HPA IHC data

Expression profiles for proteins in 45 human tissues based on immunohistochemisty using tissue micro arrays. The tab-separated file includes Ensembl gene identifier, tissue name, annotated cell type, expression value ("Level"), and the gene reliability of the expression value ("Reliability"). The data is based on The Human Protein Atlas version24.0 and Ensembl version 109.

Tissues for IHC

Tissue
Organ
Adipose tissueConnective & Soft tissue
Adrenal glandEndocrine tissues
AppendixBone marrow & Lymphoid tissues
Bone marrowBone marrow & Lymphoid tissues
BreastBreast and female reproductive system
BronchusRespiratory system
CaudateBrain
CerebellumBrain
Cerebral cortexBrain
CervixBreast and female reproductive system
ColonGastrointestinal tract
DuodenumGastrointestinal tract
EndometriumBreast and female reproductive system
EpididymisMale reproductive system
EsophagusProximal digestive tract
Fallopian tubeBreast and female reproductive system
GallbladderLiver & Gallbladder
Heart muscleMuscle tissues
HippocampusBrain
KidneyKidney & Urinary bladder
LiverLiver & Gallbladder
LungRespiratory system
Lymph nodeBone marrow & Lymphoid tissues
NasopharynxRespiratory system
Oral mucosaProximal digestive tract
OvaryBreast and female reproductive system
PancreasPancreas
Parathyroid glandEndocrine tissues
PlacentaBreast and female reproductive system
ProstateMale reproductive system
RectumGastrointestinal tract
Salivary glandProximal digestive tract
Seminal vesicleMale reproductive system
Skeletal muscleMuscle tissues
SkinSkin
Small intestineGastrointestinal tract
Smooth muscleMuscle tissues
Soft tissueConnective & Soft tissue
SpleenBone marrow & Lymphoid tissues
StomachGastrointestinal tract
TestisMale reproductive system
Thyroid glandEndocrine tissues
TonsilBone marrow & Lymphoid tissues
Urinary bladderKidney & Urinary bladder
VaginaBreast and female reproductive system
Download: normal_ihc_tissues.tsv.zip | 45 lines

Annotated cell types for IHC
Cell type
Tissue
Organ
AdipocytesAdipose tissueConnective & Soft tissue
AdipocytesBreastBreast and female reproductive system
Alveolar cellsLungRespiratory system
CardiomyocytesHeart muscleMuscle tissues
Cells in endometrial stromaEndometriumBreast and female reproductive system
Cells in glomeruliKidneyKidney & Urinary bladder
Cells in granular layerCerebellumBrain
Cells in molecular layerCerebellumBrain
Cells in red pulpSpleenBone marrow & Lymphoid tissues
Cells in seminiferous ductsTestisMale reproductive system
Cells in tubulesKidneyKidney & Urinary bladder
Cells in white pulpSpleenBone marrow & Lymphoid tissues
CholangiocytesLiverLiver & Gallbladder
ChondrocytesSoft tissueConnective & Soft tissue
Decidual cellsPlacentaBreast and female reproductive system
Endothelial cellsCerebral cortexBrain
Endothelial cellsColonGastrointestinal tract
Epidermal cellsSkinSkin
Exocrine glandular cellsPancreasPancreas
FibroblastsSkinSkin
FibroblastsSoft tissueConnective & Soft tissue
Follicle cellsOvaryBreast and female reproductive system
Germinal center cellsLymph nodeBone marrow & Lymphoid tissues
Germinal center cellsTonsilBone marrow & Lymphoid tissues
Glandular cellsAdrenal glandEndocrine tissues
Glandular cellsAppendixBone marrow & Lymphoid tissues
Glandular cellsBreastBreast and female reproductive system
Glandular cellsCervixBreast and female reproductive system
Glandular cellsColonGastrointestinal tract
Glandular cellsDuodenumGastrointestinal tract
Glandular cellsEndometriumBreast and female reproductive system
Glandular cellsEpididymisMale reproductive system
Glandular cellsFallopian tubeBreast and female reproductive system
Glandular cellsGallbladderLiver & Gallbladder
Glandular cellsParathyroid glandEndocrine tissues
Glandular cellsProstateMale reproductive system
Glandular cellsRectumGastrointestinal tract
Glandular cellsSalivary glandProximal digestive tract
Glandular cellsSeminal vesicleMale reproductive system
Glandular cellsSmall intestineGastrointestinal tract
Glandular cellsStomachGastrointestinal tract
Glandular cellsThyroid glandEndocrine tissues
Glial cellsCaudateBrain
Glial cellsCerebral cortexBrain
Glial cellsHippocampusBrain
Hematopoietic cellsBone marrowBone marrow & Lymphoid tissues
HepatocytesLiverLiver & Gallbladder
KeratinocytesSkinSkin
LangerhansSkinSkin
Leydig cellsTestisMale reproductive system
Lymphoid tissueAppendixBone marrow & Lymphoid tissues
MacrophagesLungRespiratory system
MelanocytesSkinSkin
MyocytesSkeletal muscleMuscle tissues
Myoepithelial cellsBreastBreast and female reproductive system
Neuronal cellsCaudateBrain
Neuronal cellsCerebral cortexBrain
Neuronal cellsHippocampusBrain
NeuropilCerebral cortexBrain
Non-germinal center cellsLymph nodeBone marrow & Lymphoid tissues
Non-germinal center cellsTonsilBone marrow & Lymphoid tissues
Ovarian stroma cellsOvaryBreast and female reproductive system
Pancreatic endocrine cellsPancreasPancreas
Peripheral nerveSoft tissueConnective & Soft tissue
Peripheral nerve/ganglionColonGastrointestinal tract
Purkinje cellsCerebellumBrain
Respiratory epithelial cellsBronchusRespiratory system
Respiratory epithelial cellsNasopharynxRespiratory system
Smooth muscle cellsSmooth muscleMuscle tissues
Squamous epithelial cellsCervixBreast and female reproductive system
Squamous epithelial cellsEsophagusProximal digestive tract
Squamous epithelial cellsOral mucosaProximal digestive tract
Squamous epithelial cellsTonsilBone marrow & Lymphoid tissues
Squamous epithelial cellsVaginaBreast and female reproductive system
Trophoblastic cellsPlacentaBreast and female reproductive system
Urothelial cellsUrinary bladderKidney & Urinary bladder
Download: normal_ihc_cell_types.tsv.zip | 76 lines

