MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.2 nTPM
HPA Brain:89.1 nTPM
GTEx:58.2 nTPM
FANTOM5:39.2 Scaled Tags Per Million
Pig:53.7 nTPM
Mouse:25.3 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.5
2586 Male, age 75, left hemisphere 141.6
2019 Male, age 18, unknown 93.9
2666 Male, age 74, left hemisphere 93.0
1827 Male, age 72, unknown 85.7
2828 Female, age 72, unknown 82.2
1833 Male, age 53, unknown 78.8
2411 Female, age 72, unknown 78.7
1830 Male, age 51, unknown 77.7
1870 Female, age 42, unknown 74.8
2219 Male, age 76, both hemispheres 68.3
Dorsal raphe nucleus
nTPM: 72.1
2047 Male, age 72, unknown 77.0
1828 Male, age 53, unknown 76.9
2750 Male, age 76, both hemispheres 76.1
2298 Female, age 72, unknown 65.4
2016 Female, age 72, unknown 65.1
Inferior colliculus
nTPM: 71.7
2849 Male, age 72, unknown 76.2
1848 Female, age 42, unknown 74.0
1890 Male, age 53, unknown 72.3
2097 Female, age 72, unknown 64.3
Median raphe nucleus
nTPM: 56.5
2220 Male, age 76, midline 56.5
Periaquaductal grey, anterior
nTPM: 83.2
1795 Male, age 51, unknown 85.3
2502 Female, age 75, unknown 83.8
1947 Male, age 18, unknown 80.5
Periaquaductal grey, dorsal
nTPM: 67.2
2464 Female, age 72, unknown 70.8
1831 Male, age 72, unknown 69.9
2850 Male, age 76, both hemispheres 66.3
1840 Male, age 53, unknown 61.6
Periaquaductal grey, lateral
nTPM: 67.8
2053 Male, age 18, unknown 70.8
2140 Male, age 76, both hemispheres 67.0
2272 Male, age 74, both hemispheres 65.7
Pretectal area
nTPM: 79.9
2007 Male, age 72, unknown 94.7
1817 Female, age 42, unknown 90.9
1815 Male, age 53, unknown 89.0
1816 Male, age 51, unknown 87.5
2667 Female, age 75, unknown 85.7
2407 Male, age 75, both hemispheres 84.9
1944 Female, age 72, unknown 80.9
2316 Male, age 76, right hemisphere 73.8
2825 Male, age 18, unknown 71.6
2224 Female, age 72, unknown 60.7
2273 Male, age 74, both hemispheres 58.9
Red nucleus
nTPM: 89.1
2588 Male, age 74, left hemisphere 101.9
2823 Male, age 76, right hemisphere 98.8
2584 Male, age 75, left hemisphere 97.3
2769 Male, age 72, unknown 91.0
2785 Male, age 18, unknown 90.2
1865 Male, age 51, unknown 88.5
1904 Male, age 53, unknown 87.8
2227 Male, age 72, unknown 85.6
2725 Female, age 75, unknown 84.8
1821 Female, age 72, unknown 83.2
2503 Female, age 72, unknown 82.7
1954 Female, age 42, unknown 77.3
Substantia nigra
nTPM: 85.1
2583 Male, age 75, right hemisphere 102.5
1916 Female, age 42, unknown 98.7
2665 Male, age 74, both hemispheres 97.4
1851 Male, age 51, unknown 92.9
1941 Male, age 53, unknown 89.2
2699 Male, age 18, unknown 85.6
2590 Female, age 75, unknown 78.6
1889 Female, age 72, unknown 75.7
2409 Female, age 72, unknown 68.6
2241 Male, age 72, unknown 61.8
Superior colliculus
nTPM: 81.3
2664 Male, age 75, both hemispheres 101.5
1895 Male, age 76, right hemisphere 84.2
2668 Female, age 75, unknown 83.0
1796 Male, age 53, unknown 81.5
2087 Female, age 72, unknown 80.4
1913 Female, age 42, unknown 79.0
1839 Male, age 51, unknown 78.6
1995 Male, age 72, unknown 78.1
2261 Male, age 18, unknown 78.0
2587 Male, age 74, left hemisphere 68.4
Ventral tegmental area
nTPM: 76.5
2410 Female, age 72, unknown 87.1
1915 Female, age 42, unknown 79.2
2223 Female, age 72, unknown 77.5
2218 Male, age 76, both hemispheres 75.9
2021 Male, age 53, unknown 70.2
1942 Male, age 51, unknown 69.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.2
Samples: 183

Max nTPM: 129.7
Min nTPM: 25.3
Std nTPM: 15.1
Median nTPM: 57.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 129.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 115.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 111.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 110.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 104.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 99.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 90.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 84.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 83.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 81.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 79.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.2
FF:10158-103A5 76 years, female 39.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.8
Samples: 4

Max nTPM: 54.3
Min nTPM: 44.4
Sample A Female 54.2
Sample B Female 46.4
Sample C Male 54.3
Sample D Male 44.4
Midbrain
nTPM: 50.7
Samples: 4

Max nTPM: 62.3
Min nTPM: 42.5
Sample A Female 42.5
Sample B Female 43.2
Sample C Male 62.3
Sample D Male 54.8
Periaqueductal gray
nTPM: 42.8
Samples: 3

Max nTPM: 48.9
Min nTPM: 39.0
Sample B Female 40.6
Sample C Male 48.9
Sample D Male 39.0
Superior colliculi
nTPM: 53.7
Samples: 4

Max nTPM: 57.9
Min nTPM: 49.1
Sample A Female 53.4
Sample B Female 49.1
Sample C Male 57.9
Sample D Male 54.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 30.3
Min nTPM: 21.8
Sample A Male 30.3
Sample B Male 24.5
Sample C Female 21.8
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
67815539 Antisense, RP_040920_01_G09, Mouse strain C57BL/6J (56 days, male) 0.5

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