Single cell type data

Overview of the included samples and data in the Single Cell Type Resource, the details on this page is for the samples included in the aggregated cell type comparison (based on the 81 cell types in the Cell type data- table, a comparison with the external clustering done by Tabula Sapiens is further described and can be found here.
Tissue datasets summarise the origin and reference to imported dataset
Cell type data summarises the 81 different cell types and which of the 15 cell type groups they belong to.
Cluster data summarises the details for each cluster of the different tissues, and includes information such as cell count, reliability and whether the cluster is included in the cell type categorization.

Tissue datasets

Read count per gene and cell in 31 datasets. The zip-archive contains one folder for each dataset with 2 files each, one tab-separated file in matrix format with Ensembl gene identifiers as rows and single cells as columns and one tab-seperated file with metadata for each cell.

Tissues

Tissue
Data source
Cell count
Total read count
pubmed_id
Adipose tissueGSE15596080083351112072Hildreth AD et al. (2021)
Bone marrowGSE159929-GSM485058434849828121He S et al. (2020)
BrainAllen brain765331403880211
BreastGSE16489846126262070266Bhat-Nakshatri P et al. (2021)
Bronchusfig119810342667687937419Lukassen S et al. (2020)
ColonGSE116222530247116433Parikh K et al. (2019)
EndometriumGSE11197652594284460906Wang W et al. (2020)
EsophagusGSE159929-GSM48505801044133032715He S et al. (2020)
EyeGSE137537955512599591Menon M et al. (2019)
Fallopian tubeGSE17810162514416449141Ulrich ND et al. (2022)
Heart muscleGSE109816601255819847Wang L et al. (2020)
KidneyGSE1316851836535938228Liao J et al. (2020)
LiverGSE1154691117532810093MacParland SA et al. (2018)
LungTabula sapiens27756349563543Tabula Sapiens Consortium* et al. (2022)
Lymph nodeGSE159929-GSM4850583907616414437He S et al. (2020)
OvaryE-MTAB-838137104144420729Wagner M et al. (2020)
PancreasGSE1318865313110026542Qadir MMF et al. (2020)
PBMCGSE112845527418888359Chen J et al. (2018)
PlacentaE-MTAB-670125615325974138Vento-Tormo R et al. (2018)
ProstateTabula sapiens1900990677103Tabula Sapiens Consortium* et al. (2022)
RectumGSE125970263844202773Wang Y et al. (2020)
Salivary glandTabula sapiens28809231713370Tabula Sapiens Consortium* et al. (2022)
Skeletal muscleGSE1437042457961023625De Micheli AJ et al. (2020)
SkinGSE1309732233557386544Solรฉ-Boldo L et al. (2020)
Small intestineGSE125970546045814551Wang Y et al. (2020)
SpleenGSE159929-GSM4850589449215642257He S et al. (2020)
StomachGSE159929-GSM4850590570120369599He S et al. (2020)
TestisGSE120508645965159826Guo J et al. (2018)
ThymusTabula sapiens23618196969456Tabula Sapiens Consortium* et al. (2022)
TongueTabula sapiens18331283674894Tabula Sapiens Consortium* et al. (2022)
VascularTabula sapiens9172172452947Tabula Sapiens Consortium* et al. (2022)
Download: rna_single_cell_datasets.tsv.zip | 31 lines

Cell type data

Transcript expression levels summarized per gene in 81 cell types from 31 datasets. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), analysed sample ("Cell type") and normalized expresion ("nTPM").

Cell types

Cell type
Cell type group
AdipocytesAdipocytes
Alveolar cells typeSpecialized epithelial cells
Alveolar cells type 2Specialized epithelial cells
AstrocytesGlial cells
B-cellsBlood & immune cells
Basal keratinocytesSquamous epithelial cells
Basal prostatic cellsGlandular epithelial cells
Basal respiratory cellsGlandular epithelial cells
Basal squamous epithelial cellsSquamous epithelial cells
Bipolar cellsNeuronal cells
Breast glandular cellsGlandular epithelial cells
Breast myoepithelial cellsGlandular epithelial cells
CardiomyocytesMuscle cells
CholangiocytesSpecialized epithelial cells
Ciliated cellsGlandular epithelial cells
Club cellsGlandular epithelial cells
Collecting duct cellsSpecialized epithelial cells
Cone photoreceptor cellsNeuronal cells
CytotrophoblastsTrophoblast cells
dendritic cellsBlood & immune cells
Distal enterocytesGlandular epithelial cells
Distal tubular cellsSpecialized epithelial cells
Ductal cellsSpecialized epithelial cells
Early spermatidsGerm cells
Endometrial stromal cellsMesenchymal cells
Endothelial cellsEndothelial cells
Enteroendocrine cellsEndocrine cells
Erythroid cellsBlood & immune cells
Excitatory neuronsNeuronal cells
Exocrine glandular cellsGlandular epithelial cells
Extravillous trophoblastsTrophoblast cells
FibroblastsMesenchymal cells
Gastric mucus-secreting cellsGlandular epithelial cells
Glandular and luminal cellsGlandular epithelial cells
granulocytesBlood & immune cells
Granulosa cellsSpecialized epithelial cells
HepatocytesSpecialized epithelial cells
Hofbauer cellsBlood & immune cells
Horizontal cellsNeuronal cells
Inhibitory neuronsNeuronal cells
Intestinal goblet cellsGlandular epithelial cells
IonocytesGlandular epithelial cells
Kupffer cellsBlood & immune cells
Langerhans cellsBlood & immune cells
Late spermatidsGerm cells
Leydig cellsEndocrine cells
Lymphatic endothelial cellsEndothelial cells
MacrophagesBlood & immune cells
MelanocytesPigment cells
Mesothelial cellsSpecialized epithelial cells
Microglial cellsGlial cells
monocytesBlood & immune cells
Mucus glandular cellsGlandular epithelial cells
Muller glia cellsGlial cells
NK-cellsBlood & immune cells
Oligodendrocyte precursor cellsGlial cells
OligodendrocytesGlial cells
OocytesGerm cells
Ovarian stromal cellsMesenchymal cells
Pancreatic endocrine cellsEndocrine cells
Paneth cellsGlandular epithelial cells
Peritubular cellsMesenchymal cells
Plasma cellsBlood & immune cells
Prostatic glandular cellsGlandular epithelial cells
Proximal enterocytesGlandular epithelial cells
Proximal tubular cellsSpecialized epithelial cells
Rod photoreceptor cellsNeuronal cells
Salivary duct cellsSpecialized epithelial cells
Schwann cellsGlial cells
Secretory cellsGlandular epithelial cells
Serous glandular cellsGlandular epithelial cells
Sertoli cellsSpecialized epithelial cells
Skeletal myocytesMuscle cells
Smooth muscle cellsMuscle cells
SpermatocytesGerm cells
SpermatogoniaGerm cells
Squamous epithelial cellsSquamous epithelial cells
Suprabasal keratinocytesSquamous epithelial cells
SyncytiotrophoblastsTrophoblast cells
T-cellsBlood & immune cells
Undifferentiated cellsUndifferentiated cells
Download: rna_single_cell_type_cell_types.tsv.zip | 81 lines

Cluster data

Transcript expression levels summarized per gene and cluster in 31 datasets. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), tissue ("Tissue"), analysed sample ("Cell type"), cluster ("Cluster"), read count ("Read count") and normalized expression ("nTPM").

