
0.3
423
Tumor
0.3
861
Tumor
0.3
533
Tumor
0.3
982
Normal
0.2
434
Normal
0.2
724
Normal
0.2
277
Tumor
0.2
554
Normal
0.2
421
Tumor
0.2
271
Tumor
0.2
864
Normal
0.2
966
Normal
0.2
874
Normal
0.2
955
Tumor
0.2
863
Tumor
0.2
641
Tumor
0.2
868
Normal
0.2
878
Normal
0.2
563
Tumor
0.2
257
Tumor
0.2
483
Tumor
0.2
1042
Normal
0.2
865
Tumor
0.2
978
Normal
0.2
937
Tumor
0.2
443
Tumor
0.2
922
Normal
0.2
415
Tumor
0.2
518
Normal
0.2
494
Normal
0.2
858
Normal
0.2
697
Tumor
0.2
212
Normal
0.2
433
Tumor
0.2
924
Normal
0.2
954
Normal
0.2
1044
Normal
0.2
746
Normal
0.2
738
Normal
0.2
537
Tumor
0.2
968
Normal
0.2
474
Normal
0.2
448
Normal
0.2
917
Tumor
0.1
455
Tumor
0.1
744
Normal
0.1
737
Tumor
0.1
715
Tumor
0.1
882
Normal
0.1
364
Normal
0.1
778
Normal
0.1
546
Normal
0.1
472
Normal
0.1
447
Tumor
0.1
1032
Normal
0.1
866
Normal
0.1
435
Tumor
0.1
1013
Tumor
0.1
943
Tumor
0.1
484
Normal
0.1
1041
Tumor
0.1
944
Normal
0.1
427
Tumor
0.1
976
Normal
0.1
524
Normal
0.1
884
Normal
0.1
528
Normal
0.1
926
Normal
0.1
912
Normal
0.1
463
Tumor
0.1
698
Normal
0.1
227
Tumor
0.1
728
Normal
0.1
185
Tumor
0.1
286
Normal
0.1
123
Tumor
0.1
135
Tumor
0.1
696
Normal
0.1
285
Tumor
0.1
284
Normal
0.1
914
Normal
0.1
714
Normal
0.1
517
Tumor
0.1
818
Normal
0.1
1022
Normal
0.1
574
Normal
0.1
816
Normal
0.1
462
Normal
0.1
431
Tumor
0.1
224
Normal
0.1
716
Normal
0.1
786
Normal
0.1
741
Tumor
0.1
362
Normal
0.1
1026
Normal
0.1
956
Normal
0.0
963
Tumor
0.0
938
Normal
0.0
647
Tumor
0.0
395
Tumor
0.0
461
Tumor
0.0
671
Tumor
0.0
686
Normal
0.0
883
Tumor
0.0
366
Normal
0.0
416
Normal
0.0
672
Normal
0.0
228
Normal
0.0
721
Tumor
0.0
481
Tumor
0.0
557
Tumor
0.0
488
Normal
0.0
311
Tumor
0.0
642
Normal
0.0
785
Tumor
0.0
411
Tumor
0.0
444
Normal
0.0
192
Normal
0.0
756
Normal
0.0
664
Normal
0.0
663
Tumor
0.0
451
Tumor
0.0
964
Normal
0.0
568
Normal
0.0
213
Tumor
0.0
514
Normal
0.0
1016
Normal
0.0
723
Tumor
0.0
534
Normal
0.0
412
Normal
0.0
344
Normal
0.0
467
Tumor
0.0
214
Normal
0.0
558
Normal
0.0
564
Normal
0.0
267
Tumor
0.0
473
Tumor
0.0
456
Normal
0.0
436
Normal
0.0
452
Normal
0.0
572
Normal
0.0
142
Normal
0.0
124
Normal
0.0
365
Tumor
0.0
424
Normal
0.0
867
Tumor
0.0
482
Normal
-0.1
713
Tumor
-0.1
268
Normal
-0.1
1014
Normal
-0.1
354
Normal
-0.1
523
Tumor
-0.1
131
Tumor
-0.1
432
Normal
-0.1
368
Normal
-0.1
662
Normal
-0.1
386
Normal
-0.1
526
Normal
-0.1
171
Tumor
-0.1
343
Tumor
-0.1
414
Normal
-0.1
126
Normal
-0.1
1046
Normal
-0.1
745
Tumor
-0.1
147
Tumor
-0.1
393
Tumor
-0.1
138
Normal
-0.1
742
Normal
-0.1
648
Normal
-0.1
466
Normal
-0.1
385
Tumor
-0.1
396
Normal
-0.1
862
Normal
-0.1
298
Normal
-0.1
446
Normal
-0.1
755
Tumor
-0.1
297
Tumor
-0.1
567
Tumor
-0.1
258
Normal
-0.1
953
Tumor
-0.1
428
Normal
-0.1
573
Tumor
-0.1
312
Normal
-0.1
328
Normal
-0.1
628
Normal
-0.1
468
Normal
-0.1
388
Normal
-0.1
356
Normal
-0.1
136
Normal
-0.1
262
Normal
-0.1
666
Normal
-0.1
814
Normal
-0.1
426
Normal
-0.2
813
Tumor
-0.2
965
Tumor
-0.2
162
Normal
-0.2
188
Normal
-0.2
141
Tumor
-0.2
1015
Tumor
-0.2
616
Normal
-0.2
413
Tumor
-0.2
361
Tumor
-0.2
422
Normal
-0.2
915
Tumor
-0.2
375
Tumor
-0.2
464
Normal
-0.2
383
Tumor
-0.2
278
Normal
-0.2
851
Tumor
-0.2
722
Normal
-0.2
376
Normal
-0.2
146
Normal
-0.2
222
Normal
-0.2
195
Tumor
-0.2
387
Tumor
-0.2
815
Tumor
-0.2
114
Normal
-0.2
283
Tumor
-0.2
342
Normal
-0.2
636
Normal
-0.2
272
Normal
-0.2
618
Normal
-0.2
172
Normal
-0.2
384
Normal
-0.2
392
Normal
-0.2
352
Normal
-0.2
232
Normal
-0.2
873
Tumor
-0.2
661
Tumor
-0.2
627
Tumor
-0.2
743
Tumor
-0.3
445
Tumor
-0.3
137
Tumor
-0.3
127
Tumor
-0.3
161
Tumor
-0.3
358
Normal
-0.3
186
Normal
-0.3
394
Normal
-0.3
491
Tumor
-0.3
111
Normal
-0.3
261
Tumor
-0.3
145
Tumor
-0.3
196
Normal
-0.3
113
Tumor
-0.3
231
Tumor
-0.3
128
Normal
-0.3
351
Tumor
-0.3
487
Tumor
-0.3
877
Tumor
-0.3
218
Normal
-0.3
191
Tumor
-0.3
187
Tumor
-0.3
981
Tumor
-0.3
132
Normal
-0.3
148
Normal
-0.3
217
Tumor
-0.4
353
Tumor
-0.4
125
Tumor
-0.4
391
Tumor
-0.4
357
Tumor
-0.4
685
Tumor
-0.4
615
Tumor
-0.4
314
Normal
-0.4
665
Tumor
-0.4
331
Tumor
-0.5
332
Normal
-0.5
313
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
