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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD99 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
186.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
772.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
646.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
554.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
524.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
474.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
455.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
435.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
410.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
405.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
396.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
394.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
388.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
382.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
380.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
372.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
371.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
364.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
364.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
361.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
359.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
348.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
348.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
342.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
340.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
339.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
335.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
326.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
323.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
323.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
315.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
315.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
314.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
312.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
310.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
307.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
305.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
297.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
292.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
288.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
284.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
283.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
283.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
282.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
282.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
281.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
281.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
279.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
278.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
278.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
275.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
275.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
273.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
271.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
270.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
269.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
268.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
268.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
266.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
264.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
261.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
259.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
258.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
257.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
257.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
257.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
256.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
255.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
254.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
252.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
252.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
251.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
251.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
250.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
247.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
245.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
245.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
244.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
243.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
243.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
242.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
242.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
241.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
241.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
240.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
238.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
236.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
236.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
233.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
233.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
232.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
230.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
230.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
229.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
228.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
228.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
227.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
227.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
226.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
224.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
224.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
223.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
222.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
221.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
217.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
217.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
214.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
213.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
212.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
210.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
210.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
207.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
206.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
204.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
204.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
202.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
200.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
200.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
197.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
197.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
197.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
195.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
195.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
194.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
194.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
193.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
191.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
191.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
191.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
190.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
190.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
190.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
190.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
189.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
189.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
188.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
188.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
186.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
186.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
185.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
185.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
184.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
184.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
184.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
183.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
