Single nuclei brain data Brain regions Cluster type data Cluster data

Single nuclei brain data

Brain regions

Download: rna_single_nuclei_brain_datasets.tsv.zip | 11 lines
Brain region	Data source	Cell count	Total read count
Amygdala	linnarsson	187165	3778826743
Basal ganglia	linnarsson	295948	4518978066
Cerebellum	linnarsson	151940	800654566
Cerebral cortex	linnarsson	500000	9279411261
Hippocampus	linnarsson	347939	6452849485
Hypothalamus	linnarsson	134430	2531751407
Medulla oblongata	linnarsson	85435	657979524
Midbrain	linnarsson	249278	2548432382
Pons	linnarsson	204110	2209879371
Spinal cord	linnarsson	24183	139672409
Thalamus	linnarsson	343297	5756585457

Cluster type data

Transcript expression levels summarized per gene in 34 cluster types from 11 brain regions. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), analysed sample ("Cluster type") and normalized expresion ("nTPM").

rna_single_nuclei_cluster_type.tsv.zip

Cluster types

Download: rna_single_nuclei_cluster_type_cluster_types.tsv.zip | 34 lines
Cluster type	Cell type group
amygdala excitatory	Neuronal cells
astrocyte	Glial cells
bergmann glia	Glial cells
central nervous system macrophage	Glial cells
cerebellar inhibitory	Neuronal cells
CGE interneuron	Neuronal cells
choroid plexus epithelial cell	Glial cells
committed oligodendrocyte precursor	Glial cells
deep-layer corticothalamic and 6b	Neuronal cells
deep-layer intratelencephalic	Neuronal cells
deep-layer near-projecting	Neuronal cells
eccentric medium spiny neuron	Neuronal cells
endothelial cell	Endothelial cells
ependymal cell	Glial cells
fibroblast	Mesenchymal cells
hippocampal CA1-3	Neuronal cells
hippocampal CA4	Neuronal cells
hippocampal dentate gyrus	Neuronal cells
LAMP5-LHX6 and Chandelier	Neuronal cells
leukocyte	Blood & immune cells
lower rhombic lip	Neuronal cells
mammillary body	Neuronal cells
medium spiny neuron	Neuronal cells
MGE interneuron	Neuronal cells
midbrain-derived inhibitory	Neuronal cells
miscellaneous	Neuronal cells
oligodendrocyte	Glial cells
oligodendrocyte precursor cell	Glial cells
pericyte	Muscle cells
splatter	Neuronal cells
thalamic excitatory	Neuronal cells
upper rhombic lip	Neuronal cells
upper-layer intratelencephalic	Neuronal cells
vascular associated smooth muscle cell	Muscle cells

Cluster data

Transcript expression levels summarized per gene and cluster in 260 clusters. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), tissue ("Tissue"), analysed sample ("Cell type"), cluster ("Cluster"), read count ("Read count") and normalized expression ("nTPM").

