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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFYA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFYA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.1
743
Tumor
1.1
112
Tumor
0.9
123
Tumor
0.8
341
Tumor
0.8
343
Tumor
0.8
695
Tumor
0.7
685
Tumor
0.7
125
Tumor
0.7
431
Tumor
0.7
965
Tumor
0.6
354
Normal
0.6
571
Tumor
0.6
737
Tumor
0.6
351
Tumor
0.6
877
Tumor
0.6
443
Tumor
0.5
367
Tumor
0.5
425
Tumor
0.5
573
Tumor
0.5
271
Tumor
0.5
721
Tumor
0.5
141
Tumor
0.5
331
Tumor
0.5
813
Tumor
0.5
497
Tumor
0.5
635
Tumor
0.5
433
Tumor
0.5
127
Tumor
0.5
444
Normal
0.5
671
Tumor
0.5
217
Tumor
0.4
455
Tumor
0.4
413
Tumor
0.4
161
Tumor
0.4
545
Tumor
0.4
192
Normal
0.4
817
Tumor
0.4
686
Normal
0.4
567
Tumor
0.4
435
Tumor
0.4
713
Tumor
0.4
231
Tumor
0.4
572
Normal
0.4
951
Tumor
0.4
557
Tumor
0.4
663
Tumor
0.4
396
Normal
0.4
267
Tumor
0.4
715
Tumor
0.4
727
Tumor
0.4
661
Tumor
0.4
445
Tumor
0.3
171
Tumor
0.3
863
Tumor
0.3
517
Tumor
0.3
724
Normal
0.3
297
Tumor
0.3
277
Tumor
0.3
862
Normal
0.3
568
Normal
0.3
815
Tumor
0.3
558
Normal
0.3
221
Tumor
0.3
943
Tumor
0.3
213
Tumor
0.3
983
Tumor
0.3
967
Tumor
0.3
411
Tumor
0.3
744
Normal
0.3
388
Normal
0.3
647
Tumor
0.3
741
Tumor
0.3
191
Tumor
0.3
313
Tumor
0.3
538
Normal
0.3
563
Tumor
0.3
352
Normal
0.3
953
Tumor
0.3
467
Tumor
0.3
977
Tumor
0.3
113
Tumor
0.3
523
Tumor
0.3
975
Tumor
0.3
868
Normal
0.3
146
Normal
0.3
937
Tumor
0.3
126
Normal
0.3
814
Normal
0.2
421
Tumor
0.2
866
Normal
0.2
137
Tumor
0.2
211
Tumor
0.2
963
Tumor
0.2
498
Normal
0.2
864
Normal
0.2
728
Normal
0.2
615
Tumor
0.2
716
Normal
0.2
426
Normal
0.2
1025
Tumor
0.2
484
Normal
0.2
1021
Tumor
0.2
268
Normal
0.2
958
Normal
0.2
463
Tumor
0.2
823
Tumor
0.2
342
Normal
0.2
383
Tumor
0.2
777
Tumor
0.2
195
Tumor
0.2
384
Normal
0.2
394
Normal
0.2
135
Tumor
0.2
423
Tumor
0.1
285
Tumor
0.1
124
Normal
0.1
111
Normal
0.1
298
Normal
0.1
487
Tumor
0.1
332
Normal
0.1
553
Tumor
0.1
132
Normal
0.1
722
Normal
0.1
415
Tumor
0.1
488
Normal
0.1
138
Normal
0.1
114
Normal
0.1
391
Tumor
0.1
353
Tumor
0.1
375
Tumor
0.1
964
Normal
0.1
357
Tumor
0.1
142
Normal
0.1
232
Normal
0.1
672
Normal
0.1
957
Tumor
0.1
494
Normal
0.1
574
Normal
0.1
473
Tumor
0.1
185
Tumor
0.1
128
Normal
0.1
564
Normal
0.1
258
Normal
0.1
865
Tumor
0.1
366
Normal
0.1
218
Normal
0.1
311
Tumor
0.1
738
Normal
0.1
1032
Normal
0.1
446
Normal
0.1
386
Normal
0.1
262
Normal
0.1
641
Tumor
0.1
227
Tumor
0.1
478
Normal
0.1
278
Normal
0.1
358
Normal
0.1
665
Tumor
0.1
966
Normal
0.0
1015
Tumor
0.0
976
Normal
0.0
918
Normal
0.0
978
Normal
0.0
222
Normal
0.0
261