Clusters

Tissue
Cluster
Cell type
Cell type group
Cell count
Included in aggregation
Annotation reliability
Adipose tissuec-0FibroblastsMesenchymal cells14945YesMedium
Adipose tissuec-1T-cellsBlood & immune cells10011YesHigh
Adipose tissuec-2T-cellsBlood & immune cells7279YesHigh
Adipose tissuec-3T-cellsBlood & immune cells7200YesHigh
Adipose tissuec-4Nk-cellsBlood & immune cells5823YesHigh
Adipose tissuec-5FibroblastsMesenchymal cells5512YesHigh
Adipose tissuec-6FibroblastsMesenchymal cells4986YesHigh
Adipose tissuec-7T-cellsBlood & immune cells3989YesHigh
Adipose tissuec-8FibroblastsMesenchymal cells3382YesHigh
Adipose tissuec-9MacrophagesBlood & immune cells2888YesHigh
Adipose tissuec-10MacrophagesBlood & immune cells2669YesMedium
Adipose tissuec-11T-cellsBlood & immune cells2144YesHigh
Adipose tissuec-12AdipocytesAdipocytes1746YesHigh
Adipose tissuec-13MacrophagesBlood & immune cells1573YesHigh
Adipose tissuec-14Nk-cellsBlood & immune cells1302YesHigh
Adipose tissuec-15Smooth muscle cellsMuscle cells1197YesHigh
Adipose tissuec-16T-cellsBlood & immune cells1157YesHigh
Adipose tissuec-17MonocytesBlood & immune cells889YesMedium
Adipose tissuec-18B-cellsBlood & immune cells735YesHigh
Adipose tissuec-19Schwann cellsGlial cells337YesMedium
Adipose tissuec-20Dendritic cellsBlood & immune cells167YesHigh
Adipose tissuec-21T-cellsBlood & immune cells152YesMedium
Bone marrowc-0T-cellsBlood & immune cells967YesHigh
Bone marrowc-1T-cellsBlood & immune cells641YesHigh
Bone marrowc-2T-cellsBlood & immune cells556YesHigh
Bone marrowc-3B-cellsBlood & immune cells491YesHigh
Bone marrowc-4T-cellsBlood & immune cells296YesHigh
Bone marrowc-5MacrophagesBlood & immune cells184YesHigh
Bone marrowc-6T-cellsBlood & immune cells142YesHigh
Bone marrowc-7Erythroid cellsBlood & immune cells118YesMedium
Bone marrowc-8Plasma cellsBlood & immune cells45YesHigh
Bone marrowc-9B-cellsBlood & immune cells44YesMedium
Brainc-0Excitatory neuronsNeuronal cells4644YesHigh
Brainc-1Excitatory neuronsNeuronal cells4370YesHigh
Brainc-2Excitatory neuronsNeuronal cells3732YesHigh
Brainc-3Excitatory neuronsNeuronal cells3724YesHigh
Brainc-4Excitatory neuronsNeuronal cells3519YesHigh
Brainc-5Inhibitory neuronsNeuronal cells3513YesHigh
Brainc-6Inhibitory neuronsNeuronal cells3482YesHigh
Brainc-7Excitatory neuronsNeuronal cells3220YesHigh
Brainc-8Inhibitory neuronsNeuronal cells3114YesHigh
Brainc-9Excitatory neuronsNeuronal cells2451YesHigh
Brainc-10Excitatory neuronsNeuronal cells2401YesHigh
Brainc-11Excitatory neuronsNeuronal cells2360YesHigh
Brainc-12OligodendrocytesGlial cells2309YesHigh
Brainc-13Excitatory neuronsNeuronal cells2275YesHigh
Brainc-14Inhibitory neuronsNeuronal cells2250YesHigh
Brainc-15Inhibitory neuronsNeuronal cells1993YesHigh
Brainc-16Excitatory neuronsNeuronal cells1927YesHigh
Brainc-17Inhibitory neuronsNeuronal cells1775YesHigh
Brainc-18Excitatory neuronsNeuronal cells1697YesHigh
Brainc-19Excitatory neuronsNeuronal cells1630YesHigh
Brainc-20Excitatory neuronsNeuronal cells1507YesHigh
Brainc-21Inhibitory neuronsNeuronal cells1424YesHigh
Brainc-22Excitatory neuronsNeuronal cells1397YesHigh
Brainc-23Inhibitory neuronsNeuronal cells1351YesHigh
Brainc-24Excitatory neuronsNeuronal cells1293YesHigh
Brainc-25Inhibitory neuronsNeuronal cells1230YesHigh
Brainc-26Inhibitory neuronsNeuronal cells1218YesHigh
Brainc-27Excitatory neuronsNeuronal cells1146YesHigh
Brainc-28Inhibitory neuronsNeuronal cells963YesHigh
Brainc-29Excitatory neuronsNeuronal cells925YesHigh
Brainc-30Inhibitory neuronsNeuronal cells920YesHigh
Brainc-31Excitatory neuronsNeuronal cells858YesHigh
Brainc-32Excitatory neuronsNeuronal cells826YesHigh
Brainc-33Excitatory neuronsNeuronal cells730YesHigh
Brainc-34Excitatory neuronsNeuronal cells709YesHigh
Brainc-35AstrocytesGlial cells567YesHigh
Brainc-36Excitatory neuronsNeuronal cells557YesHigh
Brainc-37OligodendrocytesGlial cells542YesHigh
Brainc-38Inhibitory neuronsNeuronal cells466YesHigh
Brainc-39Excitatory neuronsNeuronal cells324YesHigh
Brainc-40Excitatory neuronsNeuronal cells298YesHigh
Brainc-41Inhibitory neuronsNeuronal cells293YesHigh
Brainc-42Oligodendrocyte precursor cellsGlial cells286YesMedium
Brainc-43Microglial cellsGlial cells206YesMedium
Brainc-44Excitatory neuronsNeuronal cells111YesMedium
Breastc-0T-cellsBlood & immune cells4621YesHigh
Breastc-1Breast glandular cellsGlandular epithelial cells3920YesHigh
Breastc-2T-cellsBlood & immune cells3428YesHigh
Breastc-3MacrophagesBlood & immune cells2849YesMedium
Breastc-4Breast glandular cellsGlandular epithelial cells2778YesHigh
Breastc-5FibroblastsMesenchymal cells2707YesHigh
Breastc-6AdipocytesAdipocytes2658YesMedium