rna_single_nuclei_brain_cluster.tsv.zip

Download: rna_single_nuclei_brain_clusters.tsv.zip | 260 lines
Brain region	Cluster	Cluster type	Cell type group	Cell count	Included in aggregation
Amygdala	c-0	Upper rhombic lip	Neuronal cells	22	No
Amygdala	c-1	Splatter	Neuronal cells	7659	Yes
Amygdala	c-2	Amygdala excitatory	Neuronal cells	61749	Yes
Amygdala	c-3	Medium spiny neuron	Neuronal cells	7324	Yes
Amygdala	c-4	Eccentric medium spiny neuron	Neuronal cells	13706	Yes
Amygdala	c-5	Midbrain-derived inhibitory	Neuronal cells	37	Yes
Amygdala	c-6	Cge interneuron	Neuronal cells	21317	Yes
Amygdala	c-7	Lamp5-lhx6 and chandelier	Neuronal cells	6288	Yes
Amygdala	c-8	Mge interneuron	Neuronal cells	7826	Yes
Amygdala	c-9	Deep-layer near-projecting	Neuronal cells	221	Yes
Amygdala	c-10	Deep-layer corticothalamic and 6b	Neuronal cells	4705	Yes
Amygdala	c-11	Miscellaneous	Neuronal cells	725	Yes
Amygdala	c-12	Hippocampal ca1-3	Neuronal cells	1039	Yes
Amygdala	c-13	Upper-layer intratelencephalic	Neuronal cells	4331	Yes
Amygdala	c-14	Deep-layer intratelencephalic	Neuronal cells	17219	Yes
Amygdala	c-15	Leukocyte	Blood & immune cells	86	Yes
Amygdala	c-16	Oligodendrocyte	Glial cells	14173	Yes
Amygdala	c-17	Committed oligodendrocyte precursor	Glial cells	466	Yes
Amygdala	c-18	Astrocyte	Glial cells	7503	Yes
Amygdala	c-19	Oligodendrocyte precursor cell	Glial cells	6413	Yes
Amygdala	c-20	Ependymal cell	Glial cells	255	Yes
Amygdala	c-21	Fibroblast	Mesenchymal cells	263	Yes
Amygdala	c-22	Pericyte	Muscle cells	79	Yes
Amygdala	c-23	Vascular associated smooth muscle cell	Muscle cells	32	Yes
Amygdala	c-24	Endothelial cell	Endothelial cells	202	Yes
Amygdala	c-25	Central nervous system macrophage	Glial cells	3525	Yes
Basal ganglia	c-0	Upper rhombic lip	Neuronal cells	150	Yes
Basal ganglia	c-1	Splatter	Neuronal cells	31151	Yes
Basal ganglia	c-2	Lower rhombic lip	Neuronal cells	899	Yes
Basal ganglia	c-3	Thalamic excitatory	Neuronal cells	479	Yes
Basal ganglia	c-4	Amygdala excitatory	Neuronal cells	348	Yes
Basal ganglia	c-5	Medium spiny neuron	Neuronal cells	125373	Yes
Basal ganglia	c-6	Eccentric medium spiny neuron	Neuronal cells	16958	Yes
Basal ganglia	c-7	Midbrain-derived inhibitory	Neuronal cells	236	Yes
Basal ganglia	c-8	Cge interneuron	Neuronal cells	4106	Yes
Basal ganglia	c-9	Lamp5-lhx6 and chandelier	Neuronal cells	975	Yes
Basal ganglia	c-10	Mge interneuron	Neuronal cells	2537	Yes
Basal ganglia	c-11	Deep-layer near-projecting	Neuronal cells	538	Yes
Basal ganglia	c-12	Deep-layer corticothalamic and 6b	Neuronal cells	1046	Yes
Basal ganglia	c-13	Miscellaneous	Neuronal cells	245	Yes
Basal ganglia	c-14	Upper-layer intratelencephalic	Neuronal cells	2089	Yes
Basal ganglia	c-15	Deep-layer intratelencephalic	Neuronal cells	2564	Yes
Basal ganglia	c-16	Leukocyte	Blood & immune cells	477	Yes
Basal ganglia	c-17	Oligodendrocyte	Glial cells	49797	Yes
Basal ganglia	c-18	Committed oligodendrocyte precursor	Glial cells	446	Yes
Basal ganglia	c-19	Astrocyte	Glial cells	19208	Yes
Basal ganglia	c-20	Oligodendrocyte precursor cell	Glial cells	7559	Yes
Basal ganglia	c-21	Ependymal cell	Glial cells	1217	Yes
Basal ganglia	c-22	Choroid plexus epithelial cell	Glial cells	6116	Yes