Consensus RNA data

Consensus transcript expression levels summarized per gene in 50 tissues based on transcriptomics data from HPA and GTEx. The consensus normalized expression ("nTPM") value is calculated as the maximum nTPM value for each gene in the two data sources. For tissues with multiple sub-tissues (brain regions, lymphoid tissues and intestine) the maximum of all sub-tissues is used for the tissue type. The tab-separated file includes Ensembl gene identifier, analysed tissue and normalized expression ("nTPM"). The data is based on The Human Protein Atlas version24.0 and Ensembl version 109.

Consensus tissues

Tissue
Organ
adipose tissueConnective & Soft tissue
adrenal glandEndocrine tissues
amygdalaBrain
appendixBone marrow & Lymphoid tissues
basal gangliaBrain
bone marrowBone marrow & Lymphoid tissues
breastBreast and female reproductive system
cerebellumBrain
cerebral cortexBrain
cervixBreast and female reproductive system
choroid plexusBrain
colonGastrointestinal tract
duodenumGastrointestinal tract
endometriumBreast and female reproductive system
epididymisMale reproductive system
esophagusProximal digestive tract
fallopian tubeBreast and female reproductive system
gallbladderLiver & Gallbladder
heart muscleMuscle tissues
hippocampal formationBrain
hypothalamusBrain
kidneyKidney & Urinary bladder
liverLiver & Gallbladder
lungRespiratory system
lymph nodeBone marrow & Lymphoid tissues
midbrainBrain
ovaryBreast and female reproductive system
pancreasPancreas
parathyroid glandEndocrine tissues
pituitary glandEndocrine tissues
placentaBreast and female reproductive system
prostateMale reproductive system
rectumGastrointestinal tract
retinaEye
salivary glandProximal digestive tract
seminal vesicleMale reproductive system
skeletal muscleMuscle tissues
skinSkin
small intestineGastrointestinal tract
smooth muscleMuscle tissues
spinal cordBrain
spleenBone marrow & Lymphoid tissues
stomachGastrointestinal tract
testisMale reproductive system
thymusBone marrow & Lymphoid tissues
thyroid glandEndocrine tissues
tongueProximal digestive tract
tonsilBone marrow & Lymphoid tissues
urinary bladderKidney & Urinary bladder
vaginaBreast and female reproductive system
Download: rna_tissue_consensus_tissues.tsv.zip | 50 lines

HPA RNA data

Transcript expression levels summarized per gene in 40 HPA tissues based on RNA-seq. The tab-separated file includes Ensembl gene identifier, analysed tissue, transcripts per million ("TPM"), protein-transcripts per million ("pTPM") and normalized expression ("nTPM"). The data is based onThe Human Protein Atlas version24.0 and Ensembl version 109.

