MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:20.7 nTPM
GTEx:9.3 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:14.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.3
2586 Male, age 75, left hemisphere 30.3
1830 Male, age 51, unknown 23.5
1870 Female, age 42, unknown 21.8
1833 Male, age 53, unknown 21.1
2219 Male, age 76, both hemispheres 20.0
2666 Male, age 74, left hemisphere 18.8
2828 Female, age 72, unknown 17.8
2411 Female, age 72, unknown 17.5
1827 Male, age 72, unknown 16.6
2019 Male, age 18, unknown 15.7
Dorsal raphe nucleus
nTPM: 16.9
2047 Male, age 72, unknown 19.2
2750 Male, age 76, both hemispheres 17.5
2016 Female, age 72, unknown 17.3
1828 Male, age 53, unknown 17.2
2298 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 19.5
1890 Male, age 53, unknown 21.8
2849 Male, age 72, unknown 20.6
1848 Female, age 42, unknown 19.6
2097 Female, age 72, unknown 15.9
Median raphe nucleus
nTPM: 15.7
2220 Male, age 76, midline 15.7
Periaquaductal grey, anterior
nTPM: 16.6
1947 Male, age 18, unknown 17.4
2502 Female, age 75, unknown 17.4
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 14.9
1840 Male, age 53, unknown 16.9
2464 Female, age 72, unknown 15.2
1831 Male, age 72, unknown 14.7
2850 Male, age 76, both hemispheres 12.6
Periaquaductal grey, lateral
nTPM: 14.3
2272 Male, age 74, both hemispheres 15.4
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 12.7
Pretectal area
nTPM: 15.6
2407 Male, age 75, both hemispheres 23.5
2825 Male, age 18, unknown 18.5
2667 Female, age 75, unknown 15.8
1815 Male, age 53, unknown 15.5
2316 Male, age 76, right hemisphere 15.4
2224 Female, age 72, unknown 15.0
2007 Male, age 72, unknown 14.6
1944 Female, age 72, unknown 14.2
2273 Male, age 74, both hemispheres 14.1
1817 Female, age 42, unknown 12.4
1816 Male, age 51, unknown 12.3
Red nucleus
nTPM: 19.8
2584 Male, age 75, left hemisphere 30.0
1865 Male, age 51, unknown 23.0
2588 Male, age 74, left hemisphere 21.2
2227 Male, age 72, unknown 21.0
2769 Male, age 72, unknown 20.3
1904 Male, age 53, unknown 19.3
2785 Male, age 18, unknown 19.2
2823 Male, age 76, right hemisphere 18.4
2503 Female, age 72, unknown 18.0
2725 Female, age 75, unknown 17.1
1821 Female, age 72, unknown 16.6
1954 Female, age 42, unknown 13.8
Substantia nigra
nTPM: 20.7
2409 Female, age 72, unknown 31.9
2699 Male, age 18, unknown 24.8
2583 Male, age 75, right hemisphere 22.1
1851 Male, age 51, unknown 21.8
2590 Female, age 75, unknown 19.8
2665 Male, age 74, both hemispheres 19.0
2241 Male, age 72, unknown 17.5
1916 Female, age 42, unknown 17.1
1941 Male, age 53, unknown 17.1
1889 Female, age 72, unknown 15.8
Superior colliculus
nTPM: 17.6
2664 Male, age 75, both hemispheres 24.2
1895 Male, age 76, right hemisphere 20.1
1995 Male, age 72, unknown 18.9
2668 Female, age 75, unknown 18.8
1913 Female, age 42, unknown 17.2
1839 Male, age 51, unknown 16.4
1796 Male, age 53, unknown 16.2
2587 Male, age 74, left hemisphere 16.1
2087 Female, age 72, unknown 14.4
2261 Male, age 18, unknown 13.8
Ventral tegmental area
nTPM: 18.9
1915 Female, age 42, unknown 20.4
2223 Female, age 72, unknown 20.1
2218 Male, age 76, both hemispheres 18.7
2410 Female, age 72, unknown 18.5
1942 Male, age 51, unknown 18.3
2021 Male, age 53, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 15.4
Min nTPM: 4.9
Std nTPM: 2.1
Median nTPM: 8.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 15.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 14.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 13.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 13.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 13.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 13.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 12.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 12.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 12.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.0
Samples: 4

Max nTPM: 9.5
Min nTPM: 5.9
Sample A Female 9.5
Sample B Female 7.5
Sample C Male 9.1
Sample D Male 5.9
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 9.1
Sample C Male 6.8
Sample D Male 10.5
Periaqueductal gray
nTPM: 9.8
Samples: 3

Max nTPM: 10.8
Min nTPM: 7.8
Sample B Female 10.8
Sample C Male 10.7
Sample D Male 7.8
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 10.2
Min nTPM: 6.2
Sample A Female 10.2
Sample B Female 7.4
Sample C Male 6.2
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 13.5
Sample C Female 14.8
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70928294 Antisense, RP_050725_02_C09, Mouse strain C57BL/6J (56 days, male) 0.2
100146060 Antisense, RP_110421_02_F12, Mouse strain C57BL/6J (56 days, male) 0.1

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