Basal ganglia	c-23	Fibroblast	Mesenchymal cells	1191	Yes
Basal ganglia	c-24	Pericyte	Muscle cells	370	Yes
Basal ganglia	c-25	Vascular associated smooth muscle cell	Muscle cells	112	Yes
Basal ganglia	c-26	Endothelial cell	Endothelial cells	315	Yes
Basal ganglia	c-27	Central nervous system macrophage	Glial cells	19446	Yes
Cerebellum	c-0	Upper rhombic lip	Neuronal cells	89111	Yes
Cerebellum	c-1	Lower rhombic lip	Neuronal cells	10	No
Cerebellum	c-2	Splatter	Neuronal cells	1743	Yes
Cerebellum	c-3	Miscellaneous	Neuronal cells	11	No
Cerebellum	c-4	Cerebellar inhibitory	Neuronal cells	11720	Yes
Cerebellum	c-5	Midbrain-derived inhibitory	Neuronal cells	34	Yes
Cerebellum	c-6	Leukocyte	Blood & immune cells	310	Yes
Cerebellum	c-7	Oligodendrocyte	Glial cells	22406	Yes
Cerebellum	c-8	Committed oligodendrocyte precursor	Glial cells	77	Yes
Cerebellum	c-9	Astrocyte	Glial cells	6578	Yes
Cerebellum	c-10	Bergmann glia	Glial cells	7703	Yes
Cerebellum	c-11	Oligodendrocyte precursor cell	Glial cells	6155	Yes
Cerebellum	c-12	Ependymal cell	Glial cells	18	No
Cerebellum	c-13	Fibroblast	Mesenchymal cells	424	Yes
Cerebellum	c-14	Pericyte	Muscle cells	268	Yes
Cerebellum	c-15	Vascular associated smooth muscle cell	Muscle cells	24	No
Cerebellum	c-16	Endothelial cell	Endothelial cells	372	Yes
Cerebellum	c-17	Central nervous system macrophage	Glial cells	4976	Yes
Cerebral cortex	c-0	Oligodendrocyte	Glial cells	27020	Yes
Cerebral cortex	c-1	Committed oligodendrocyte precursor	Glial cells	324	Yes
Cerebral cortex	c-2	Astrocyte	Glial cells	15988	Yes
Cerebral cortex	c-3	Oligodendrocyte precursor cell	Glial cells	9773	Yes
Cerebral cortex	c-4	Fibroblast	Mesenchymal cells	442	Yes
Cerebral cortex	c-5	Pericyte	Muscle cells	177	Yes
Cerebral cortex	c-6	Vascular associated smooth muscle cell	Muscle cells	54	Yes
Cerebral cortex	c-7	Endothelial cell	Endothelial cells	496	Yes
Cerebral cortex	c-8	Central nervous system macrophage	Glial cells	5375	Yes
Cerebral cortex	c-9	Upper rhombic lip	Neuronal cells	44	Yes
Cerebral cortex	c-10	Splatter	Neuronal cells	1773	Yes
Cerebral cortex	c-11	Thalamic excitatory	Neuronal cells	33	Yes
Cerebral cortex	c-12	Amygdala excitatory	Neuronal cells	14762	Yes
Cerebral cortex	c-13	Medium spiny neuron	Neuronal cells	3073	Yes
Cerebral cortex	c-14	Eccentric medium spiny neuron	Neuronal cells	1754	Yes
Cerebral cortex	c-15	Cge interneuron	Neuronal cells	62711	Yes
Cerebral cortex	c-16	Lamp5-lhx6 and chandelier	Neuronal cells	10556	Yes
Cerebral cortex	c-17	Mge interneuron	Neuronal cells	71085	Yes
Cerebral cortex	c-18	Deep-layer near-projecting	Neuronal cells	6630	Yes
Cerebral cortex	c-19	Deep-layer corticothalamic and 6b	Neuronal cells	22467	Yes
Cerebral cortex	c-20	Miscellaneous	Neuronal cells	4262	Yes
Cerebral cortex	c-21	Hippocampal ca1-3	Neuronal cells	228	Yes
Cerebral cortex	c-22	Upper-layer intratelencephalic	Neuronal cells	164560	Yes
Cerebral cortex	c-23	Deep-layer intratelencephalic	Neuronal cells	76239	Yes
Cerebral cortex	c-24	Leukocyte	Blood & immune cells	174	Yes
Hippocampus	c-0	Upper rhombic lip	Neuronal cells	15	No
Hippocampus	c-1	Splatter	Neuronal cells	794	Yes
Hippocampus	c-2	Amygdala excitatory	Neuronal cells	5493	Yes
