MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.4 nTPM
HPA Brain:13.4 nTPM
GTEx:7.4 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:0.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.7
1827 Male, age 72, unknown 12.4
2019 Male, age 18, unknown 11.4
2828 Female, age 72, unknown 9.9
2586 Male, age 75, left hemisphere 9.5
2666 Male, age 74, left hemisphere 8.8
1870 Female, age 42, unknown 7.9
1833 Male, age 53, unknown 7.8
2411 Female, age 72, unknown 6.7
1830 Male, age 51, unknown 6.1
2219 Male, age 76, both hemispheres 6.1
Dorsal raphe nucleus
nTPM: 8.5
2298 Female, age 72, unknown 12.9
1828 Male, age 53, unknown 8.5
2016 Female, age 72, unknown 8.3
2750 Male, age 76, both hemispheres 6.5
2047 Male, age 72, unknown 6.3
Inferior colliculus
nTPM: 9.1
2097 Female, age 72, unknown 9.9
1848 Female, age 42, unknown 9.1
2849 Male, age 72, unknown 9.0
1890 Male, age 53, unknown 8.3
Median raphe nucleus
nTPM: 5.2
2220 Male, age 76, midline 5.2
Periaquaductal grey, anterior
nTPM: 11.3
1795 Male, age 51, unknown 12.5
2502 Female, age 75, unknown 11.2
1947 Male, age 18, unknown 10.3
Periaquaductal grey, dorsal
nTPM: 9.9
2850 Male, age 76, both hemispheres 12.3
1831 Male, age 72, unknown 10.3
1840 Male, age 53, unknown 9.2
2464 Female, age 72, unknown 8.0
Periaquaductal grey, lateral
nTPM: 13.0
2272 Male, age 74, both hemispheres 18.5
2053 Male, age 18, unknown 10.6
2140 Male, age 76, both hemispheres 10.0
Pretectal area
nTPM: 13.4
1816 Male, age 51, unknown 22.5
1944 Female, age 72, unknown 21.5
2007 Male, age 72, unknown 17.2
2273 Male, age 74, both hemispheres 16.0
1817 Female, age 42, unknown 14.8
1815 Male, age 53, unknown 14.0
2407 Male, age 75, both hemispheres 9.3
2667 Female, age 75, unknown 9.3
2224 Female, age 72, unknown 8.8
2825 Male, age 18, unknown 7.5
2316 Male, age 76, right hemisphere 6.3
Red nucleus
nTPM: 7.6
2785 Male, age 18, unknown 12.1
2725 Female, age 75, unknown 8.8
1821 Female, age 72, unknown 8.6
1904 Male, age 53, unknown 7.8
1865 Male, age 51, unknown 7.6
1954 Female, age 42, unknown 7.2
2584 Male, age 75, left hemisphere 7.1
2823 Male, age 76, right hemisphere 7.0
2769 Male, age 72, unknown 6.6
2503 Female, age 72, unknown 6.4
2588 Male, age 74, left hemisphere 6.3
2227 Male, age 72, unknown 6.2
Substantia nigra
nTPM: 8.6
1889 Female, age 72, unknown 13.5
1941 Male, age 53, unknown 9.6
2409 Female, age 72, unknown 9.6
2590 Female, age 75, unknown 9.1
1916 Female, age 42, unknown 8.9
2583 Male, age 75, right hemisphere 8.8
1851 Male, age 51, unknown 7.4
2241 Male, age 72, unknown 7.2
2665 Male, age 74, both hemispheres 6.7
2699 Male, age 18, unknown 5.5
Superior colliculus
nTPM: 12.2
2261 Male, age 18, unknown 17.7
2087 Female, age 72, unknown 15.0
1796 Male, age 53, unknown 13.2
2668 Female, age 75, unknown 12.9
1895 Male, age 76, right hemisphere 11.8
2664 Male, age 75, both hemispheres 11.7
1995 Male, age 72, unknown 11.3
1913 Female, age 42, unknown 10.8
2587 Male, age 74, left hemisphere 9.5
1839 Male, age 51, unknown 8.3
Ventral tegmental area
nTPM: 6.7
2410 Female, age 72, unknown 9.6
2218 Male, age 76, both hemispheres 7.9
1915 Female, age 42, unknown 7.2
1942 Male, age 51, unknown 6.9
2021 Male, age 53, unknown 5.4
2223 Female, age 72, unknown 3.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.4
Samples: 139

Max nTPM: 18.4
Min nTPM: 3.6
Std nTPM: 2.4
Median nTPM: 6.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 18.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 14.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 12.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 11.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 11.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 10.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 10.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.0
FF:10158-103A5 76 years, female 16.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.0
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.6
Sample A Female 2.2
Sample B Female 1.6
Sample C Male 2.5
Sample D Male 1.7
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 2.8
Sample C Male 3.5
Sample D Male 3.5
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 8.2
Min nTPM: 4.4
Sample B Female 4.4
Sample C Male 7.5
Sample D Male 8.2
Superior colliculi
nTPM: 2.7
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.5
Sample A Female 2.8
Sample B Female 3.0
Sample C Male 2.5
Sample D Male 2.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Male 0.6
Sample B Male 0.5
Sample C Female 0.6
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70218366 Antisense, RP_050519_03_H09, Mouse strain C57BL/6J (56 days, male) 0.2

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