MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.6 nTPM
HPA Brain:35.1 nTPM
GTEx:54.6 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:37.8 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2019 Male, age 18, unknown 36.0
1870 Female, age 42, unknown 34.6
1827 Male, age 72, unknown 34.0
2666 Male, age 74, left hemisphere 33.8
2828 Female, age 72, unknown 32.8
1833 Male, age 53, unknown 32.5
2411 Female, age 72, unknown 32.3
2219 Male, age 76, both hemispheres 30.8
1830 Male, age 51, unknown 29.7
2586 Male, age 75, left hemisphere 28.2
Dorsal raphe nucleus
nTPM: 32.4
2298 Female, age 72, unknown 35.7
2016 Female, age 72, unknown 34.0
2750 Male, age 76, both hemispheres 32.1
1828 Male, age 53, unknown 31.5
2047 Male, age 72, unknown 28.6
Inferior colliculus
nTPM: 32.1
2849 Male, age 72, unknown 34.7
1848 Female, age 42, unknown 33.9
2097 Female, age 72, unknown 32.6
1890 Male, age 53, unknown 27.2
Median raphe nucleus
nTPM: 32.0
2220 Male, age 76, midline 32.0
Periaquaductal grey, anterior
nTPM: 34.3
2502 Female, age 75, unknown 37.8
1947 Male, age 18, unknown 33.6
1795 Male, age 51, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 30.4
2850 Male, age 76, both hemispheres 34.9
1840 Male, age 53, unknown 32.9
2464 Female, age 72, unknown 27.1
1831 Male, age 72, unknown 26.8
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 33.7
2053 Male, age 18, unknown 30.4
2140 Male, age 76, both hemispheres 29.4
Pretectal area
nTPM: 34.1
2007 Male, age 72, unknown 40.3
1817 Female, age 42, unknown 38.1
1944 Female, age 72, unknown 36.8
1816 Male, age 51, unknown 36.3
1815 Male, age 53, unknown 35.6
2224 Female, age 72, unknown 33.8
2273 Male, age 74, both hemispheres 31.6
2825 Male, age 18, unknown 31.5
2316 Male, age 76, right hemisphere 31.0
2667 Female, age 75, unknown 30.8
2407 Male, age 75, both hemispheres 29.5
Red nucleus
nTPM: 35.1
1865 Male, age 51, unknown 39.2
1821 Female, age 72, unknown 37.6
2785 Male, age 18, unknown 37.5
2503 Female, age 72, unknown 37.4
1954 Female, age 42, unknown 36.4
1904 Male, age 53, unknown 36.3
2725 Female, age 75, unknown 36.0
2227 Male, age 72, unknown 35.9
2769 Male, age 72, unknown 33.4
2823 Male, age 76, right hemisphere 31.8
2588 Male, age 74, left hemisphere 30.1
2584 Male, age 75, left hemisphere 29.8
Substantia nigra
nTPM: 32.7
1889 Female, age 72, unknown 38.7
2665 Male, age 74, both hemispheres 38.0
1916 Female, age 42, unknown 35.0
1851 Male, age 51, unknown 34.5
2583 Male, age 75, right hemisphere 33.2
2699 Male, age 18, unknown 32.1
1941 Male, age 53, unknown 31.1
2241 Male, age 72, unknown 30.3
2590 Female, age 75, unknown 29.2
2409 Female, age 72, unknown 24.5
Superior colliculus
nTPM: 31.9
1895 Male, age 76, right hemisphere 37.0
2668 Female, age 75, unknown 34.3
1839 Male, age 51, unknown 34.1
1796 Male, age 53, unknown 33.6
1995 Male, age 72, unknown 32.6
1913 Female, age 42, unknown 31.7
2587 Male, age 74, left hemisphere 31.7
2087 Female, age 72, unknown 31.4
2261 Male, age 18, unknown 30.3
2664 Male, age 75, both hemispheres 22.9
Ventral tegmental area
nTPM: 30.9
1915 Female, age 42, unknown 35.2
2410 Female, age 72, unknown 35.1
2021 Male, age 53, unknown 30.7
2223 Female, age 72, unknown 29.3
2218 Male, age 76, both hemispheres 28.9
1942 Male, age 51, unknown 26.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.6
Samples: 183

Max nTPM: 97.0
Min nTPM: 30.0
Std nTPM: 12.3
Median nTPM: 52.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 97.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 95.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 94.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 92.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 90.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 83.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 78.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 77.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 77.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 76.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 74.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.1
FF:10158-103A5 76 years, female 36.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 41.1
Min nTPM: 29.7
Sample A Female 41.1
Sample B Female 34.1
Sample C Male 29.7
Sample D Male 32.6
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 49.0
Min nTPM: 31.4
Sample A Female 49.0
Sample B Female 32.1
Sample C Male 32.6
Sample D Male 31.4
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 32.5
Min nTPM: 28.4
Sample B Female 28.8
Sample C Male 32.5
Sample D Male 28.4
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 45.5
Min nTPM: 32.4
Sample A Female 45.5
Sample B Female 35.8
Sample C Male 36.3
Sample D Male 32.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 40.4
Min nTPM: 34.3
Sample A Male 38.7
Sample B Male 37.6
Sample C Female 34.3
Sample D Female 40.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69134379 Antisense, RP_050321_02_H05, Mouse strain C57BL/6J (56 days, male) 1.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo