MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.2 nTPM
HPA Brain:1.1 nTPM
GTEx:0.2 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.0
2219 Male, age 76, both hemispheres 3.3
1830 Male, age 51, unknown 1.3
1827 Male, age 72, unknown 1.0
2666 Male, age 74, left hemisphere 0.9
2828 Female, age 72, unknown 0.9
2411 Female, age 72, unknown 0.7
2586 Male, age 75, left hemisphere 0.7
1870 Female, age 42, unknown 0.6
1833 Male, age 53, unknown 0.4
2019 Male, age 18, unknown 0.4
Dorsal raphe nucleus
nTPM: 1.0
1828 Male, age 53, unknown 1.6
2047 Male, age 72, unknown 1.4
2016 Female, age 72, unknown 0.7
2298 Female, age 72, unknown 0.6
2750 Male, age 76, both hemispheres 0.6
Inferior colliculus
nTPM: 1.0
2097 Female, age 72, unknown 1.2
2849 Male, age 72, unknown 1.1
1890 Male, age 53, unknown 1.0
1848 Female, age 42, unknown 0.7
Median raphe nucleus
nTPM: 1.1
2220 Male, age 76, midline 1.1
Periaquaductal grey, anterior
nTPM: 0.8
1947 Male, age 18, unknown 1.2
2502 Female, age 75, unknown 1.0
1795 Male, age 51, unknown 0.3
Periaquaductal grey, dorsal
nTPM: 1.0
2464 Female, age 72, unknown 1.4
2850 Male, age 76, both hemispheres 1.1
1840 Male, age 53, unknown 0.9
1831 Male, age 72, unknown 0.6
Periaquaductal grey, lateral
nTPM: 0.5
2053 Male, age 18, unknown 0.9
2140 Male, age 76, both hemispheres 0.4
2272 Male, age 74, both hemispheres 0.2
Pretectal area
nTPM: 0.9
2007 Male, age 72, unknown 1.6
2316 Male, age 76, right hemisphere 1.3
1816 Male, age 51, unknown 1.2
1817 Female, age 42, unknown 1.2
2224 Female, age 72, unknown 0.9
1815 Male, age 53, unknown 0.8
1944 Female, age 72, unknown 0.7
2407 Male, age 75, both hemispheres 0.7
2825 Male, age 18, unknown 0.6
2273 Male, age 74, both hemispheres 0.5
2667 Female, age 75, unknown 0.5
Red nucleus
nTPM: 0.9
2584 Male, age 75, left hemisphere 1.5
2785 Male, age 18, unknown 1.3
1821 Female, age 72, unknown 1.1
2227 Male, age 72, unknown 1.0
2503 Female, age 72, unknown 0.9
1865 Male, age 51, unknown 0.7
1954 Female, age 42, unknown 0.7
2725 Female, age 75, unknown 0.7
2769 Male, age 72, unknown 0.7
1904 Male, age 53, unknown 0.6
2823 Male, age 76, right hemisphere 0.6
2588 Male, age 74, left hemisphere 0.5
Substantia nigra
nTPM: 0.6
2665 Male, age 74, both hemispheres 1.3
1941 Male, age 53, unknown 0.9
1916 Female, age 42, unknown 0.8
2590 Female, age 75, unknown 0.7
1851 Male, age 51, unknown 0.5
2241 Male, age 72, unknown 0.5
2699 Male, age 18, unknown 0.4
1889 Female, age 72, unknown 0.3
2583 Male, age 75, right hemisphere 0.2
2409 Female, age 72, unknown 0.1
Superior colliculus
nTPM: 0.7
2664 Male, age 75, both hemispheres 1.6
2087 Female, age 72, unknown 1.0
1796 Male, age 53, unknown 0.8
1839 Male, age 51, unknown 0.8
2668 Female, age 75, unknown 0.8
1895 Male, age 76, right hemisphere 0.6
2261 Male, age 18, unknown 0.5
2587 Male, age 74, left hemisphere 0.5
1913 Female, age 42, unknown 0.4
1995 Male, age 72, unknown 0.2
Ventral tegmental area
nTPM: 0.4
2223 Female, age 72, unknown 0.9
1942 Male, age 51, unknown 0.4
2021 Male, age 53, unknown 0.4
2218 Male, age 76, both hemispheres 0.4
2410 Female, age 72, unknown 0.3
1915 Female, age 42, unknown 0.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.2
Samples: 139

Max nTPM: 2.8
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 2.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 0.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 0.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 0.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 0.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 0.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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