HPA tissues (RNA)

Tissue
Organ
adipose tissueConnective & Soft tissue
adrenal glandEndocrine tissues
appendixBone marrow & Lymphoid tissues
bone marrowBone marrow & Lymphoid tissues
breastBreast and female reproductive system
cerebral cortexBrain
cervixBreast and female reproductive system
choroid plexusBrain
colonGastrointestinal tract
duodenumGastrointestinal tract
endometriumBreast and female reproductive system
epididymisMale reproductive system
esophagusProximal digestive tract
fallopian tubeBreast and female reproductive system
gallbladderLiver & Gallbladder
heart muscleMuscle tissues
kidneyKidney & Urinary bladder
liverLiver & Gallbladder
lungRespiratory system
lymph nodeBone marrow & Lymphoid tissues
ovaryBreast and female reproductive system
pancreasPancreas
parathyroid glandEndocrine tissues
placentaBreast and female reproductive system
prostateMale reproductive system
rectumGastrointestinal tract
salivary glandProximal digestive tract
seminal vesicleMale reproductive system
skeletal muscleMuscle tissues
skinSkin
small intestineGastrointestinal tract
smooth muscleMuscle tissues
spleenBone marrow & Lymphoid tissues
stomachGastrointestinal tract
testisMale reproductive system
thymusBone marrow & Lymphoid tissues
thyroid glandEndocrine tissues
tongueProximal digestive tract
tonsilBone marrow & Lymphoid tissues
urinary bladderKidney & Urinary bladder
Download: rna_tissue_hpa_tissues.tsv.zip | 40 lines

HPA RNA isoform data

Transcript expression levels in 186 human tissue samples based on RNA-seq. The tab-separated file includes Ensembl gene identifier, Ensembl transcript identifier, transcript per million ("TPM") and estimated counts ("est_counts") of the analysed sample ("sample_name.sample_id"). The data is based on The Human Protein Atlas version24.0 and Ensembl version 109.