Breastc-7AdipocytesAdipocytes2380YesMedium
Breastc-8AdipocytesAdipocytes2368YesMedium
Breastc-9Breast glandular cellsGlandular epithelial cells2284YesMedium
Breastc-10T-cellsBlood & immune cells2194YesHigh
Breastc-11Breast glandular cellsGlandular epithelial cells1905YesMedium
Breastc-12FibroblastsMesenchymal cells1891YesHigh
Breastc-13FibroblastsMesenchymal cells1466YesHigh
Breastc-14Smooth muscle cellsMuscle cells1466YesHigh
Breastc-15T-cellsBlood & immune cells1460YesMedium
Breastc-16Breast glandular cellsGlandular epithelial cells1269YesHigh
Breastc-17Breast glandular cellsGlandular epithelial cells1139YesHigh
Breastc-18MacrophagesBlood & immune cells1012NoLow
Breastc-19MacrophagesBlood & immune cells930YesMedium
Breastc-20Breast myoepithelial cellsGlandular epithelial cells482YesHigh
Breastc-21Breast glandular cellsGlandular epithelial cells470YesHigh
Breastc-22Endothelial cellsEndothelial cells221YesMedium
Breastc-23AdipocytesAdipocytes175YesMedium
Breastc-24T-cellsBlood & immune cells53YesMedium
Bronchusc-0Basal respiratory cellsGlandular epithelial cells3223YesMedium
Bronchusc-1Club cellsGlandular epithelial cells3163YesMedium
Bronchusc-2IonocytesGlandular epithelial cells2866YesMedium
Bronchusc-3Basal respiratory cellsGlandular epithelial cells2400YesMedium
Bronchusc-4Club cellsGlandular epithelial cells2068YesMedium
Bronchusc-5Basal respiratory cellsGlandular epithelial cells1960YesMedium
Bronchusc-6Club cellsGlandular epithelial cells1794YesMedium
Bronchusc-7Ciliated cellsGlandular epithelial cells1595YesMedium
Bronchusc-8Club cellsGlandular epithelial cells1519YesMedium
Bronchusc-9Basal respiratory cellsGlandular epithelial cells1374YesMedium
Bronchusc-10Ciliated cellsGlandular epithelial cells1298YesMedium
Bronchusc-11Club cellsGlandular epithelial cells1249YesMedium
Bronchusc-12Ciliated cellsGlandular epithelial cells1192YesMedium
Bronchusc-13Smooth muscle cellsMuscle cells664NoLow
Bronchusc-14Basal respiratory cellsGlandular epithelial cells311YesMedium
Colonc-0Distal enterocytesGlandular epithelial cells967YesHigh
Colonc-1Undifferentiated cellsUndifferentiated cells827NoLow
Colonc-2Distal enterocytesGlandular epithelial cells675YesMedium
Colonc-3Distal enterocytesGlandular epithelial cells660NoLow
Colonc-4Intestinal goblet cellsGlandular epithelial cells609YesHigh
Colonc-5Enteroendocrine cellsEndocrine cells516YesHigh
Colonc-6T-cellsBlood & immune cells422YesMedium
Colonc-7Undifferentiated cellsUndifferentiated cells397YesMedium
Colonc-8Undifferentiated cellsUndifferentiated cells98YesMedium
Colonc-9Distal enterocytesGlandular epithelial cells76YesMedium
Colonc-10Distal enterocytesGlandular epithelial cells55YesHigh
Endometriumc-0Glandular and luminal cellsGlandular epithelial cells5085YesHigh
Endometriumc-1Endometrial stromal cellsMesenchymal cells4647YesHigh
Endometriumc-2T-cellsBlood & immune cells4321YesHigh
Endometriumc-3Glandular and luminal cellsGlandular epithelial cells4284YesHigh
Endometriumc-4Endometrial stromal cellsMesenchymal cells4089YesHigh
Endometriumc-5Endometrial stromal cellsMesenchymal cells3378YesHigh
Endometriumc-6Glandular and luminal cellsGlandular epithelial cells3364YesHigh
Endometriumc-7Endometrial stromal cellsMesenchymal cells2355YesHigh
Endometriumc-8Ciliated cellsGlandular epithelial cells2304YesHigh
Endometriumc-9Glandular and luminal cellsGlandular epithelial cells2177YesHigh
Endometriumc-10Glandular and luminal cellsGlandular epithelial cells1994YesHigh
Endometriumc-11Glandular and luminal cellsGlandular epithelial cells1911YesHigh
Endometriumc-12Glandular and luminal cellsGlandular epithelial cells1805YesHigh
Endometriumc-13Endometrial stromal cellsMesenchymal cells1648YesHigh
Endometriumc-14Endometrial stromal cellsMesenchymal cells1401YesHigh
Endometriumc-15Endothelial cellsEndothelial cells1348YesHigh
Endometriumc-16Glandular and luminal cellsGlandular epithelial cells1296YesHigh
Endometriumc-17Glandular and luminal cellsGlandular epithelial cells1190YesHigh
Endometriumc-18Smooth muscle cellsMuscle cells987YesHigh
Endometriumc-19Endometrial stromal cellsMesenchymal cells859YesHigh
Endometriumc-20Endometrial stromal cellsMesenchymal cells734YesHigh
Endometriumc-21Glandular and luminal cellsGlandular epithelial cells689YesHigh
Endometriumc-22MacrophagesBlood & immune cells402YesHigh
Endometriumc-23Endothelial cellsEndothelial cells268YesHigh
Endometriumc-24Glandular and luminal cellsGlandular epithelial cells58YesHigh
Esophagusc-0FibroblastsMesenchymal cells1682YesHigh
Esophagusc-1Squamous epithelial cellsSquamous epithelial cells1427YesMedium
