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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:64.9 nTPM
HPA Brain:178.2 nTPM
GTEx:64.9 nTPM
FANTOM5:40.5 Scaled Tags Per Million
Pig:504.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 147.8
2194 Female, age 79, both hemispheres 185.2
1981 Female, age 72, midline 182.2
2565 Male, age 75, midline 136.7
2816 Male, age 47, midline 122.8
2048 Male, age 55, midline 112.0
Cervical spinal cord, dorsal horn
nTPM: 178.2
2721 Male, age 90, both hemispheres 247.5
2173 Female, age 72, unknown 221.5
2297 Male, age 75, both hemispheres 190.8
2069 Male, age 47, both hemispheres 173.7
1877 Male, age 55, unknown 146.2
2296 Male, age 66, both hemispheres 89.4
Cervical spinal cord, ventral horn
nTPM: 157.6
2068 Male, age 55, unknown 203.7
2820 Female, age 79, both hemispheres 190.4
2480 Male, age 75, both hemispheres 151.7
2809 Male, age 90, both hemispheres 137.2
2098 Female, age 72, unknown 134.4
2295 Male, age 66, both hemispheres 128.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 64.9
Samples: 204

Max nTPM: 391.6
Min nTPM: 8.6
Std nTPM: 60.6
Median nTPM: 44.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 391.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 315.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 298.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 286.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 284.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 280.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 248.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 221.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 213.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 186.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 185.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 177.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 167.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 167.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 165.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 163.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 150.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 147.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 140.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 134.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 132.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 131.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 131.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 127.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 121.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 110.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 106.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 104.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 103.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 102.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 97.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 94.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 93.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 93.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 92.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 91.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 91.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 88.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 86.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 85.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 85.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 84.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 79.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 78.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 74.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 73.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 73.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 73.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 73.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 73.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 72.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 72.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 71.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 71.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 71.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 70.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 70.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 70.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 69.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 69.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 68.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 67.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 67.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 66.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 65.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 64.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 62.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 62.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 62.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 62.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 61.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 59.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 58.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 58.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 58.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 57.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 56.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 56.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 55.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 51.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 51.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 50.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 50.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 50.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 49.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 49.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 48.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 47.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 47.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 46.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 46.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 45.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 45.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 45.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 44.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 44.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 44.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 44.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 44.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 43.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 43.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 43.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 43.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 43.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 42.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 40.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 40.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 40.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 40.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 40.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 38.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 38.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 38.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 38.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 37.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 37.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 37.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 37.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 37.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 37.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 36.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 36.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 36.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 36.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 35.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 35.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 33.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 33.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 33.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 32.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 32.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 32.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 32.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 31.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 31.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 31.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 31.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 31.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 31.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 30.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 29.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 29.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 29.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 28.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 28.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 28.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 28.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 28.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 27.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 27.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 26.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 26.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 26.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 26.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 26.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 26.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 25.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 25.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 25.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 25.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 25.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 25.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 25.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 24.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 23.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 23.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 23.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 23.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 23.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 23.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 23.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 23.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 23.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 22.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 21.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 21.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 21.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 21.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 20.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 20.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 19.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 19.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 19.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 19.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 19.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 19.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 19.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 19.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 18.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 18.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 17.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 17.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 16.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 16.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 16.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 14.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 13.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 13.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 9.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 8.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 40.5
FF:10181-103D1 60 years, female 47.6
FF:10159-103A6 76 years, female 33.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

504.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 154.3
Samples: 4

Max nTPM: 267.2
Min nTPM: 60.6
Sample A Female 267.2
Sample B Female 82.0
Sample C Male 60.6
Sample D Male 207.4
Ventral spinal cord
nTPM: 504.8
Samples: 4

Max nTPM: 667.2
Min nTPM: 242.2
Sample A Female 620.6
Sample B Female 667.2
Sample C Male 489.0
Sample D Male 242.2

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