Hippocampus	c-3	Eccentric medium spiny neuron	Neuronal cells	156	Yes
Hippocampus	c-4	Cge interneuron	Neuronal cells	27319	Yes
Hippocampus	c-5	Lamp5-lhx6 and chandelier	Neuronal cells	8066	Yes
Hippocampus	c-6	Mge interneuron	Neuronal cells	17787	Yes
Hippocampus	c-7	Medium spiny neuron	Neuronal cells	490	Yes
Hippocampus	c-8	Deep-layer near-projecting	Neuronal cells	234	Yes
Hippocampus	c-9	Deep-layer corticothalamic and 6b	Neuronal cells	12280	Yes
Hippocampus	c-10	Miscellaneous	Neuronal cells	7317	Yes
Hippocampus	c-11	Hippocampal ca1-3	Neuronal cells	73235	Yes
Hippocampus	c-12	Upper-layer intratelencephalic	Neuronal cells	3124	Yes
Hippocampus	c-13	Deep-layer intratelencephalic	Neuronal cells	4022	Yes
Hippocampus	c-14	Hippocampal dentate gyrus	Neuronal cells	66837	Yes
Hippocampus	c-15	Hippocampal ca4	Neuronal cells	10551	Yes
Hippocampus	c-16	Leukocyte	Blood & immune cells	239	Yes
Hippocampus	c-17	Oligodendrocyte	Glial cells	49888	Yes
Hippocampus	c-18	Committed oligodendrocyte precursor	Glial cells	594	Yes
Hippocampus	c-19	Astrocyte	Glial cells	27778	Yes
Hippocampus	c-20	Oligodendrocyte precursor cell	Glial cells	16581	Yes
Hippocampus	c-21	Ependymal cell	Glial cells	1929	Yes
Hippocampus	c-22	Choroid plexus epithelial cell	Glial cells	68	Yes
Hippocampus	c-23	Fibroblast	Mesenchymal cells	685	Yes
Hippocampus	c-24	Pericyte	Muscle cells	249	Yes
Hippocampus	c-25	Vascular associated smooth muscle cell	Muscle cells	65	Yes
Hippocampus	c-26	Endothelial cell	Endothelial cells	850	Yes
Hippocampus	c-27	Central nervous system macrophage	Glial cells	11293	Yes
Hypothalamus	c-0	Upper rhombic lip	Neuronal cells	105	Yes
Hypothalamus	c-1	Splatter	Neuronal cells	70808	Yes
Hypothalamus	c-2	Mammillary body	Neuronal cells	16571	Yes
Hypothalamus	c-3	Amygdala excitatory	Neuronal cells	1919	Yes
Hypothalamus	c-4	Medium spiny neuron	Neuronal cells	6995	Yes
Hypothalamus	c-5	Eccentric medium spiny neuron	Neuronal cells	3337	Yes
Hypothalamus	c-6	Midbrain-derived inhibitory	Neuronal cells	2242	Yes
Hypothalamus	c-7	Cge interneuron	Neuronal cells	2226	Yes
Hypothalamus	c-8	Lamp5-lhx6 and chandelier	Neuronal cells	651	Yes
Hypothalamus	c-9	Mge interneuron	Neuronal cells	1407	Yes
Hypothalamus	c-10	Deep-layer near-projecting	Neuronal cells	175	Yes
Hypothalamus	c-11	Deep-layer corticothalamic and 6b	Neuronal cells	277	Yes
Hypothalamus	c-12	Miscellaneous	Neuronal cells	338	Yes
Hypothalamus	c-13	Upper-layer intratelencephalic	Neuronal cells	2396	Yes
Hypothalamus	c-14	Deep-layer intratelencephalic	Neuronal cells	581	Yes
Hypothalamus	c-15	Leukocyte	Blood & immune cells	214	Yes
Hypothalamus	c-16	Oligodendrocyte	Glial cells	10646	Yes
Hypothalamus	c-17	Committed oligodendrocyte precursor	Glial cells	443	Yes
Hypothalamus	c-18	Astrocyte	Glial cells	5366	Yes
Hypothalamus	c-19	Oligodendrocyte precursor cell	Glial cells	3353	Yes
Hypothalamus	c-20	Ependymal cell	Glial cells	216	Yes
Hypothalamus	c-21	Fibroblast	Mesenchymal cells	417	Yes
Hypothalamus	c-22	Pericyte	Muscle cells	78	Yes
Hypothalamus	c-23	Vascular associated smooth muscle cell	Muscle cells	117	Yes
Hypothalamus	c-24	Endothelial cell	Endothelial cells	189	Yes
Hypothalamus	c-25	Central nervous system macrophage	Glial cells	3363	Yes