Esophagusc-2Basal squamous epithelial cellsSquamous epithelial cells1387YesHigh
Esophagusc-3Endothelial cellsEndothelial cells1148YesHigh
Esophagusc-4FibroblastsMesenchymal cells912YesHigh
Esophagusc-5Squamous epithelial cellsSquamous epithelial cells851YesHigh
Esophagusc-6FibroblastsMesenchymal cells817YesHigh
Esophagusc-7Smooth muscle cellsMuscle cells547YesHigh
Esophagusc-8T-cellsBlood & immune cells453YesHigh
Esophagusc-9MacrophagesBlood & immune cells449YesHigh
Esophagusc-10Squamous epithelial cellsSquamous epithelial cells341YesMedium
Esophagusc-11B-cellsBlood & immune cells175YesHigh
Esophagusc-12Plasma cellsBlood & immune cells118YesMedium
Esophagusc-13Endothelial cellsEndothelial cells86YesMedium
Esophagusc-14Schwann cellsGlial cells48YesHigh
Eyec-0Rod photoreceptor cellsNeuronal cells3275YesHigh
Eyec-1Bipolar cellsNeuronal cells1379YesHigh
Eyec-2Muller glia cellsGlial cells1357YesHigh
Eyec-3Bipolar cellsNeuronal cells776YesMedium
Eyec-4Rod photoreceptor cellsNeuronal cells539YesHigh
Eyec-5Horizontal cellsNeuronal cells487YesMedium
Eyec-6Muller glia cellsGlial cells437YesHigh
Eyec-7Muller glia cellsGlial cells432YesHigh
Eyec-8Rod photoreceptor cellsNeuronal cells347YesHigh
Eyec-9Muller glia cellsGlial cells334YesMedium
Eyec-10Cone photoreceptor cellsNeuronal cells114YesHigh
Eyec-11Bipolar cellsNeuronal cells78YesHigh
Fallopian tubec-0Secretory cellsGlandular epithelial cells5817YesMedium
Fallopian tubec-1Smooth muscle cellsMuscle cells4390YesHigh
Fallopian tubec-2Secretory cellsGlandular epithelial cells4089YesMedium
Fallopian tubec-3FibroblastsMesenchymal cells3851YesHigh
Fallopian tubec-4Endothelial cellsEndothelial cells3735YesHigh
Fallopian tubec-5FibroblastsMesenchymal cells3628YesHigh
Fallopian tubec-6FibroblastsMesenchymal cells3355YesHigh
Fallopian tubec-7FibroblastsMesenchymal cells2824YesHigh
Fallopian tubec-8T-cellsBlood & immune cells2720YesHigh
Fallopian tubec-9T-cellsBlood & immune cells2601YesHigh
Fallopian tubec-10Smooth muscle cellsMuscle cells2341YesHigh
Fallopian tubec-11Secretory cellsGlandular epithelial cells2333YesHigh
Fallopian tubec-12Ciliated cellsGlandular epithelial cells2329YesHigh
Fallopian tubec-13Lymphatic endothelial cellsEndothelial cells2268YesHigh
Fallopian tubec-14MacrophagesBlood & immune cells2024YesHigh
Fallopian tubec-15Secretory cellsGlandular epithelial cells2006YesMedium
Fallopian tubec-16MacrophagesBlood & immune cells1905YesMedium
Fallopian tubec-17FibroblastsMesenchymal cells1885YesHigh
Fallopian tubec-18GranulocytesBlood & immune cells1848YesHigh
Fallopian tubec-19Ciliated cellsGlandular epithelial cells1768YesHigh
Fallopian tubec-20T-cellsBlood & immune cells1731YesHigh
Fallopian tubec-21NeutrophilsBlood & immune cells902NoHigh
Fallopian tubec-22T-cellsBlood & immune cells670YesHigh
Fallopian tubec-23Plasma cellsBlood & immune cells535YesMedium
Fallopian tubec-24Ciliated cellsGlandular epithelial cells464YesHigh
Fallopian tubec-25Smooth muscle cellsMuscle cells382YesMedium
Fallopian tubec-26Lymphatic endothelial cellsEndothelial cells68YesMedium
Fallopian tubec-27FibroblastsMesenchymal cells45NoLow
Heart musclec-0CardiomyocytesMuscle cells1148YesHigh
Heart musclec-1CardiomyocytesMuscle cells1118YesHigh
Heart musclec-2CardiomyocytesMuscle cells787YesMedium
Heart musclec-3Smooth muscle cellsMuscle cells781NoLow
Heart musclec-4Endothelial cellsEndothelial cells602YesMedium
Heart musclec-5CardiomyocytesMuscle cells538YesHigh
Heart musclec-6Endothelial cellsEndothelial cells498YesHigh
Heart musclec-7FibroblastsMesenchymal cells318YesHigh
Heart musclec-8CardiomyocytesMuscle cells222YesMedium
Kidneyc-0Proximal tubular cellsSpecialized epithelial cells3995YesMedium
Kidneyc-1Proximal tubular cellsSpecialized epithelial cells2900YesMedium
Kidneyc-2Proximal tubular cellsSpecialized epithelial cells2572YesHigh
Kidneyc-3Proximal tubular cellsSpecialized epithelial cells2368YesHigh
Kidneyc-4Proximal tubular cellsSpecialized epithelial cells2127YesHigh
Kidneyc-5Proximal tubular cellsSpecialized epithelial cells1410YesHigh
Kidneyc-6T-cellsBlood & immune cells734YesMedium
Kidneyc-7MacrophagesBlood & immune cells636YesHigh
Kidneyc-8Proximal tubular cellsSpecialized epithelial cells571YesHigh
Kidneyc-9Proximal tubular cellsSpecialized epithelial cells510YesMedium
Kidneyc-10Distal tubular cellsSpecialized epithelial cells309YesMedium
Kidneyc-11B-cellsBlood & immune cells127YesHigh
Kidneyc-12Collecting duct cellsSpecialized epithelial cells106YesMedium
Liverc-0HepatocytesSpecialized epithelial cells1363YesHigh
Liverc-1T-cellsBlood & immune cells984YesHigh
Liverc-2Kupffer cellsBlood & immune cells856YesHigh
Liverc-3Plasma cellsBlood & immune cells777YesHigh