183.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
183.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
182.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
182.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
181.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
180.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
180.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
179.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
179.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
178.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
177.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
177.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
176.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
176.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
176.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
175.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
175.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
175.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
175.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
175.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
174.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
174.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
174.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
173.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
172.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
172.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
171.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
171.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
170.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
170.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
169.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
169.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
168.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
168.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
167.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
167.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
167.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
166.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
165.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
165.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
163.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
163.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
162.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
162.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
161.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
160.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
160.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
159.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
159.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
159.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
158.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
158.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
158.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
157.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
157.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
156.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
156.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
156.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
155.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
155.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
155.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
154.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
153.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
153.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
153.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
153.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
152.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
152.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
152.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
151.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
150.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
150.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
148.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
148.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
148.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
147.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
147.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
147.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
147.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
146.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
146.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
145.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
145.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
145.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
145.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
145.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
145.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
144.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
144.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
144.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
144.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
143.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
142.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
142.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
141.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
139.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
139.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
139.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
138.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
138.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
137.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
137.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
137.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
136.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
136.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
133.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
133.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
133.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
133.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
132.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
132.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
132.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
132.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
131.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
131.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
131.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
130.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
130.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
129.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
128.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
128.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
128.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
128.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
127.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
127.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
126.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
126.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
126.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
125.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
125.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
124.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
123.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
121.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
121.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
121.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
121.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
120.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
119.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
118.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
117.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
117.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
116.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
115.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
115.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
114.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
113.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
113.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
112.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