HPA tissue samples

Tissue
HPA sample id
Age
Sex
adipose tissue8680Female
adipose tissue13757Female
adipose tissue11545Female
adipose tissue32974Female
adipose tissue33159Female
adrenal gland8762Female
adrenal gland8836Female
adrenal gland8963Female
appendix9226Male
appendix9337Female
appendix9453Female
bone marrow97N/AFemale
bone marrow9868Male
bone marrow998Female
bone marrow10064Male
breast39080Female
breast40547Female
breast37352Female
breast41038Female
cerebral cortex485Male
cerebral cortex10540Female
cerebral cortex10670Male
cervix37444Female
cervix38353Female
choroid plexus366676Male
choroid plexus366767Female
colon6754Male
colon7668Female
colon6857Female
colon6980Male
colon7068Male
colon39169Female
colon38480Male
colon38184Male
colon36878Female
colon40372Female
colon38978Female
colon29961Female
colon30080Male
duodenum12077Female
duodenum12168Male
endometrium11334Female
endometrium11456Female
endometrium26840Female
endometrium29760Female
endometrium30183Female
epididymis40769Male
esophagus13070Female
esophagus13138Male
esophagus13276Male
fallopian tube13666Female
fallopian tube30465Female
fallopian tube30541Female
fallopian tube30644Female
fallopian tube30780Female
gallbladder14060Male
gallbladder14174Male
gallbladder14256Female
heart muscle14948Female
heart muscle15042Female
heart muscle15153Male
heart muscle15269Female
kidney35857Female
kidney41448Female
kidney37778Male
kidney38073Male
kidney5558Female
kidney5667Female
kidney5755Female
kidney5846Male
kidney39459Female
liver2160Female
liver2354Male
liver2474Male
liver35062Female
liver35178Male
liver35253Male
liver35377Male
liver39623Female
liver36770Male
liver35972Female
lung37970Female
lung16471Female
lung16557Male
lung16671Female
lung16774Female
lung16873Female
lung37674Male
lung40663Male
lung38775Female
lymph node17334Male
lymph node17429Female
lymph node17561Female
lymph node17683Female
lymph node17752Female
ovary36627Female
ovary366316Female
ovary366420Female
ovary366532Female
ovary19264Female
ovary19352Female
ovary30880Female
pancreas19459Female
pancreas19560Male
parathyroid gland16000.1Female
parathyroid gland16010.1Male
parathyroid gland39368Female
placenta39837Female
placenta37530Female
placenta41336Female
placenta38531Female
placenta200N/AFemale
placenta20228Female
placenta20339Female
placenta20431Female
prostate5962Male
prostate36563Male
prostate36466Male
prostate41258Male
prostate38866Male
prostate36160Male
prostate20565Male
prostate20665Male
prostate20768Male
rectum33367Male
rectum33469Male
rectum33582Male
rectum33863Male
salivary gland21668Female
salivary gland21760Male
salivary gland21821Female
seminal vesicle40470Male
seminal vesicle38668Male
seminal vesicle40967Male
skeletal muscle33923Male
skeletal muscle34025Female
skeletal muscle341-Female
skeletal muscle34222Female
skeletal muscle34329Male
skin22534Female
skin22630Female
skin22757Male
small intestine23265Male
small intestine23339Male
small intestine23468Male
small intestine23585Male
smooth muscle29839Female
smooth muscle30249Female
smooth muscle33074Female
spleen37865Female
spleen23660Female
spleen23717Male
spleen23820Male
spleen23919Female
stomach6133Female
stomach36966Female
stomach24082Male
stomach24171Male
testis34951Male
testis35434Male
testis37126Male
testis24456Male
testis27834Male
testis27962Male
testis28034Male
testis28126Male
testis28250Male
testis28337Male
thymus15990.1Female
thymus16020.1Male
thymus16030.1Male
thyroid gland36321Male
thyroid gland24920Female
thyroid gland25055Female
thyroid gland25158Female
thyroid gland25248Female
tongue16040.1Male
tonsil29519Female
tonsil30923Male
tonsil31520Female
tonsil31832Male
tonsil32020Male
urinary bladder15970.1Female
urinary bladder15980.1Female
urinary bladder26474Male
urinary bladder26580Male
Download: rna_tissue_hpa_samples.tsv.zip | 186 lines

GTEx RNA data

Transcript expression levels from RNA seq summarized per gene in 35 tissues based on 46 tissue subtypes and in the individual tissue subtypes. The tab-separated files includes Ensembl gene identifier, analysed tissue, transcripts per million ("TPM"), protein-transcripts per million ("pTPM") and normalized expression ("nTPM"). The data was obtained from GTEx and is based on The Human Protein Atlas version 24.0 and Ensembl version 109.

Transcript expression levels from RNA seq for 105 retina samples.The tab-separated file includes Ensembl gene identifier, Ensembl transcript identifier, transcript per million ("TPM") and estimated counts of the analysed sample ("sample_name.sample_id"). The data is based on The Human Protein Atlas version 24.0 and Ensembl version 109.

GTEx tissues

Tissue
Organ
adipose tissueConnective & Soft tissue
adrenal glandEndocrine tissues
amygdalaBrain
basal gangliaBrain
breastBreast and female reproductive system
cerebellumBrain
cerebral cortexBrain
cervixBreast and female reproductive system
colonGastrointestinal tract
endometriumBreast and female reproductive system
esophagusProximal digestive tract
fallopian tubeBreast and female reproductive system
heart muscleMuscle tissues
hippocampal formationBrain
hypothalamusBrain
kidneyKidney & Urinary bladder
liverLiver & Gallbladder
lungRespiratory system
midbrainBrain
ovaryBreast and female reproductive system
pancreasPancreas
pituitary glandEndocrine tissues
prostateMale reproductive system
retinaEye
salivary glandProximal digestive tract
skeletal muscleMuscle tissues
skinSkin
small intestineGastrointestinal tract
spinal cordBrain
spleenBone marrow & Lymphoid tissues
stomachGastrointestinal tract
testisMale reproductive system
thyroid glandEndocrine tissues
urinary bladderKidney & Urinary bladder
vaginaBreast and female reproductive system
Download: rna_tissue_gtex_tissues.tsv.zip | 35 lines