Liverc-4HepatocytesSpecialized epithelial cells777YesHigh
Liverc-5Endothelial cellsEndothelial cells697YesMedium
Liverc-6Kupffer cellsBlood & immune cells675YesMedium
Liverc-7Smooth muscle cellsMuscle cells625YesMedium
Liverc-8T-cellsBlood & immune cells596YesHigh
Liverc-9HepatocytesSpecialized epithelial cells595YesHigh
Liverc-10Kupffer cellsBlood & immune cells564YesHigh
Liverc-11FibroblastsMesenchymal cells513YesMedium
Liverc-12HepatocytesSpecialized epithelial cells501YesHigh
Liverc-13T-cellsBlood & immune cells474YesMedium
Liverc-14T-cellsBlood & immune cells413YesMedium
Liverc-15Kupffer cellsBlood & immune cells373YesHigh
Liverc-16B-cellsBlood & immune cells181YesHigh
Liverc-17CholangiocytesSpecialized epithelial cells96YesHigh
Liverc-18HepatocytesSpecialized epithelial cells64YesHigh
Liverc-19Erythroid cellsBlood & immune cells51YesHigh
Lungc-0Alveolar cells type 2Specialized epithelial cells3281YesHigh
Lungc-1MacrophagesBlood & immune cells3078YesHigh
Lungc-2MacrophagesBlood & immune cells3001YesHigh
Lungc-3Alveolar cells type 1Specialized epithelial cells2162YesMedium
Lungc-4MacrophagesBlood & immune cells1505YesHigh
Lungc-5Endothelial cellsEndothelial cells1452YesHigh
Lungc-6Alveolar cells type 1Specialized epithelial cells1295YesMedium
Lungc-7Endothelial cellsEndothelial cells1227YesHigh
Lungc-8Alveolar cells type 2Specialized epithelial cells1196YesHigh
Lungc-9FibroblastsMesenchymal cells1145YesMedium
Lungc-10T-cellsBlood & immune cells1132YesMedium
Lungc-11Alveolar cells type 2Specialized epithelial cells994YesHigh
Lungc-12MacrophagesBlood & immune cells869YesHigh
Lungc-13MacrophagesBlood & immune cells636YesHigh
Lungc-14GranulocytesBlood & immune cells624YesMedium
Lungc-15MacrophagesBlood & immune cells555YesHigh
Lungc-16T-cellsBlood & immune cells546YesMedium
Lungc-17Alveolar cells type 2Specialized epithelial cells532NoLow
Lungc-18Endothelial cellsEndothelial cells481YesHigh
Lungc-19Club cellsGlandular epithelial cells432YesHigh
Lungc-20B-cellsBlood & immune cells313YesHigh
Lungc-21Endothelial cellsEndothelial cells300YesHigh
Lungc-22MacrophagesBlood & immune cells297YesMedium
Lungc-23Ciliated cellsGlandular epithelial cells254YesMedium
Lungc-24Smooth muscle cellsMuscle cells186YesHigh
Lungc-25Endothelial cellsEndothelial cells140YesHigh
Lungc-26Ciliated cellsGlandular epithelial cells123NoVery low
Lymph nodec-0B-cellsBlood & immune cells2283YesHigh
Lymph nodec-1B-cellsBlood & immune cells2025YesHigh
Lymph nodec-2T-cellsBlood & immune cells1926YesHigh
Lymph nodec-3T-cellsBlood & immune cells1520YesHigh
Lymph nodec-4B-cellsBlood & immune cells876YesHigh
Lymph nodec-5T-cellsBlood & immune cells316YesHigh
Lymph nodec-6Mixed cell typesMixed cell types130NoMedium
Ovaryc-0Ovarian stromal cellsMesenchymal cells6312YesHigh
Ovaryc-1Ovarian stromal cellsMesenchymal cells5365YesHigh
Ovaryc-2Ovarian stromal cellsMesenchymal cells4080YesHigh
Ovaryc-3Ovarian stromal cellsMesenchymal cells2560YesMedium
Ovaryc-4Ovarian stromal cellsMesenchymal cells2543YesMedium
Ovaryc-5Smooth muscle cellsMuscle cells2441YesHigh
Ovaryc-6Ovarian stromal cellsMesenchymal cells2377YesMedium
Ovaryc-7Ovarian stromal cellsMesenchymal cells2307YesHigh
Ovaryc-8Ovarian stromal cellsMesenchymal cells2122YesHigh
Ovaryc-9Smooth muscle cellsMuscle cells1917YesHigh
Ovaryc-10Endothelial cellsEndothelial cells1803YesHigh
Ovaryc-11Smooth muscle cellsMuscle cells1792YesMedium
Ovaryc-12Ovarian stromal cellsMesenchymal cells641NoLow
Ovaryc-13Granulosa cellsSpecialized epithelial cells471YesHigh
Ovaryc-14Mixed immune cellsBlood & immune cells220NoHigh
Ovaryc-15OocytesGerm cells80YesHigh
Ovaryc-16Lymphatic endothelial cellsEndothelial cells73YesHigh
Pancreasc-0Ductal cellsSpecialized epithelial cells767YesMedium
Pancreasc-1Exocrine glandular cellsGlandular epithelial cells744NoLow
Pancreasc-2Ductal cellsSpecialized epithelial cells742YesHigh
Pancreasc-3Mixed cell typesMixed cell types447NoVery low
Pancreasc-4Mixed cell typesMixed cell types407NoVery low
Pancreasc-5Exocrine glandular cellsGlandular epithelial cells334YesHigh
Pancreasc-6Ductal cellsSpecialized epithelial cells316YesMedium
Pancreasc-7Pancreatic endocrine cellsEndocrine cells270YesHigh
Pancreasc-8FibroblastsMesenchymal cells226YesMedium
Pancreasc-9Exocrine glandular cellsGlandular epithelial cells189YesHigh
Pancreasc-10Exocrine glandular cellsGlandular epithelial cells180YesMedium
Pancreasc-11Exocrine glandular cellsGlandular epithelial cells176YesHigh
Pancreasc-12Ductal cellsSpecialized epithelial cells173NoLow
Pancreasc-13Ductal cellsSpecialized epithelial cells114YesMedium
