MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:40.2 nTPM
GTEx:17.9 nTPM
FANTOM5:164.3 Scaled Tags Per Million
Pig:53.4 nTPM
Mouse:24.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
1870 Female, age 42, unknown 44.1
2411 Female, age 72, unknown 42.6
2019 Male, age 18, unknown 41.0
1833 Male, age 53, unknown 38.3
1830 Male, age 51, unknown 38.1
1827 Male, age 72, unknown 27.6
2828 Female, age 72, unknown 26.4
2586 Male, age 75, left hemisphere 25.4
2666 Male, age 74, left hemisphere 25.0
2219 Male, age 76, both hemispheres 19.3
Dorsal raphe nucleus
nTPM: 26.2
2750 Male, age 76, both hemispheres 35.2
2016 Female, age 72, unknown 27.4
1828 Male, age 53, unknown 26.1
2298 Female, age 72, unknown 22.9
2047 Male, age 72, unknown 19.5
Inferior colliculus
nTPM: 24.5
2097 Female, age 72, unknown 26.2
1848 Female, age 42, unknown 25.4
1890 Male, age 53, unknown 24.3
2849 Male, age 72, unknown 22.0
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Periaquaductal grey, anterior
nTPM: 27.0
2502 Female, age 75, unknown 31.7
1947 Male, age 18, unknown 27.9
1795 Male, age 51, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 25.5
2850 Male, age 76, both hemispheres 32.8
2464 Female, age 72, unknown 28.0
1831 Male, age 72, unknown 23.2
1840 Male, age 53, unknown 17.8
Periaquaductal grey, lateral
nTPM: 28.6
2140 Male, age 76, both hemispheres 30.1
2272 Male, age 74, both hemispheres 28.5
2053 Male, age 18, unknown 27.3
Pretectal area
nTPM: 29.0
1815 Male, age 53, unknown 35.1
1817 Female, age 42, unknown 32.0
2273 Male, age 74, both hemispheres 32.0
2007 Male, age 72, unknown 31.2
2667 Female, age 75, unknown 31.1
2316 Male, age 76, right hemisphere 29.8
1816 Male, age 51, unknown 27.4
1944 Female, age 72, unknown 26.5
2825 Male, age 18, unknown 24.8
2224 Female, age 72, unknown 24.7
2407 Male, age 75, both hemispheres 24.0
Red nucleus
nTPM: 40.2
1904 Male, age 53, unknown 49.8
1821 Female, age 72, unknown 49.1
1865 Male, age 51, unknown 48.5
1954 Female, age 42, unknown 46.2
2227 Male, age 72, unknown 43.5
2769 Male, age 72, unknown 42.9
2785 Male, age 18, unknown 40.1
2503 Female, age 72, unknown 39.4
2823 Male, age 76, right hemisphere 34.1
2588 Male, age 74, left hemisphere 32.3
2725 Female, age 75, unknown 29.5
2584 Male, age 75, left hemisphere 27.5
Substantia nigra
nTPM: 26.3
2409 Female, age 72, unknown 34.9
1889 Female, age 72, unknown 33.0
2583 Male, age 75, right hemisphere 31.5
2241 Male, age 72, unknown 28.7
1851 Male, age 51, unknown 27.8
1941 Male, age 53, unknown 23.9
2590 Female, age 75, unknown 23.8
1916 Female, age 42, unknown 22.2
2699 Male, age 18, unknown 21.5
2665 Male, age 74, both hemispheres 15.8
Superior colliculus
nTPM: 29.9
1913 Female, age 42, unknown 40.2
1995 Male, age 72, unknown 36.1
2668 Female, age 75, unknown 33.2
2587 Male, age 74, left hemisphere 32.6
2261 Male, age 18, unknown 30.9
1839 Male, age 51, unknown 27.7
1895 Male, age 76, right hemisphere 26.8
1796 Male, age 53, unknown 25.3
2087 Female, age 72, unknown 25.3
2664 Male, age 75, both hemispheres 20.6
Ventral tegmental area
nTPM: 29.2
2223 Female, age 72, unknown 39.3
2410 Female, age 72, unknown 35.3
2021 Male, age 53, unknown 26.4
2218 Male, age 76, both hemispheres 25.1
1942 Male, age 51, unknown 24.8
1915 Female, age 42, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 46.3
Min nTPM: 8.1
Std nTPM: 8.0
Median nTPM: 15.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 42.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 41.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 41.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 39.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 37.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 29.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 164.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.3
FF:10158-103A5 76 years, female 164.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.1
Samples: 4

Max nTPM: 78.9
Min nTPM: 34.7
Sample A Female 48.9
Sample B Female 34.7
Sample C Male 45.9
Sample D Male 78.9
Midbrain
nTPM: 53.4
Samples: 4

Max nTPM: 79.3
Min nTPM: 36.7
Sample A Female 79.3
Sample B Female 54.7
Sample C Male 36.7
Sample D Male 42.9
Periaqueductal gray
nTPM: 45.7
Samples: 3

Max nTPM: 52.9
Min nTPM: 38.4
Sample B Female 52.9
Sample C Male 38.4
Sample D Male 45.7
Superior colliculi
nTPM: 42.0
Samples: 4

Max nTPM: 53.1
Min nTPM: 24.7
Sample A Female 45.8
Sample B Female 24.7
Sample C Male 44.4
Sample D Male 53.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 25.8
Min nTPM: 22.5
Sample A Male 22.5
Sample B Male 25.5
Sample C Female 25.8
Sample D Female 25.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74357719 Antisense, RP_060119_03_C03, Mouse strain C57BL/6J (56 days, male) 0.1
70722922 Antisense, RP_050630_03_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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