Medulla oblongata	c-0	Upper rhombic lip	Neuronal cells	18335	Yes
Medulla oblongata	c-1	Splatter	Neuronal cells	25408	Yes
Medulla oblongata	c-2	Lower rhombic lip	Neuronal cells	2497	Yes
Medulla oblongata	c-3	Miscellaneous	Neuronal cells	15	No
Medulla oblongata	c-4	Cerebellar inhibitory	Neuronal cells	728	Yes
Medulla oblongata	c-5	Midbrain-derived inhibitory	Neuronal cells	79	Yes
Medulla oblongata	c-6	Leukocyte	Blood & immune cells	238	Yes
Medulla oblongata	c-7	Oligodendrocyte	Glial cells	22750	Yes
Medulla oblongata	c-8	Committed oligodendrocyte precursor	Glial cells	120	Yes
Medulla oblongata	c-9	Astrocyte	Glial cells	5497	Yes
Medulla oblongata	c-10	Bergmann glia	Glial cells	149	Yes
Medulla oblongata	c-11	Oligodendrocyte precursor cell	Glial cells	2697	Yes
Medulla oblongata	c-12	Ependymal cell	Glial cells	931	Yes
Medulla oblongata	c-13	Choroid plexus epithelial cell	Glial cells	1435	Yes
Medulla oblongata	c-14	Fibroblast	Mesenchymal cells	585	Yes
Medulla oblongata	c-15	Pericyte	Muscle cells	192	Yes
Medulla oblongata	c-16	Vascular associated smooth muscle cell	Muscle cells	132	Yes
Medulla oblongata	c-17	Endothelial cell	Endothelial cells	374	Yes
Medulla oblongata	c-18	Central nervous system macrophage	Glial cells	3273	Yes
Midbrain	c-0	Upper rhombic lip	Neuronal cells	9277	Yes
Midbrain	c-1	Splatter	Neuronal cells	82161	Yes
Midbrain	c-2	Lower rhombic lip	Neuronal cells	236	Yes
Midbrain	c-3	Thalamic excitatory	Neuronal cells	3069	Yes
Midbrain	c-4	Amygdala excitatory	Neuronal cells	17	No
Midbrain	c-5	Miscellaneous	Neuronal cells	1194	Yes
Midbrain	c-6	Cerebellar inhibitory	Neuronal cells	326	Yes
Midbrain	c-7	Midbrain-derived inhibitory	Neuronal cells	29336	Yes
Midbrain	c-8	Cge interneuron	Neuronal cells	707	Yes
Midbrain	c-9	Lamp5-lhx6 and chandelier	Neuronal cells	125	Yes
Midbrain	c-10	Mge interneuron	Neuronal cells	173	Yes
Midbrain	c-11	Deep-layer corticothalamic and 6b	Neuronal cells	63	Yes
Midbrain	c-12	Upper-layer intratelencephalic	Neuronal cells	193	Yes
Midbrain	c-13	Deep-layer intratelencephalic	Neuronal cells	19	No
Midbrain	c-14	Hippocampal dentate gyrus	Neuronal cells	362	Yes
Midbrain	c-15	Hippocampal ca4	Neuronal cells	51	Yes
Midbrain	c-16	Leukocyte	Blood & immune cells	516	Yes
Midbrain	c-17	Oligodendrocyte	Glial cells	80202	Yes
Midbrain	c-18	Committed oligodendrocyte precursor	Glial cells	175	Yes
Midbrain	c-19	Astrocyte	Glial cells	13278	Yes
Midbrain	c-20	Bergmann glia	Glial cells	29	No
Midbrain	c-21	Oligodendrocyte precursor cell	Glial cells	11894	Yes
Midbrain	c-22	Ependymal cell	Glial cells	276	Yes
Midbrain	c-23	Fibroblast	Mesenchymal cells	710	Yes
Midbrain	c-24	Pericyte	Muscle cells	256	Yes
Midbrain	c-25	Vascular associated smooth muscle cell	Muscle cells	108	Yes
Midbrain	c-26	Endothelial cell	Endothelial cells	285	Yes
Midbrain	c-27	Central nervous system macrophage	Glial cells	14240	Yes
Pons	c-0	Upper rhombic lip	Neuronal cells	19040	Yes
Pons	c-1	Splatter	Neuronal cells	33128	Yes
Pons	c-2	Lower rhombic lip	Neuronal cells	48985	Yes
Pons	c-3	Miscellaneous	Neuronal cells	14	No
Pons	c-4	Cerebellar inhibitory	Neuronal cells	1559	Yes
Pons	c-5	Midbrain-derived inhibitory	Neuronal cells	3770	Yes