Pancreasc-14Mixed immune cellsBlood & immune cells105NoLow
Pancreasc-15Mixed cell typesMixed cell types64NoVery low
Pancreasc-16MacrophagesBlood & immune cells38YesHigh
Pancreasc-17Endothelial cellsEndothelial cells21YesHigh
PBMCc-0MacrophagesBlood & immune cells1350NoLow
PBMCc-1T-cellsBlood & immune cells1207YesHigh
PBMCc-2T-cellsBlood & immune cells554YesHigh
PBMCc-3T-cellsBlood & immune cells466YesHigh
PBMCc-4Nk-cellsBlood & immune cells404YesHigh
PBMCc-5T-cellsBlood & immune cells344YesMedium
PBMCc-6MonocytesBlood & immune cells289NoLow
PBMCc-7T-cellsBlood & immune cells271YesHigh
PBMCc-8B-cellsBlood & immune cells228YesHigh
PBMCc-9PlateletsBlood & immune cells123NoHigh
PBMCc-10Dendritic cellsBlood & immune cells38YesHigh
Placentac-0CytotrophoblastsTrophoblast cells4365YesHigh
Placentac-1Smooth muscle cellsMuscle cells2371YesMedium
Placentac-2Extravillous trophoblastsTrophoblast cells2171YesHigh
Placentac-3CytotrophoblastsTrophoblast cells1701YesHigh
Placentac-4Hofbauer cellsBlood & immune cells1698YesHigh
Placentac-5CytotrophoblastsTrophoblast cells1519YesHigh
Placentac-6SyncytiotrophoblastsTrophoblast cells1396YesMedium
Placentac-7Hofbauer cellsBlood & immune cells1242YesHigh
Placentac-8Extravillous trophoblastsTrophoblast cells1138YesHigh
Placentac-9Smooth muscle cellsMuscle cells1037YesMedium
Placentac-10CytotrophoblastsTrophoblast cells816YesMedium
Placentac-11CytotrophoblastsTrophoblast cells792YesMedium
Placentac-12CytotrophoblastsTrophoblast cells731YesHigh
Placentac-13CytotrophoblastsTrophoblast cells725YesHigh
Placentac-14Hofbauer cellsBlood & immune cells632YesMedium
Placentac-15FibroblastsMesenchymal cells601YesHigh
Placentac-16Smooth muscle cellsMuscle cells534YesMedium
Placentac-17T-cellsBlood & immune cells483NoLow
Placentac-18Smooth muscle cellsMuscle cells275YesHigh
Placentac-19Endothelial cellsEndothelial cells245YesMedium
Placentac-20FibroblastsMesenchymal cells244NoLow
Placentac-21Mixed immune cellsBlood & immune cells187NoVery low
Placentac-22FibroblastsMesenchymal cells180YesHigh
Placentac-23Smooth muscle cellsMuscle cells173YesMedium
Placentac-24Smooth muscle cellsMuscle cells157YesMedium
Placentac-25Extravillous trophoblastsTrophoblast cells139YesHigh
Placentac-26Mixed immune cellsBlood & immune cells63NoVery low
Prostatec-0Mixed cell typesMixed cell types3436NoVery low
Prostatec-1Mixed cell typesMixed cell types2980NoVery low
Prostatec-2Basal prostatic cellsGlandular epithelial cells2408YesMedium
Prostatec-3Basal prostatic cellsGlandular epithelial cells2264YesMedium
Prostatec-4T-cellsBlood & immune cells1862YesMedium
Prostatec-5Mixed cell typesMixed cell types1693NoVery low
Prostatec-6MacrophagesBlood & immune cells992YesHigh
Prostatec-7Endothelial cellsEndothelial cells982YesMedium
Prostatec-8Prostatic glandular cellsGlandular epithelial cells552YesHigh
Prostatec-9Club cellsGlandular epithelial cells432YesMedium
Prostatec-10Smooth muscle cellsMuscle cells402YesHigh
Prostatec-11Endothelial cellsEndothelial cells351NoLow
Prostatec-12FibroblastsMesenchymal cells275YesHigh
Prostatec-13T-cellsBlood & immune cells271YesMedium
Prostatec-14Prostatic glandular cellsGlandular epithelial cells109YesHigh
Rectumc-0Intestinal goblet cellsGlandular epithelial cells562NoLow
Rectumc-1Intestinal goblet cellsGlandular epithelial cells402YesHigh
Rectumc-2Undifferentiated cellsUndifferentiated cells331YesHigh
Rectumc-3Paneth cellsGlandular epithelial cells301YesMedium
Rectumc-4Intestinal goblet cellsGlandular epithelial cells279YesMedium
Rectumc-5Undifferentiated cellsUndifferentiated cells267YesMedium
Rectumc-6Intestinal goblet cellsGlandular epithelial cells179YesMedium
Rectumc-7Distal enterocytesGlandular epithelial cells138YesHigh
Rectumc-8Mixed immune cellsBlood & immune cells92NoHigh
Rectumc-9Enteroendocrine cellsEndocrine cells87YesHigh
Salivary glandc-0Serous glandular cellsGlandular epithelial cells3573YesHigh
Salivary glandc-1Serous glandular cellsGlandular epithelial cells3236NoLow
Salivary glandc-2Serous glandular cellsGlandular epithelial cells2962YesHigh
Salivary glandc-3B-cellsBlood & immune cells2396YesHigh
Salivary glandc-4Mucus glandular cellsGlandular epithelial cells2206YesHigh
Salivary glandc-5Mucus glandular cellsGlandular epithelial cells1932YesHigh
Salivary glandc-6B-cellsBlood & immune cells1512YesHigh
Salivary glandc-7T-cellsBlood & immune cells1447YesMedium
Salivary glandc-8MacrophagesBlood & immune cells1296YesMedium
Salivary glandc-9Serous glandular cellsGlandular epithelial cells1118YesMedium
Salivary glandc-10Serous glandular cellsGlandular epithelial cells1025YesHigh
Salivary glandc-11MacrophagesBlood & immune cells894YesHigh