Tumor
0.0
923
Tumor
0.0
881
Tumor
0.0
392
Normal
0.0
312
Normal
0.0
461
Tumor
0.0
447
Tumor
0.0
984
Normal
0.0
533
Tumor
0.0
434
Normal
0.0
427
Tumor
0.0
365
Tumor
0.0
136
Normal
0.0
785
Tumor
0.0
272
Normal
0.0
424
Normal
0.0
414
Normal
0.0
546
Normal
0.0
224
Normal
0.0
524
Normal
0.0
1013
Tumor
0.0
1031
Tumor
0.0
968
Normal
0.0
914
Normal
0.0
534
Normal
0.0
1014
Normal
0.0
428
Normal
0.0
926
Normal
0.0
186
Normal
0.0
196
Normal
0.0
344
Normal
0.0
917
Tumor
0.0
355
Tumor
0.0
214
Normal
0.0
627
Tumor
0.0
851
Tumor
0.0
363
Tumor
-0.1
696
Normal
-0.1
1041
Tumor
-0.1
188
Normal
-0.1
492
Normal
-0.1
617
Tumor
-0.1
422
Normal
-0.1
328
Normal
-0.1
472
Normal
-0.1
954
Normal
-0.1
527
Tumor
-0.1
228
Normal
-0.1
286
Normal
-0.1
916
Normal
-0.1
921
Tumor
-0.1
1026
Normal
-0.1
465
Tumor
-0.1
883
Tumor
-0.1
525
Tumor
-0.1
361
Tumor
-0.1
1028
Normal
-0.1
474
Normal
-0.1
1022
Normal
-0.1
554
Normal
-0.1
714
Normal
-0.1
912
Normal
-0.1
913
Tumor
-0.1
528
Normal
-0.1
284
Normal
-0.1
537
Tumor
-0.1
187
Tumor
-0.1
982
Normal
-0.1
314
Normal
-0.1
436
Normal
-0.1
1027
Tumor
-0.1
283
Tumor
-0.1
466
Normal
-0.1
368
Normal
-0.1
462
Normal
-0.1
257
Tumor
-0.1
145
Tumor
-0.1
1042
Normal
-0.1
362
Normal
-0.2
477
Tumor
-0.2
432
Normal
-0.2
535
Tumor
-0.2
515
Tumor
-0.2
471
Tumor
-0.2
364
Normal
-0.2
412
Normal
-0.2
662
Normal
-0.2
723
Tumor
-0.2
925
Tumor
-0.2
922
Normal
-0.2
464
Normal
-0.2
493
Tumor
-0.2
756
Normal
-0.2
451
Tumor
-0.2
172
Normal
-0.2
387
Tumor
-0.2
648
Normal
-0.2
867
Tumor
-0.2
327
Tumor
-0.2
416
Normal
-0.2
852
Normal
-0.2
393
Tumor
-0.2
148
Normal
-0.2
742
Normal
-0.2
212
Normal
-0.2
746
Normal
-0.2
376
Normal
-0.2
664
Normal
-0.2
1016
Normal
-0.3
481
Tumor
-0.3
483
Tumor
-0.3
884
Normal
-0.3
861
Tumor
-0.3
456
Normal
-0.3
924
Normal
-0.3
858
Normal
-0.3
385
Tumor
-0.3
628
Normal
-0.3
874
Normal
-0.3
616
Normal
-0.3
873
Tumor
-0.3
1043
Tumor
-0.3
944
Normal
-0.3
857
Tumor
-0.3
636
Normal
-0.3
755
Tumor
-0.3
911
Tumor
-0.3
818
Normal
-0.3
468
Normal
-0.3
778
Normal
-0.3
938
Normal
-0.3
162
Normal
-0.3
514
Normal
-0.3
526
Normal
-0.3
223
Tumor
-0.3
491
Tumor
-0.3
955
Tumor
-0.4
666
Normal
-0.4
1045
Tumor
-0.4
147
Tumor
-0.4
642
Normal
-0.4
618
Normal
-0.4
824
Normal
-0.4
698
Normal
-0.4
878
Normal
-0.4
518
Normal
-0.4
981
Tumor
-0.4
516
Normal
-0.4
513
Tumor
-0.4
786
Normal
-0.4
536
Normal
-0.4
482
Normal
-0.5
1046
Normal
-0.5
356
Normal
-0.5
882
Normal
-0.5
952
Normal
-0.5
816
Normal
-0.5
697
Tumor
-0.5
452
Normal
-0.5
1044
Normal
-0.6
915
Tumor
-0.6
395
Tumor
-0.6
448
Normal
-0.6
745
Tumor
-0.7
956
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
