MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:69.6 nTPM
GTEx:21.1 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:70.2 nTPM
Mouse:64.1 nTPM
Allen mouse:13.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.0
1827 Male, age 72, unknown 63.3
1833 Male, age 53, unknown 61.3
1870 Female, age 42, unknown 60.6
2411 Female, age 72, unknown 59.7
2666 Male, age 74, left hemisphere 59.3
1830 Male, age 51, unknown 57.8
2019 Male, age 18, unknown 57.3
2828 Female, age 72, unknown 56.9
2219 Male, age 76, both hemispheres 54.0
2586 Male, age 75, left hemisphere 49.3
Dorsal raphe nucleus
nTPM: 60.8
2047 Male, age 72, unknown 63.3
2750 Male, age 76, both hemispheres 61.5
2016 Female, age 72, unknown 61.1
2298 Female, age 72, unknown 59.9
1828 Male, age 53, unknown 58.4
Inferior colliculus
nTPM: 64.3
2097 Female, age 72, unknown 70.2
1848 Female, age 42, unknown 64.9
2849 Male, age 72, unknown 64.0
1890 Male, age 53, unknown 58.2
Median raphe nucleus
nTPM: 66.9
2220 Male, age 76, midline 66.9
Periaquaductal grey, anterior
nTPM: 57.0
1947 Male, age 18, unknown 65.9
1795 Male, age 51, unknown 54.6
2502 Female, age 75, unknown 50.5
Periaquaductal grey, dorsal
nTPM: 69.6
2850 Male, age 76, both hemispheres 82.6
1831 Male, age 72, unknown 66.3
1840 Male, age 53, unknown 66.3
2464 Female, age 72, unknown 63.3
Periaquaductal grey, lateral
nTPM: 64.6
2140 Male, age 76, both hemispheres 71.8
2053 Male, age 18, unknown 62.1
2272 Male, age 74, both hemispheres 60.0
Pretectal area
nTPM: 60.5
1944 Female, age 72, unknown 64.3
2667 Female, age 75, unknown 63.9
1817 Female, age 42, unknown 63.4
1816 Male, age 51, unknown 63.0
2224 Female, age 72, unknown 61.9
1815 Male, age 53, unknown 60.9
2825 Male, age 18, unknown 60.9
2007 Male, age 72, unknown 59.8
2316 Male, age 76, right hemisphere 59.1
2273 Male, age 74, both hemispheres 57.4
2407 Male, age 75, both hemispheres 51.0
Red nucleus
nTPM: 56.8
1954 Female, age 42, unknown 66.0
1865 Male, age 51, unknown 62.2
1821 Female, age 72, unknown 61.4
2823 Male, age 76, right hemisphere 61.2
2725 Female, age 75, unknown 59.7
1904 Male, age 53, unknown 57.3
2769 Male, age 72, unknown 56.4
2785 Male, age 18, unknown 54.2
2503 Female, age 72, unknown 52.7
2584 Male, age 75, left hemisphere 52.0
2227 Male, age 72, unknown 50.2
2588 Male, age 74, left hemisphere 47.8
Substantia nigra
nTPM: 58.8
2409 Female, age 72, unknown 65.5
1889 Female, age 72, unknown 62.5
2241 Male, age 72, unknown 62.2
1916 Female, age 42, unknown 60.9
2590 Female, age 75, unknown 59.9
1941 Male, age 53, unknown 59.8
2583 Male, age 75, right hemisphere 59.7
2699 Male, age 18, unknown 57.0
1851 Male, age 51, unknown 55.5
2665 Male, age 74, both hemispheres 45.3
Superior colliculus
nTPM: 57.8
1895 Male, age 76, right hemisphere 65.0
2087 Female, age 72, unknown 63.2
1796 Male, age 53, unknown 61.0
1839 Male, age 51, unknown 60.9
2587 Male, age 74, left hemisphere 57.5
1995 Male, age 72, unknown 56.8
2668 Female, age 75, unknown 56.5
1913 Female, age 42, unknown 56.3
2261 Male, age 18, unknown 55.1
2664 Male, age 75, both hemispheres 45.8
Ventral tegmental area
nTPM: 60.0
2218 Male, age 76, both hemispheres 62.8
2410 Female, age 72, unknown 61.6
1915 Female, age 42, unknown 61.4
2021 Male, age 53, unknown 61.2
2223 Female, age 72, unknown 58.7
1942 Male, age 51, unknown 54.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 183

Max nTPM: 48.5
Min nTPM: 10.3
Std nTPM: 5.2
Median nTPM: 20.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 42.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 39.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 33.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 32.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 32.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 31.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 30.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 30.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 29.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 28.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.7
FF:10158-103A5 76 years, female 103.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 72.4
Min nTPM: 52.9
Sample A Female 72.4
Sample B Female 59.6
Sample C Male 59.8
Sample D Male 52.9
Midbrain
nTPM: 70.2
Samples: 4

Max nTPM: 80.3
Min nTPM: 64.3
Sample A Female 80.3
Sample B Female 66.9
Sample C Male 69.4
Sample D Male 64.3
Periaqueductal gray
nTPM: 58.1
Samples: 3

Max nTPM: 61.9
Min nTPM: 54.5
Sample B Female 54.5
Sample C Male 58.0
Sample D Male 61.9
Superior colliculi
nTPM: 67.2
Samples: 4

Max nTPM: 70.8
Min nTPM: 64.1
Sample A Female 69.0
Sample B Female 64.1
Sample C Male 70.8
Sample D Male 64.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 72.6
Min nTPM: 57.2
Sample A Male 57.2
Sample B Male 62.0
Sample C Female 72.6
Sample D Female 64.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
69059940 Antisense, RP_050317_04_E12, Mouse strain C57BL/6J (56 days, male) 13.0

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