Salivary glandc-12Salivary duct cellsSpecialized epithelial cells877YesHigh
Salivary glandc-13FibroblastsMesenchymal cells776YesHigh
Salivary glandc-14Serous glandular cellsGlandular epithelial cells737YesHigh
Salivary glandc-15Endothelial cellsEndothelial cells694YesHigh
Salivary glandc-16Serous glandular cellsGlandular epithelial cells501YesHigh
Salivary glandc-17FibroblastsMesenchymal cells420YesHigh
Salivary glandc-18Plasma cellsBlood & immune cells316YesMedium
Salivary glandc-19FibroblastsMesenchymal cells309YesMedium
Salivary glandc-20Smooth muscle cellsMuscle cells173YesMedium
Salivary glandc-21Mixed immune cellsBlood & immune cells165NoMedium
Salivary glandc-22Smooth muscle cellsMuscle cells138YesHigh
Salivary glandc-23T-cellsBlood & immune cells106YesMedium
Skeletal musclec-0Endothelial cellsEndothelial cells2606YesMedium
Skeletal musclec-1FibroblastsMesenchymal cells2287YesMedium
Skeletal musclec-2Smooth muscle cellsMuscle cells2284YesHigh
Skeletal musclec-3FibroblastsMesenchymal cells2186YesMedium
Skeletal musclec-4Mixed cell typesMixed cell types1784NoVery low
Skeletal musclec-5T-cellsBlood & immune cells1674YesMedium
Skeletal musclec-6FibroblastsMesenchymal cells1563YesMedium
Skeletal musclec-7FibroblastsMesenchymal cells1414YesHigh
Skeletal musclec-8Mixed cell typesMixed cell types1384NoMedium
Skeletal musclec-9FibroblastsMesenchymal cells1193YesMedium
Skeletal musclec-10Endothelial cellsEndothelial cells1160YesMedium
Skeletal musclec-11FibroblastsMesenchymal cells1077YesHigh
Skeletal musclec-12Endothelial cellsEndothelial cells916YesHigh
Skeletal musclec-13Smooth muscle cellsMuscle cells907YesMedium
Skeletal musclec-14MacrophagesBlood & immune cells857YesHigh
Skeletal musclec-15MacrophagesBlood & immune cells661YesHigh
Skeletal musclec-16Skeletal myocytesMuscle cells292YesHigh
Skeletal musclec-17FibroblastsMesenchymal cells192YesHigh
Skeletal musclec-18FibroblastsMesenchymal cells108YesMedium
Skeletal musclec-19FibroblastsMesenchymal cells34YesHigh
Skinc-0FibroblastsMesenchymal cells3083YesMedium
Skinc-1FibroblastsMesenchymal cells2433YesMedium
Skinc-2T-cellsBlood & immune cells2335YesHigh
Skinc-3FibroblastsMesenchymal cells2193YesHigh
Skinc-4Endothelial cellsEndothelial cells1895YesMedium
Skinc-5Langerhans cellsBlood & immune cells1776YesMedium
Skinc-6Suprabasal keratinocytesSquamous epithelial cells1734YesHigh
Skinc-7Basal keratinocytesSquamous epithelial cells1313YesHigh
Skinc-8Smooth muscle cellsMuscle cells1172YesMedium
Skinc-9MacrophagesBlood & immune cells961YesHigh
Skinc-10FibroblastsMesenchymal cells869YesMedium
Skinc-11Smooth muscle cellsMuscle cells680YesMedium
Skinc-12Endothelial cellsEndothelial cells451NoVery low
Skinc-13Langerhans cellsBlood & immune cells428YesMedium
Skinc-14MelanocytesPigment cells330YesHigh
Skinc-15B-cellsBlood & immune cells268YesMedium
Skinc-16GranulocytesBlood & immune cells205NoLow
Skinc-17Endothelial cellsEndothelial cells123YesMedium
Skinc-18Smooth muscle cellsMuscle cells86YesHigh
Small intestinec-0Proximal enterocytesGlandular epithelial cells852YesMedium
Small intestinec-1Proximal enterocytesGlandular epithelial cells820YesMedium
Small intestinec-2Intestinal goblet cellsGlandular epithelial cells773YesMedium
Small intestinec-3Undifferentiated cellsUndifferentiated cells711YesMedium
Small intestinec-4Proximal enterocytesGlandular epithelial cells626YesMedium
Small intestinec-5Proximal enterocytesGlandular epithelial cells592YesMedium
Small intestinec-6Undifferentiated cellsUndifferentiated cells346YesMedium
Small intestinec-7Proximal enterocytesGlandular epithelial cells340YesMedium
Small intestinec-8Intestinal goblet cellsGlandular epithelial cells147YesMedium
Small intestinec-9Paneth cellsGlandular epithelial cells86YesMedium
Small intestinec-10Mixed cell typesMixed cell types75NoHigh
Small intestinec-11Enteroendocrine cellsEndocrine cells66YesHigh
Small intestinec-12Mixed immune cellsBlood & immune cells26NoMedium
Spleenc-0B-cellsBlood & immune cells1126YesHigh
Spleenc-1T-cellsBlood & immune cells848YesHigh
Spleenc-2T-cellsBlood & immune cells775YesHigh
Spleenc-3MacrophagesBlood & immune cells396YesMedium
Spleenc-4Plasma cellsBlood & immune cells369YesHigh
Spleenc-5T-cellsBlood & immune cells364YesMedium
Spleenc-6T-cellsBlood & immune cells355YesHigh
Spleenc-7T-cellsBlood & immune cells205YesHigh
Spleenc-8B-cellsBlood & immune cells54YesMedium
Stomachc-0B-cellsBlood & immune cells1127YesHigh
Stomachc-1T-cellsBlood & immune cells1071YesMedium
Stomachc-2T-cellsBlood & immune cells852YesMedium
Stomachc-3T-cellsBlood & immune cells747YesHigh
Stomachc-4T-cellsBlood & immune cells624YesHigh
