HPA IHC dataExpression profiles for proteins in 45 human tissues based on immunohistochemisty using tissue micro arrays. The tab-separated file includes Ensembl gene identifier, tissue name, annotated cell type, expression value ("Level"), and the gene reliability of the expression value ("Reliability"). The data is based on The Human Protein Atlas version24.0 and Ensembl version 109. Tissues for IHC
Annotated cell types for IHC
Consensus RNA dataConsensus transcript expression levels summarized per gene in 50 tissues based on transcriptomics data from HPA and GTEx. The consensus normalized expression ("nTPM") value is calculated as the maximum nTPM value for each gene in the two data sources. For tissues with multiple sub-tissues (brain regions, lymphoid tissues and intestine) the maximum of all sub-tissues is used for the tissue type. The tab-separated file includes Ensembl gene identifier, analysed tissue and normalized expression ("nTPM"). The data is based on The Human Protein Atlas version24.0 and Ensembl version 109. Consensus tissues
HPA RNA dataTranscript expression levels summarized per gene in 40 HPA tissues based on RNA-seq. The tab-separated file includes Ensembl gene identifier, analysed tissue, transcripts per million ("TPM"), protein-transcripts per million ("pTPM") and normalized expression ("nTPM"). The data is based onThe Human Protein Atlas version24.0 and Ensembl version 109. HPA tissues (RNA)
HPA RNA isoform dataTranscript expression levels in 186 human tissue samples based on RNA-seq. The tab-separated file includes Ensembl gene identifier, Ensembl transcript identifier, transcript per million ("TPM") and estimated counts ("est_counts") of the analysed sample ("sample_name.sample_id"). The data is based on The Human Protein Atlas version24.0 and Ensembl version 109. HPA tissue samples
GTEx RNA dataTranscript expression levels from RNA seq summarized per gene in 35 tissues based on 46 tissue subtypes and in the individual tissue subtypes. The tab-separated files includes Ensembl gene identifier, analysed tissue, transcripts per million ("TPM"), protein-transcripts per million ("pTPM") and normalized expression ("nTPM"). The data was obtained from GTEx and is based on The Human Protein Atlas version 24.0 and Ensembl version 109. Transcript expression levels from RNA seq for 105 retina samples.The tab-separated file includes Ensembl gene identifier, Ensembl transcript identifier, transcript per million ("TPM") and estimated counts of the analysed sample ("sample_name.sample_id"). The data is based on The Human Protein Atlas version 24.0 and Ensembl version 109. GTEx tissues
GTEx tissue subtypes
GTEx tissue samples 15527 GTEx tissue samples: rna_tissue_detail_gtex_samples.tsv.zip FANTOM RNA dataTranscript expression levels from CAGE data summarized per gene in 46 tissues based on 66 tissue subtypes. The tab-separated file includes Ensembl gene identifier ("Gene"), analysed sample ("Tissue"), tags per million ("Tags per million"), scaled-tags per million ("Scaled tags per million") and normalized expression ("nTPM"). The data was obtained from FANTOM5 and is based on The Human Protein Atlas version24.0 and Ensembl version 109. FANTOM tissues
FANTOM tissue subtypes
FANTOM tissue samples
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