GTEx tissue subtypes

Source tissue
Tissue
Organ
Num samples
Adipose - Subcutaneousadipose tissueConnective & Soft tissue663
Adipose - Visceral (Omentum)adipose tissueConnective & Soft tissue541
Adrenal Glandadrenal glandEndocrine tissues258
Bladderurinary bladderKidney & Urinary bladder21
Brain - AmygdalaamygdalaBrain152
Brain - Anterior cingulate cortex (BA24)cerebral cortexBrain176
Brain - Caudate (basal ganglia)caudateBrain246
Brain - Cerebellar HemispherecerebellumBrain215
Brain - CerebellumcerebellumBrain241
Brain - Cortexcerebral cortexBrain255
Brain - Frontal Cortex (BA9)cerebral cortexBrain209
Brain - HippocampushippocampusBrain197
Brain - HypothalamushypothalamusBrain202
Brain - Nucleus accumbens (basal ganglia)nucleus accumbensBrain246
Brain - Putamen (basal ganglia)putamenBrain205
Brain - Spinal cord (cervical c-1)spinal cordBrain159
Brain - Substantia nigrasubstantia nigraBrain139
Breast - Mammary TissuebreastBreast and female reproductive system459
Cervix - EctocervixcervixBreast and female reproductive system9
Cervix - EndocervixcervixBreast and female reproductive system10
Colon - SigmoidcolonGastrointestinal tract373
Colon - TransversecolonGastrointestinal tract406
Esophagus - MucosaesophagusProximal digestive tract555
Fallopian Tubefallopian tubeBreast and female reproductive system9
Heart - Atrial Appendageheart muscleMuscle tissues429
Heart - Left Ventricleheart muscleMuscle tissues432
Kidney - CortexkidneyKidney & Urinary bladder85
Kidney - MedullakidneyKidney & Urinary bladder4
LiverliverLiver & Gallbladder226
LunglungRespiratory system578
Minor Salivary Glandsalivary glandProximal digestive tract162
Muscle - Skeletalskeletal muscleMuscle tissues803
OvaryovaryBreast and female reproductive system180
PancreaspancreasPancreas328
Pituitarypituitary glandEndocrine tissues283
ProstateprostateMale reproductive system245
RetinaretinaEye105
Skin - Not Sun Exposed (Suprapubic)skinSkin604
Skin - Sun Exposed (Lower leg)skinSkin701
Small Intestine - Terminal Ileumsmall intestineGastrointestinal tract187
SpleenspleenBone marrow & Lymphoid tissues241
StomachstomachGastrointestinal tract359
TestistestisMale reproductive system361
Thyroidthyroid glandEndocrine tissues653
Uterus - EndometriumendometriumBreast and female reproductive system16
VaginavaginaBreast and female reproductive system156
Download: rna_tissue_detail_gtex_tissues.tsv.zip | 46 lines

GTEx tissue samples

15527 GTEx tissue samples: rna_tissue_detail_gtex_samples.tsv.zip

FANTOM RNA data

Transcript expression levels from CAGE data summarized per gene in 46 tissues based on 66 tissue subtypes. The tab-separated file includes Ensembl gene identifier ("Gene"), analysed sample ("Tissue"), tags per million ("Tags per million"), scaled-tags per million ("Scaled tags per million") and normalized expression ("nTPM"). The data was obtained from FANTOM5 and is based on The Human Protein Atlas version24.0 and Ensembl version 109.

FANTOM tissues

Tissue
Organ
adipose tissueConnective & Soft tissue
amygdalaBrain
appendixBone marrow & Lymphoid tissues
basal gangliaBrain
breastBreast and female reproductive system
cerebellumBrain
cerebral cortexBrain
cervixBreast and female reproductive system
colonGastrointestinal tract
corpus callosumBrain
ductus deferensMale reproductive system
endometriumBreast and female reproductive system
epididymisMale reproductive system
esophagusProximal digestive tract
gallbladderLiver & Gallbladder
heart muscleMuscle tissues
hippocampal formationBrain
kidneyKidney & Urinary bladder
liverLiver & Gallbladder
lungRespiratory system
lymph nodeBone marrow & Lymphoid tissues
midbrainBrain
olfactory bulbBrain
ovaryBreast and female reproductive system
pancreasPancreas
pituitary glandEndocrine tissues
placentaBreast and female reproductive system
ponsBrain
pons and medullaBrain
prostateMale reproductive system
retinaEye
salivary glandProximal digestive tract
seminal vesicleMale reproductive system
skeletal muscleMuscle tissues
small intestineGastrointestinal tract
smooth muscleMuscle tissues
spinal cordBrain
spleenBone marrow & Lymphoid tissues
testisMale reproductive system
thalamusBrain
thymusBone marrow & Lymphoid tissues
thyroid glandEndocrine tissues
tongueProximal digestive tract
tonsilBone marrow & Lymphoid tissues
urinary bladderKidney & Urinary bladder
vaginaBreast and female reproductive system
Download: rna_tissue_fantom_tissues.tsv.zip | 46 lines