Pons	c-6	Leukocyte	Blood & immune cells	487	Yes
Pons	c-7	Oligodendrocyte	Glial cells	64564	Yes
Pons	c-8	Committed oligodendrocyte precursor	Glial cells	169	Yes
Pons	c-9	Astrocyte	Glial cells	10539	Yes
Pons	c-10	Bergmann glia	Glial cells	149	Yes
Pons	c-11	Oligodendrocyte precursor cell	Glial cells	11865	Yes
Pons	c-12	Ependymal cell	Glial cells	425	Yes
Pons	c-13	Choroid plexus epithelial cell	Glial cells	20	No
Pons	c-14	Fibroblast	Mesenchymal cells	1008	Yes
Pons	c-15	Pericyte	Muscle cells	469	Yes
Pons	c-16	Vascular associated smooth muscle cell	Muscle cells	90	Yes
Pons	c-17	Endothelial cell	Endothelial cells	507	Yes
Pons	c-18	Central nervous system macrophage	Glial cells	7322	Yes
Spinal cord	c-0	Upper rhombic lip	Neuronal cells	859	Yes
Spinal cord	c-1	Splatter	Neuronal cells	4910	Yes
Spinal cord	c-2	Cerebellar inhibitory	Neuronal cells	44	Yes
Spinal cord	c-3	Leukocyte	Blood & immune cells	219	Yes
Spinal cord	c-4	Oligodendrocyte	Glial cells	11503	Yes
Spinal cord	c-5	Committed oligodendrocyte precursor	Glial cells	44	Yes
Spinal cord	c-6	Astrocyte	Glial cells	2435	Yes
Spinal cord	c-7	Bergmann glia	Glial cells	7	No
Spinal cord	c-8	Oligodendrocyte precursor cell	Glial cells	1970	Yes
Spinal cord	c-9	Ependymal cell	Glial cells	147	Yes
Spinal cord	c-10	Fibroblast	Mesenchymal cells	68	Yes
Spinal cord	c-11	Pericyte	Muscle cells	78	Yes
Spinal cord	c-12	Vascular associated smooth muscle cell	Muscle cells	8	No
Spinal cord	c-13	Endothelial cell	Endothelial cells	215	Yes
Spinal cord	c-14	Central nervous system macrophage	Glial cells	1676	Yes
Thalamus	c-0	Upper rhombic lip	Neuronal cells	132	Yes
Thalamus	c-1	Splatter	Neuronal cells	29251	Yes
Thalamus	c-2	Thalamic excitatory	Neuronal cells	81897	Yes
Thalamus	c-3	Amygdala excitatory	Neuronal cells	171	Yes
Thalamus	c-4	Medium spiny neuron	Neuronal cells	3700	Yes
Thalamus	c-5	Eccentric medium spiny neuron	Neuronal cells	1314	Yes
Thalamus	c-6	Midbrain-derived inhibitory	Neuronal cells	91033	Yes
Thalamus	c-7	Cge interneuron	Neuronal cells	3337	Yes
Thalamus	c-8	Lamp5-lhx6 and chandelier	Neuronal cells	740	Yes
Thalamus	c-9	Mge interneuron	Neuronal cells	346	Yes
Thalamus	c-10	Deep-layer corticothalamic and 6b	Neuronal cells	9	No
Thalamus	c-11	Miscellaneous	Neuronal cells	36	Yes
Thalamus	c-12	Upper-layer intratelencephalic	Neuronal cells	83	Yes
Thalamus	c-13	Deep-layer intratelencephalic	Neuronal cells	17	No
Thalamus	c-14	Hippocampal dentate gyrus	Neuronal cells	314	Yes
Thalamus	c-15	Hippocampal ca4	Neuronal cells	11	No
Thalamus	c-16	Leukocyte	Blood & immune cells	488	Yes
Thalamus	c-17	Oligodendrocyte	Glial cells	91385	Yes
Thalamus	c-18	Committed oligodendrocyte precursor	Glial cells	1351	Yes
Thalamus	c-19	Astrocyte	Glial cells	13648	Yes
Thalamus	c-20	Oligodendrocyte precursor cell	Glial cells	10695	Yes
Thalamus	c-21	Ependymal cell	Glial cells	467	Yes
Thalamus	c-22	Choroid plexus epithelial cell	Glial cells	39	Yes
Thalamus	c-23	Fibroblast	Mesenchymal cells	2566	Yes
Thalamus	c-24	Pericyte	Muscle cells	1171	Yes
Thalamus	c-25	Vascular associated smooth muscle cell	Muscle cells	249	Yes
Thalamus	c-26	Endothelial cell	Endothelial cells	654	Yes
Thalamus	c-27	Central nervous system macrophage	Glial cells	8193	Yes