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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.7
nTPM
Monaco:
18.4
nTPM
Schmiedel:
19.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.7
HPA sample
nTPM
gdT-cell nTPM: 9.3
Samples: 6
Max nTPM: 14.6
Min nTPM: 2.9
P10809_1007
10.7
P10809_1022
14.6
P10809_1041
6.7
P10809_1060
2.9
P10809_1077
12.9
P10809_1098
8.2
MAIT T-cell nTPM: 7.7
Samples: 6
Max nTPM: 14.3
Min nTPM: 3.2
P10809_1006
6.4
P10809_1024
14.3
P10809_1043
10.8
P10809_1062
4.4
P10809_1083
7.2
P10809_1097
3.2
Memory CD4 T-cell nTPM: 6.6
Samples: 6
Max nTPM: 9.7
Min nTPM: 1.6
P10809_1014
7.9
P10809_1026
7.9
P10809_1045
9.7
P10809_1064
1.6
P10809_1086
7.7
P10809_1113
5.0
Memory CD8 T-cell nTPM: 9.7
Samples: 5
Max nTPM: 15.7
Min nTPM: 2.8
P10809_1012
10.6
P10809_1027
13.6
P10809_1046
15.7
P10809_1065
2.8
P10809_1111
5.7
Naive CD4 T-cell nTPM: 8.9
Samples: 6
Max nTPM: 13.6
Min nTPM: 5.8
P10809_1015
10.2
P10809_1030
13.6
P10809_1049
9.2
P10809_1068
6.3
P10809_1085
8.1
P10809_1112
5.8
Naive CD8 T-cell nTPM: 8.1
Samples: 6
Max nTPM: 13.0
Min nTPM: 4.5
P10809_1016
7.0
P10809_1031
13.0
P10809_1050
7.5
P10809_1069
4.5
P10809_1087
8.3
P10809_1110
8.0
T-reg nTPM: 9.3
Samples: 6
Max nTPM: 15.4
Min nTPM: 0.4
P10809_1018
6.9
P10809_1037
9.9
P10809_1056
15.4
P10809_1075
0.4
P10809_1094
11.0
P10809_1106
12.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 5.9
Samples: 4
Max nTPM: 10.7
Min nTPM: 3.4
RHH5202_R3573
3.4
RHH5230_R3602
4.9
RHH5259_R3631
10.7
RHH5288_R3660
4.5
Effector memory CD8 T-cell nTPM: 16.6
Samples: 4
Max nTPM: 34.3
Min nTPM: 6.4
RHH5203_R3574
19.1
RHH5231_R3603
6.4
RHH5260_R3632
34.3
RHH5289_R3661
6.4
MAIT T-cell nTPM: 10.0
Samples: 4
Max nTPM: 16.4
Min nTPM: 1.2
RHH5233_R3605
1.2
RHH5205_R3576
14.4
RHH5262_R3634
16.4
RHH5297_R3663
8.1
Memory CD4 T-cell TFH nTPM: 7.9
Samples: 4
Max nTPM: 10.7
Min nTPM: 4.2
RHH5300_R3666
7.8
RHH5236_R3608
4.2
RHH5265_R3637
8.9
RHH5208_R3579
10.7
Memory CD4 T-cell Th1 nTPM: 10.0
Samples: 4
Max nTPM: 19.9
Min nTPM: 1.9
RHH5210_R3581
1.9
RHH5302_R3668
4.0
RHH5238_R3610
14.0
RHH5267_R3639
19.9
Memory CD4 T-cell Th1/Th17 nTPM: 11.7
Samples: 4
Max nTPM: 18.3
Min nTPM: 3.0
RHH5303_R3669
3.0
RHH5211_R3582
18.3
RHH5239_R3611
8.1
RHH5268_R3640
17.4
Memory CD4 T-cell Th17 nTPM: 13.4
Samples: 4
Max nTPM: 28.9
Min nTPM: 2.4
RHH5304_R3670
2.4
RHH5212_R3583
28.9
RHH5240_R3612
2.9
RHH5269_R3641
19.5
Memory CD4 T-cell Th2 nTPM: 11.8
Samples: 4
Max nTPM: 22.6
Min nTPM: 4.5
RHH5305_R3671
5.3
RHH5213_R3584
14.9
RHH5241_R3613
4.5
RHH5270_R3642
22.6
Naive CD4 T-cell nTPM: 11.4
Samples: 4
Max nTPM: 22.8
Min nTPM: 4.0
RHH5306_R3672
7.3
RHH5214_R3585
22.8
RHH5242_R3614
4.0
RHH5271_R3643
11.5
Naive CD8 T-cell nTPM: 5.6
Samples: 4
Max nTPM: 8.7
Min nTPM: 0.0
RHH5201_R3572
0.0
RHH5229_R3601
5.7
RHH5258_R3630
8.0
RHH5287_R3659
8.7
Non-Vd2 gdTCR nTPM: 18.4
Samples: 4
Max nTPM: 24.1
Min nTPM: 11.1
RHH5235_R3607
24.1
RHH5264_R3636
14.4
RHH5207_R3578
23.9
RHH5299_R3665
11.1
T-reg nTPM: 12.2
Samples: 4
Max nTPM: 20.4
Min nTPM: 4.5
RHH5301_R3667
7.8
RHH5237_R3609
4.5
RHH5266_R3638
16.1
RHH5209_R3580
20.4
Terminal effector memory CD4 T-cell nTPM: 6.6
Samples: 2
Max nTPM: 8.6
Min nTPM: 4.6
RHH5243_R3615
8.6
RHH5272_R3644
4.6
Terminal effector memory CD8 T-cell nTPM: 10.9
Samples: 4
Max nTPM: 14.7
Min nTPM: 7.3
RHH5232_R3604
13.2
RHH5204_R3575
14.7
RHH5261_R3633
7.3
RHH5296_R3662
8.3
Vd2 gdTCR nTPM: 12.3
Samples: 4
Max nTPM: 18.9
Min nTPM: 4.2
RHH5234_R3606
4.2
RHH5206_R3577
18.9
RHH5263_R3635
17.0
RHH5298_R3664
8.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