FANTOM tissue subtypes

Source tissue
Tissue
Organ
Num samples
adipose tissueadipose tissueConnective & Soft tissue1
amygdalaamygdalaBrain1
appendixappendixBone marrow & Lymphoid tissues1
bladderurinary bladderKidney & Urinary bladder1
breastbreastBreast and female reproductive system1
caudate nucleuscaudateBrain1
cerebellumcerebellumBrain2
cervixcervixBreast and female reproductive system1
coloncolonGastrointestinal tract1
corpus callosumcorpus callosumBrain1
ductus deferensductus deferensMale reproductive system1
epididymisepididymisMale reproductive system1
esophagusesophagusProximal digestive tract1
frontal lobefrontal lobeBrain1
gall bladdergallbladderLiver & Gallbladder1
globus pallidusglobus pallidusBrain2
heartheart muscleMuscle tissues1
hippocampushippocampusBrain2
insulainsular cortexBrain1
kidneykidneyKidney & Urinary bladder1
left atriumheart muscleMuscle tissues1
left ventricleheart muscleMuscle tissues1
liverliverLiver & Gallbladder1
locus coeruleuslocus coeruleusBrain2
lunglungRespiratory system1
lung - right lower lobelungRespiratory system1
lymph nodelymph nodeBone marrow & Lymphoid tissues1
medial frontal gyrusmedial frontal gyrusBrain1
medial temporal gyrusmedial temporal gyrusBrain2
medulla oblongatamedulla oblongataBrain3
nucleus accumbensnucleus accumbensBrain1
occipital cortexoccipital cortexBrain1
occipital lobeoccipital lobeBrain1
occipital poleoccipital poleBrain1
olfactory regionolfactory bulbBrain1
ovaryovaryBreast and female reproductive system1
pancreaspancreasPancreas1
paracentral gyrusparacentral gyrusBrain1
parietal lobeparietal lobeBrain3
parotid glandsalivary glandProximal digestive tract1
pituitary glandpituitary glandEndocrine tissues1
placentaplacentaBreast and female reproductive system1
ponsponsBrain1
postcentral gyruspostcentral gyrusBrain1
prostateprostateMale reproductive system1
putamenputamenBrain1
retinaretinaEye1
salivary glandsalivary glandProximal digestive tract1
seminal vesicleseminal vesicleMale reproductive system1
skeletal muscleskeletal muscleMuscle tissues1
skeletal muscle - soleus muscleskeletal muscleMuscle tissues1
small intestinesmall intestineGastrointestinal tract1
smooth musclesmooth muscleMuscle tissues1
spinal cordspinal cordBrain2
spleenspleenBone marrow & Lymphoid tissues1
submaxillary glandsalivary glandProximal digestive tract1
substantia nigrasubstantia nigraBrain1
temporal lobetemporal cortexBrain1
testistestisMale reproductive system2
thalamusthalamusBrain1
thymusthymusBone marrow & Lymphoid tissues1
thyroidthyroid glandEndocrine tissues1
tonguetongueProximal digestive tract1
tonsiltonsilBone marrow & Lymphoid tissues1
uterusendometriumBreast and female reproductive system1
vaginavaginaBreast and female reproductive system1
Download: rna_tissue_detail_fantom_tissues.tsv.zip | 66 lines

