HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:127.3 nTPM
HPA Brain:73.8 nTPM
GTEx:127.3 nTPM
FANTOM5:20.0 Scaled Tags Per Million
Pig:28.3 nTPM
Mouse:44.6 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028185Antibody HPA062105Antibody CAB004205
Glial cells MediumNot detectedMedium
Neuronal cells MediumLowMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 73.8
Sample id Sample description nTPM
Hippocampus
nTPM: 72.2
1898 Male, age 80, left hemisphere 81.1
2529 Female, age 94, left hemisphere 74.9
2148 Female, age 91, left hemisphere 72.2
1855 Male, age 76, left hemisphere 70.7
1911 Female, age 85, right hemisphere 70.0
2621 Female, age 67, right hemisphere 64.6
Dentate gyrus
nTPM: 73.3
2530 Female, age 94, left hemisphere 83.6
1927 Female, age 91, both hemispheres 81.0
2528 Male, age 74, both hemispheres 74.6
2010 Male, age 76, both hemispheres 68.6
2246 Female, age 85, both hemispheres 67.3
2531 Female, age 67, both hemispheres 64.9
Entorhinal gyrus
nTPM: 67.2
1938 Female, age 85, left hemisphere 73.3
2764 Male, age 80, right hemisphere 71.8
2117 Female, age 91, right hemisphere 71.4
1787 Male, age 76, left hemisphere 69.4
2613 Female, age 94, left hemisphere 60.1
2686 Male, age 75, right hemisphere 57.1
Hippocampus, CA1
nTPM: 73.8
2749 Male, age 80, left hemisphere 96.4
2527 Male, age 74, both hemispheres 71.6
1873 Female, age 85, both hemispheres 67.3
2045 Male, age 76, both hemispheres 67.2
2082 Female, age 91, right hemisphere 66.7
Hippocampus, CA2
nTPM: 70.9
1963 Male, age 80, left hemisphere 91.6
1892 Male, age 76, both hemispheres 71.8
2437 Female, age 94, left hemisphere 70.0
2113 Female, age 91, right hemisphere 64.3
2249 Male, age 74, both hemispheres 64.0
1940 Female, age 85, left hemisphere 63.9
Hippocampus, CA3
nTPM: 71.2
2137 Male, age 80, left hemisphere 83.0
2861 Female, age 67, both hemispheres 78.2
1867 Male, age 76, both hemispheres 71.2
2436 Male, age 74, both hemispheres 67.6
2620 Female, age 94, left hemisphere 65.5
1891 Female, age 85, both hemispheres 61.8
Parahippocampal cortex
nTPM: 61.8
2245 Female, age 91, both hemispheres 73.1
1933 Female, age 85, both hemispheres 69.1
2692 Male, age 74, both hemispheres 64.0
1990 Female, age 91, right hemisphere 61.7
2250 Female, age 67, right hemisphere 61.6
2622 Female, age 67, right hemisphere 61.6
2532 Female, age 72, left hemisphere 60.4
1850 Male, age 80, both hemispheres 60.0
2018 Male, age 76, both hemispheres 54.5
2693 Female, age 94, both hemispheres 51.8
Perirhinal gyrus
nTPM: 66.1
1847 Female, age 91, left hemisphere 71.8
2521 Female, age 94, right hemisphere 70.1
1794 Male, age 80, right hemisphere 67.3
1841 Female, age 85, right hemisphere 63.0
2848 Male, age 76, right hemisphere 58.4
Subiculum
nTPM: 63.6
2729 Female, age 91, right hemisphere 69.4
1901 Male, age 80, both hemispheres 69.0
2042 Male, age 76, both hemispheres 66.1
1977 Female, age 85, both hemispheres 65.8
2619 Male, age 74, both hemispheres 64.7
2438 Female, age 94, left hemisphere 46.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 127.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 127.3
Samples: 255

Max nTPM: 288.6
Min nTPM: 37.4
Std nTPM: 38.7
Median nTPM: 121.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 288.6
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 260.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 249.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 237.8
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 220.8
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 215.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 214.1
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 214.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 211.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 204.7
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 201.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.0
FF:10153-102I9 76 years, female 21.3
FF:10169-103B7 60 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 28.3
Pig sample Sample description nTPM
Subiculum
nTPM: 27.1
Samples: 4

Max nTPM: 33.2
Min nTPM: 23.4
Sample A Female 33.2
Sample B Female 26.6
Sample C Male 25.2
Sample D Male 23.4
Dorsal hippocampus
nTPM: 28.3
Samples: 4

Max nTPM: 37.0
Min nTPM: 24.0
Sample A Female 37.0
Sample B Female 27.1
Sample C Male 24.9
Sample D Male 24.0
Entorhinal cortex
nTPM: 27.7
Samples: 4

Max nTPM: 35.3
Min nTPM: 23.5
Sample A Female 23.8
Sample B Female 28.3
Sample C Male 35.3
Sample D Male 23.5
Ventral hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 34.6
Min nTPM: 24.2
Sample A Female 27.3
Sample B Female 24.2
Sample C Male 34.6
Sample D Male 26.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 44.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.7
Samples: 4

Max nTPM: 43.8
Min nTPM: 37.9
Sample A Male 38.5
Sample B Male 42.4
Sample C Female 43.8
Sample D Female 37.9
Hippocampal formation
nTPM: 44.6
Samples: 4

Max nTPM: 56.3
Min nTPM: 36.7
Sample A Male 36.7
Sample B Male 40.5
Sample C Female 44.7
Sample D Female 56.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.0
74881790 Antisense, RP_060315_04_D03, Mouse strain C57BL/6J (56 days, male) 2.7
69528052 Antisense, RP_050421_03_A05, Mouse strain C57BL/6J (56 days, male) 1.2

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