112.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
111.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
111.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
111.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
111.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
111.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
111.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
110.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
110.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
110.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
109.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
109.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
109.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
108.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
105.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
105.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
105.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
104.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
104.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
104.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
104.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
103.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
102.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
102.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
101.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
101.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
100.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
100.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
98.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
97.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
97.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
96.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
96.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
96.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
95.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
95.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
94.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
93.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
91.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
90.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
87.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
86.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
86.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
84.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
82.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
82.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
79.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
79.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
77.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
73.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
72.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
71.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
68.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
68.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
66.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
66.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
63.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
61.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
57.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
57.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
56.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
52.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
42.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.3
131
Tumor
1.1
387
Tumor
1.0
536
Normal
1.0
863
Tumor
0.9
517
Tumor
0.9
958
Normal
0.8
742
Normal
0.8
937
Tumor
0.7
1032
Normal
0.7
963
Tumor
0.7
954
Normal
0.7
271
Tumor
0.7
351
Tumor
0.7
922
Normal
0.7
415
Tumor
0.7
715
Tumor
0.7
516
Normal
0.7
484
Normal
0.7
412
Normal
0.6
647
Tumor
0.6
332
Normal
0.6
526
Normal
0.6
352
Normal
0.6
716
Normal
0.6
546
Normal
0.6
944
Normal
0.6
478
Normal
0.6
362
Normal
0.6
224
Normal
0.6
368
Normal
0.6
554
Normal
0.5
874
Normal
0.5
112
Tumor
0.5
384
Normal
0.5
358
Normal
0.5
984
Normal
0.5
648
Normal
0.5
463
Tumor
0.5
538
Normal
0.5
965
Tumor
0.5
666
Normal
0.5
558
Normal
0.5
916
Normal
0.5
524
Normal
0.5
574
Normal
0.5
696
Normal
0.5
196
Normal
0.5
127
Tumor
0.5
534
Normal
0.4
344
Normal
0.4
864
Normal
0.4
451
Tumor
0.4
1042
Normal
0.4
471
Tumor
0.4
568
Normal
0.4
1031
Tumor
0.4
376
Normal
0.4
1041
Tumor
0.4
222
Normal
0.4
314
Normal
0.4
964
Normal
0.4
785
Tumor
0.4
777
Tumor
0.4
452
Normal
0.4
468
Normal
0.4
268
Normal
0.4
113
Tumor
0.4
926
Normal
0.4
564
Normal
0.4
422
Normal
0.4
921
Tumor
0.4
261
Tumor
0.4
982
Normal
0.4
567
Tumor
0.4
1046
Normal
0.3
363
Tumor
0.3
227
Tumor
0.3
444
Normal
0.3
514
Normal
0.3
278
Normal
0.3
881
Tumor
0.3
882
Normal
0.3
968
Normal
0.3
354
Normal
0.3
923
Tumor
0.3
868
Normal
0.3
824
Normal
0.3
978
Normal
0.3
528
Normal
0.3
366
Normal
0.3
192
Normal
0.3
938
Normal
0.3
852
Normal
0.3
867
Tumor
0.3
862
Normal
0.3
966
Normal
0.3
435
Tumor
0.3
365
Tumor
0.3
481
Tumor
0.3
394
Normal
0.3
146
Normal
0.3
557
Tumor
0.3
428
Normal
0.3
396
Normal
0.3
443
Tumor
0.3
137
Tumor
0.3
388
Normal
0.3
952
Normal
0.3
918
Normal
0.3
124
Normal
0.3
221
Tumor
0.3
917
Tumor
0.2
636
Normal
0.2
474
Normal
0.2
884
Normal
0.2
392
Normal
0.2
816
Normal
0.2
628
Normal
0.2
861
Tumor
0.2
488
Normal
0.2
416
Normal
0.2
228
Normal
0.2
518
Normal
0.2
214
Normal
0.2
142
Normal
0.2
714
Normal
0.2
218
Normal
0.2
778
Normal
0.2
912
Normal
0.2
1044
Normal
0.2
741
Tumor
0.2
132
Normal
0.2
421
Tumor
0.2
818
Normal
0.2
943
Tumor
0.2
312
Normal
0.2
563
Tumor
0.2
642
Normal
0.2
686
Normal
0.1
128
Normal
0.1
456
Normal
0.1
185
Tumor
0.1
878
Normal
0.1
723
Tumor
0.1
1028
Normal
0.1
1043
Tumor
0.1
424
Normal
0.1
976
Normal
0.1
272
Normal
0.1
258
Normal
0.1
553
Tumor
0.1
913
Tumor
0.1
114
Normal
0.1
977
Tumor
0.1
448
Normal
0.1
498
Normal
0.1
232
Normal
0.1
698
Normal
0.1
472
Normal
0.1
494
Normal
0.1
737
Tumor
0.1
746
Normal
0.1
138
Normal
0.1
386
Normal
0.1
187
Tumor
0.1
188
Normal
0.1
814
Normal
0.1
664
Normal
0.1
342
Normal
0.1
353
Tumor
0.1
483
Tumor
0.1
455
Tumor
0.1
983
Tumor
0.1
883
Tumor
0.1
525
Tumor
0.1
426
Normal
0.1
383
Tumor
0.0
361
Tumor
0.0
925
Tumor
0.0
111
Normal
0.0
186
Normal
0.0
467
Tumor
0.0
425
Tumor
0.0
195
Tumor
0.0
311
Tumor
0.0
572
Normal
0.0
721
Tumor
0.0
327
Tumor
0.0
873
Tumor
0.0
464
Normal
0.0
262
Normal
0.0
328
Normal
0.0
436
Normal
0.0
477
Tumor
0.0
914
Normal
0.0
953
Tumor
0.0
695
Tumor
0.0
267
Tumor
0.0
738
Normal
0.0
813
Tumor
0.0
212
Normal
0.0
744
Normal
0.0
641
Tumor
0.0
523
Tumor
-0.1
956
Normal
-0.1
148
Normal
-0.1
573
Tumor
-0.1
411
Tumor
-0.1
434
Normal
-0.1
367
Tumor
-0.1
445
Tumor
-0.1
722
Normal
-0.1
492
Normal
-0.1
217
Tumor
-0.1
283
Tumor
-0.1
911
Tumor
-0.1
414
Normal
-0.1
172
Normal
-0.1
662
Normal
-0.1
364
Normal
-0.1
482
Normal
-0.1
924
Normal
-0.1
1022
Normal
-0.1
545
Tumor
-0.1
284
Normal
-0.1
432
Normal
-0.1
1045
Tumor
-0.1
433
Tumor
-0.1
285
Tumor
-0.1
513
Tumor
-0.1
665
Tumor
-0.1
213
Tumor
-0.1
866
Normal
-0.1
423
Tumor
-0.1
385
Tumor
-0.1
527
Tumor
-0.1
355
Tumor
-0.2
823
Tumor
-0.2
487
Tumor
-0.2
728
Normal
-0.2
171
Tumor
-0.2
756
Normal
-0.2
298
Normal
-0.2
786
Normal
-0.2
395
Tumor
-0.2
1016
Normal
-0.2
393
Tumor
-0.2
724
Normal
-0.2
515
Tumor
-0.2
627
Tumor
-0.2
277
Tumor
-0.2
1014
Normal
-0.2
147
Tumor
-0.2
951
Tumor
-0.2
858
Normal
-0.2
533
Tumor
-0.2
466
Normal
-0.2
535
Tumor
-0.3
162
Normal
-0.3
817
Tumor
-0.3
1026
Normal
-0.3
617
Tumor
-0.3
223
Tumor
-0.3
851
Tumor
-0.3
431
Tumor
-0.3
713
Tumor
-0.3
191
Tumor
-0.3
618
Normal
-0.3
447
Tumor
-0.3
343
Tumor
-0.3
537
Tumor
-0.3
427
Tumor
-0.3
356
Normal
-0.3
145
Tumor
-0.3
685
Tumor
-0.3
975
Tumor
-0.4
446
Normal
-0.4
413
Tumor
-0.4
391
Tumor
-0.4
616
Normal
-0.4
462
Normal
-0.4
1021
Tumor
-0.4
286
Normal
-0.4
697
Tumor
-0.4
126
Normal
-0.4
915
Tumor
-0.4
877
Tumor
-0.4
231
Tumor
-0.4
957
Tumor
-0.4
141
Tumor
-0.5
357
Tumor
-0.5
461
Tumor
-0.5
727
Tumor
-0.5
257
Tumor
-0.5
981
Tumor
-0.5
161
Tumor
-0.5
375
Tumor
-0.5
745
Tumor
-0.5
341
Tumor
-0.5
857
Tumor
-0.6
123
Tumor
-0.6
331
Tumor
-0.6
465
Tumor
-0.6
125
Tumor
-0.6
493
Tumor
-0.6
313
Tumor
-0.6
297
Tumor
-0.7
955
Tumor
-0.7
491
Tumor
-0.7
1015
Tumor
-0.7
755
Tumor
-0.7
211
Tumor
-0.7
661
Tumor
-0.8
635
Tumor
-0.8
967
Tumor
-0.9
865
Tumor
-0.9
136
Normal
-0.9
743
Tumor
-0.9
615
Tumor
-1.0
135
Tumor
-1.0
815
Tumor
-1.0
672
Normal
-1.0
571
Tumor
-1.0
671
Tumor
-1.0
497
Tumor
-1.1
1025
Tumor
-1.2
1027
Tumor
-1.3
1013
Tumor
-1.5
663
Tumor
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.