FANTOM tissue samples

Tissue
FANTOM5 tissue
FANTOM5 sample id
Age
Sex
adipose tissueadipose tissueFF:10010-101C165,65,76Mixed
amygdalaamygdalaFF:10151-102I776Female
appendixappendixFF:10189-103D929Male
breastbreastFF:10080-102A877Female
caudatecaudate nucleusFF:10164-103B276Female
cerebellumcerebellumFF:10083-102B222-68Mixed
cerebellumcerebellumFF:10166-103B476Female
cervixcervixFF:10013-101C440,46,57,65Female
coloncolonFF:10014-101C562,83,84Mixed
corpus callosumcorpus callosumFF:10042-101F624-68Mixed
ductus deferensductus deferensFF:10196-103E724Male
endometriumuterusFF:10100-102D123-63Female
epididymisepididymisFF:10197-103E824Male
esophagusesophagusFF:10015-101C668,74,75Mixed
frontal lobefrontal lobeFF:10040-101F432-61Mixed
gallbladdergall bladderFF:10198-103E957Male
globus pallidusglobus pallidusFF:10161-103A876Female
globus pallidusglobus pallidusFF:10175-103C460Female
heart muscleheartFF:10016-101C770,73,74Mixed
heart muscleleft ventricleFF:10078-102A673Female
heart muscleleft atriumFF:10079-102A740Male
hippocampushippocampusFF:10153-102I976Female
hippocampushippocampusFF:10169-103B760Female
insular cortexinsulaFF:10039-101F320-68Mixed
kidneykidneyFF:10017-101C860,62,63Female
liverliverFF:10018-101C964,69,70Mixed
locus coeruleuslocus coeruleusFF:10165-103B376Female
locus coeruleuslocus coeruleusFF:10182-103D260Female
lunglungFF:10019-101D146,65,94Mixed
lunglung - right lower lobeFF:10075-102A329Male
lymph nodelymph nodeFF:10077-102A530Male
medial frontal gyrusmedial frontal gyrusFF:10150-102I676Female
medial temporal gyrusmedial temporal gyrusFF:10156-103A376Female
medial temporal gyrusmedial temporal gyrusFF:10183-103D360Female
medulla oblongatamedulla oblongataFF:10038-101F218-64Mixed
medulla oblongatamedulla oblongataFF:10155-103A276Female
medulla oblongatamedulla oblongataFF:10174-103C360Female
nucleus accumbensnucleus accumbensFF:10037-101F123-56Mixed
occipital cortexoccipital cortexFF:10163-103B176Female
occipital lobeoccipital lobeFF:10076-102A427Male
occipital poleoccipital poleFF:10036-101E922-68Mixed
olfactory bulbolfactory regionFF:10195-103E687Female
ovaryovaryFF:10020-101D247,75,84Female
pancreaspancreasFF:10049-101G452Male
paracentral gyrusparacentral gyrusFF:10035-101E822-69Mixed
parietal lobeparietal lobeFF:10034-101E735-89Mixed
parietal lobeparietal lobeFF:10157-103A476Female
parietal lobeparietal lobeFF:10171-103B960Female
pituitary glandpituitary glandFF:10162-103A976Female
placentaplacentaFF:10021-101D3Female
ponsponsFF:10033-101E618-54Mixed
postcentral gyruspostcentral gyrusFF:10032-101E544-52Mixed
prostateprostateFF:10022-101D473,79,93Male
putamenputamenFF:10176-103C560Female
retinaretinaFF:10030-101E324-65Mixed
salivary glandsalivary glandFF:10093-102C316-60Mixed
salivary glandparotid glandFF:10199-103F123Male
salivary glandsubmaxillary glandFF:10202-103F424Male
seminal vesicleseminal vesicleFF:10201-103F324Male
skeletal muscleskeletal muscleFF:10023-101D555,79,79Mixed
skeletal muscleskeletal muscle - soleus muscleFF:10282-104F3Male
small intestinesmall intestineFF:10024-101D615,40,85Mixed
smooth musclesmooth muscleFF:10048-101G320-68Male
spinal cordspinal cordFF:10159-103A676Female
spinal cordspinal cordFF:10181-103D160Female
spleenspleenFF:10025-101D739,50,70Male
substantia nigrasubstantia nigraFF:10158-103A576Female
temporal cortextemporal lobeFF:10031-101E432-61Mixed
testistestisFF:10026-101D834,53,86Male
testistestisFF:10096-102C614-64Male
thalamusthalamusFF:10154-103A176Female
thymusthymusFF:10027-101D90.5,0.5,0.83 years old infantMale
thyroid glandthyroidFF:10028-101E167,68,78Mixed
tonguetongueFF:10203-103F528Male
tonsiltonsilFF:10047-101G222-61Mixed
urinary bladderbladderFF:10011-101C255,58,79Mixed
vaginavaginaFF:10204-103F668Female
Download: rna_tissue_detail_fantom_samples.tsv.zip | 77 lines