Single cell type expression cluster

Expression clustersUMAP1UMAP2
IDi
Main specificityi
Main functioni
# Genesi
Annotation reliabilityi
1 Erythroid cells Oxygen transport 138 High
2 Skeletal myocytes Muscle contraction 133 High
3 Basal prostatic cells Lipid metabolism 162 Medium
4 Extravillous trophoblasts Unknown function 182 Medium
5 Enterocytes Absorption 330 Medium
6 Ovarian stromal cells Transcription 188 Medium
7 T-cells T-cell receptor 246 Medium
8 Neurons Neuronal signaling 265 Medium
9 Endometrial stromal cells Transcription 129 Medium
10 Muller glia cells Visual perception 166 High
11 Late spermatids Unknown function 430 Medium
12 Squamous epithelial cells Keratinization 309 High
13 Spermatids Transcription 116 High
14 Langerhans cells Innate immune response 131 Medium
15 Non-specific Mixed function 295 Low
16 Intestinal goblet cells Mucin production 268 Medium
17 Breast glandular cells Lactation 115 Medium
18 Early spermatids Unknown function 283 High
19 NK-cells Adaptive immune response 266 Medium
20 Enteroendocrine cells Hormone signaling 85 High
21 Early spermatids Spermatogenesis 337 Medium
22 Proximal enterocytes Digestion 255 High
23 Plasma cells Humoral immune response 80 High
24 Cytotrophoblasts Mitochondria 235 Medium
25 Bipolar cells Visual perception 152 Medium
26 Schwann cells & Melanocytes Mixed function 63 High
27 Syncytiotrophoblasts Pregnancy 142 Medium
28 Dendritic cells Antigen presentation 245 Medium
29 Monocytes Innate immune response 447 Medium
30 Granulocytes Unknown function 76 Medium
31 Spermatocytes Spermatogenesis 240 High
32 Smooth muscle cells Muscle contraction 236 Medium
33 Non-specific DNA binding 138 Medium
34 Neurons Neuronal signaling 518 Medium
35 Respiratory epithelial cells Unknown function 196 Low
36 Late spermatids Unknown function 427 High
37 Glandular & Luminal cells Unknown function 334 Low
38 Proximal tubular cells Transmembrane transport 131 High
39 Non-specific Basic cellular processes 835 Medium
40 Prostatic glandular cells Transcription 76 High
41 Adipocytes & Endothelial cells Mixed function 325 Medium
42 Ciliated cells Cilium assembly 429 High
43 Hepatocytes Metabolism 200 High
44 Oocytes Unknown function 133 High
45 Non-specific Mixed function 349 Medium
46 Gastric mucus-secreting cells Digestion 41 Medium
47 Astrocytes Unknown function 196 High
48 Smooth muscle cells Signal transduction 187 Medium
49 Non-specific Transcription 378 Medium
50 Connective tissue cells ECM organization 176 Medium
51 Oligodendrocytes Unknown function 302 Medium
52 Non-specific Cell proliferation 248 High
53 Fibroblasts ECM organization 305 High
54 Lymphatic endothelial cells Lymph vessel development 108 Medium
55 Non-specific Transcription 709 High
56 Proximal tubular cells Amino acid metabolism 204 Medium
57 Platelets Hemostasis 173 High
58 Macrophages Innate immune response 420 Medium
59 Suprabasal keratinocytes Cornification 186 High
60 Pancreatic exocrine cells Proteolysis 47 Medium
61 Plasma cells Immunoglobulins & histones 169 High
62 Hepatocytes Metabolism 159 High
63 Late spermatids Spermatogenesis 383 Medium
64 Non-specific Ribosome 168 High
65 Neurons Synaptic function 250 High
66 Photoreceptor cells Visual perception 340 High
67 Spermatogonia Spermatogenesis 123 High
68 Cardiomyocytes Muscle contraction 262 High
69 Neurons Neuronal signaling 331 High
70 Spermatocytes & Spermatids Spermatid development 376 High
71 Horizontal & Bipolar cells Neuronal signaling 205 High
72 Alveolar cells Lung function 121 High
73 B-cells B-cell function 195 High
74 Neutrophils Degranulation 174 High
75 Serous glandular cells Salivary secretion 145 Medium
76 Oligodendrocyte precursor Unknown function 210 Medium
77 Plasma cells Protein processing 324 Medium
78 NK-cells & T-cells Immune system & Transcription 392 Medium
79 Spermatocytes & Spermatogonia Spermatogenesis 176 High
80 Non-specific Transcription 184 High

The interactive UMAP plot displays the 80 gene clusters resulting from Louvain clustering of gene expression across all single cell types. General information about the different clusters regarding annotation and number of included genes is shown upon mouse-over, while clicking on a specific cluster in the table will highlight the selected cluster in the plot and display the general information together with a heatmap of the RNA expression across all single cell types for corresponding genes and a Gene Ontology treemap showing the enrichment of GO-terms in the cluster, where applicable.

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Adipocytes
Blood & immune cells
Endocrine cells
Endothelial cells
Germ cells
Glandular epithelial cells
Glial cells
Mesenchymal cells
Muscle cells
Neuronal cells
Specialized epithelial cells
Squamous epithelial cells
Trophoblast cells
Other
Non-Specific