Stomachc-5Plasma cellsBlood & immune cells599YesHigh
Stomachc-6Gastric mucus-secreting cellsGlandular epithelial cells430YesHigh
Stomachc-7FibroblastsMesenchymal cells150YesMedium
Stomachc-8MacrophagesBlood & immune cells101YesHigh
Testisc-0Leydig cellsEndocrine cells609YesMedium
Testisc-1SpermatocytesGerm cells547YesHigh
Testisc-2Late spermatidsGerm cells475YesHigh
Testisc-3Early spermatidsGerm cells419YesHigh
Testisc-4SpermatogoniaGerm cells412YesHigh
Testisc-5Late spermatidsGerm cells393YesMedium
Testisc-6Late spermatidsGerm cells361YesHigh
Testisc-7Endothelial cellsEndothelial cells355YesHigh
Testisc-8Early spermatidsGerm cells353YesHigh
Testisc-9Late spermatidsGerm cells341YesMedium
Testisc-10MacrophagesBlood & immune cells338YesHigh
Testisc-11Late spermatidsGerm cells315YesHigh
Testisc-12Peritubular cellsMesenchymal cells309YesHigh
Testisc-13Late spermatidsGerm cells270YesMedium
Testisc-14SpermatogoniaGerm cells266YesHigh
Testisc-15Late spermatidsGerm cells201YesMedium
Testisc-16SpermatocytesGerm cells171YesHigh
Testisc-17SpermatocytesGerm cells153YesHigh
Testisc-18Early spermatidsGerm cells128NoLow
Testisc-19Sertoli cellsSpecialized epithelial cells43YesMedium
Thymusc-0T-cellsBlood & immune cells3806YesHigh
Thymusc-1T-cellsBlood & immune cells3326YesHigh
Thymusc-2B-cellsBlood & immune cells2439YesHigh
Thymusc-3FibroblastsMesenchymal cells2311YesHigh
Thymusc-4T-cellsBlood & immune cells2297YesHigh
Thymusc-5Endothelial cellsEndothelial cells1653YesHigh
Thymusc-6B-cellsBlood & immune cells1082YesHigh
Thymusc-7FibroblastsMesenchymal cells988YesHigh
Thymusc-8Endothelial cellsEndothelial cells967YesHigh
Thymusc-9Plasma cellsBlood & immune cells880YesHigh
Thymusc-10Smooth muscle cellsMuscle cells614YesHigh
Thymusc-11Smooth muscle cellsMuscle cells603YesHigh
Thymusc-12Smooth muscle cellsMuscle cells566YesHigh
Thymusc-13MacrophagesBlood & immune cells507YesHigh
Thymusc-14FibroblastsMesenchymal cells486YesMedium
Thymusc-15Plasma cellsBlood & immune cells384YesHigh
Thymusc-16Endothelial cellsEndothelial cells303YesMedium
Thymusc-17Mesothelial cellsSpecialized epithelial cells171YesMedium
Thymusc-18T-cellsBlood & immune cells144YesHigh
Thymusc-19Plasma cellsBlood & immune cells91YesHigh
Tonguec-0Basal keratinocytesSquamous epithelial cells2855YesHigh
Tonguec-1Basal keratinocytesSquamous epithelial cells2154YesHigh
Tonguec-2Basal keratinocytesSquamous epithelial cells1894YesHigh
Tonguec-3Suprabasal keratinocytesSquamous epithelial cells1535YesHigh
Tonguec-4Basal keratinocytesSquamous epithelial cells1259YesHigh
Tonguec-5Suprabasal keratinocytesSquamous epithelial cells1069YesHigh
Tonguec-6T-cellsBlood & immune cells1052YesMedium
Tonguec-7Basal keratinocytesSquamous epithelial cells946YesHigh
Tonguec-8Basal keratinocytesSquamous epithelial cells714YesHigh
Tonguec-9Basal keratinocytesSquamous epithelial cells698YesHigh
Tonguec-10Basal keratinocytesSquamous epithelial cells676YesHigh
Tonguec-11Basal keratinocytesSquamous epithelial cells633YesHigh
Tonguec-12MacrophagesBlood & immune cells480YesHigh
Tonguec-13Endothelial cellsEndothelial cells451YesHigh
Tonguec-14T-cellsBlood & immune cells416YesMedium
Tonguec-15Smooth muscle cellsMuscle cells359YesHigh
Tonguec-16Serous glandular cellsGlandular epithelial cells325YesHigh
Tonguec-17Suprabasal keratinocytesSquamous epithelial cells311YesHigh
Tonguec-18Endothelial cellsEndothelial cells273YesMedium
Tonguec-19Basal keratinocytesSquamous epithelial cells167YesHigh
Tonguec-20GranulocytesBlood & immune cells64YesMedium
Vascularc-0FibroblastsMesenchymal cells1225YesHigh
Vascularc-1MacrophagesBlood & immune cells913YesHigh
Vascularc-2Endothelial cellsEndothelial cells899YesHigh
Vascularc-3FibroblastsMesenchymal cells823YesHigh
Vascularc-4Smooth muscle cellsMuscle cells801YesHigh
Vascularc-5FibroblastsMesenchymal cells564YesMedium
Vascularc-6Smooth muscle cellsMuscle cells556YesHigh
Vascularc-7FibroblastsMesenchymal cells427YesHigh
Vascularc-8Smooth muscle cellsMuscle cells356YesHigh
Vascularc-9FibroblastsMesenchymal cells355YesHigh
Vascularc-10T-cellsBlood & immune cells330YesMedium
Vascularc-11FibroblastsMesenchymal cells282YesMedium
Vascularc-12MacrophagesBlood & immune cells281YesHigh
Vascularc-13Smooth muscle cellsMuscle cells261YesHigh
Vascularc-14Smooth muscle cellsMuscle cells243YesMedium
Vascularc-15Endothelial cellsEndothelial cells237YesMedium
Vascularc-16Endothelial cellsEndothelial cells204YesHigh
Vascularc-17Smooth muscle cellsMuscle cells192YesHigh
Vascularc-18Schwann cellsGlial cells175YesHigh
Vascularc-19Endothelial cellsEndothelial cells48YesHigh
Download: rna_single_cell_clusters.tsv.zip | 557 lines