MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.8 nTPM
HPA Brain:24.0 nTPM
GTEx:50.8 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:7.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
1870 Female, age 42, unknown 27.2
1830 Male, age 51, unknown 23.1
1833 Male, age 53, unknown 22.6
2411 Female, age 72, unknown 21.9
2828 Female, age 72, unknown 18.8
2019 Male, age 18, unknown 18.1
1827 Male, age 72, unknown 16.6
2666 Male, age 74, left hemisphere 15.9
2219 Male, age 76, both hemispheres 14.6
2586 Male, age 75, left hemisphere 13.8
Dorsal raphe nucleus
nTPM: 20.0
2750 Male, age 76, both hemispheres 26.6
2298 Female, age 72, unknown 22.4
2016 Female, age 72, unknown 18.9
1828 Male, age 53, unknown 18.0
2047 Male, age 72, unknown 14.3
Inferior colliculus
nTPM: 16.0
1848 Female, age 42, unknown 17.4
1890 Male, age 53, unknown 16.1
2849 Male, age 72, unknown 16.0
2097 Female, age 72, unknown 14.7
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Periaquaductal grey, anterior
nTPM: 15.1
2502 Female, age 75, unknown 17.5
1795 Male, age 51, unknown 14.9
1947 Male, age 18, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 14.5
1831 Male, age 72, unknown 17.3
2850 Male, age 76, both hemispheres 15.3
2464 Female, age 72, unknown 13.0
1840 Male, age 53, unknown 12.4
Periaquaductal grey, lateral
nTPM: 16.7
2272 Male, age 74, both hemispheres 19.6
2053 Male, age 18, unknown 15.4
2140 Male, age 76, both hemispheres 15.1
Pretectal area
nTPM: 14.4
2667 Female, age 75, unknown 18.7
2273 Male, age 74, both hemispheres 17.5
2407 Male, age 75, both hemispheres 16.0
2825 Male, age 18, unknown 16.0
2224 Female, age 72, unknown 15.0
2316 Male, age 76, right hemisphere 15.0
1815 Male, age 53, unknown 14.8
1817 Female, age 42, unknown 13.9
2007 Male, age 72, unknown 12.5
1944 Female, age 72, unknown 9.9
1816 Male, age 51, unknown 8.6
Red nucleus
nTPM: 24.0
2503 Female, age 72, unknown 30.2
2227 Male, age 72, unknown 29.0
1865 Male, age 51, unknown 28.8
1904 Male, age 53, unknown 27.9
2769 Male, age 72, unknown 27.8
1821 Female, age 72, unknown 24.0
2823 Male, age 76, right hemisphere 21.9
1954 Female, age 42, unknown 21.7
2785 Male, age 18, unknown 20.7
2588 Male, age 74, left hemisphere 19.9
2725 Female, age 75, unknown 19.5
2584 Male, age 75, left hemisphere 17.0
Substantia nigra
nTPM: 22.3
2699 Male, age 18, unknown 36.3
1916 Female, age 42, unknown 34.0
1851 Male, age 51, unknown 28.4
1889 Female, age 72, unknown 18.9
2590 Female, age 75, unknown 18.5
2409 Female, age 72, unknown 18.3
1941 Male, age 53, unknown 17.9
2241 Male, age 72, unknown 17.3
2665 Male, age 74, both hemispheres 17.3
2583 Male, age 75, right hemisphere 16.4
Superior colliculus
nTPM: 16.9
1913 Female, age 42, unknown 24.9
2587 Male, age 74, left hemisphere 22.3
1995 Male, age 72, unknown 20.6
1796 Male, age 53, unknown 17.8
1895 Male, age 76, right hemisphere 16.0
1839 Male, age 51, unknown 15.6
2668 Female, age 75, unknown 15.0
2664 Male, age 75, both hemispheres 13.3
2261 Male, age 18, unknown 12.6
2087 Female, age 72, unknown 11.4
Ventral tegmental area
nTPM: 23.4
2223 Female, age 72, unknown 29.3
1915 Female, age 42, unknown 24.4
2410 Female, age 72, unknown 22.7
2218 Male, age 76, both hemispheres 22.5
2021 Male, age 53, unknown 21.5
1942 Male, age 51, unknown 19.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 50.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.8
Samples: 183

Max nTPM: 134.1
Min nTPM: 8.1
Std nTPM: 20.1
Median nTPM: 46.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 134.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 118.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 115.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 109.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 104.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 98.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 92.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 92.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 85.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 84.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.7
Samples: 4

Max nTPM: 42.4
Min nTPM: 23.0
Sample A Female 42.4
Sample B Female 25.8
Sample C Male 35.4
Sample D Male 23.0
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 35.5
Min nTPM: 28.5
Sample A Female 35.5
Sample B Female 29.7
Sample C Male 28.5
Sample D Male 32.3
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 31.0
Min nTPM: 23.9
Sample B Female 26.1
Sample C Male 31.0
Sample D Male 23.9
Superior colliculi
nTPM: 36.7
Samples: 4

Max nTPM: 42.1
Min nTPM: 32.6
Sample A Female 42.1
Sample B Female 38.1
Sample C Male 33.8
Sample D Male 32.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.5
Sample A Male 6.6
Sample B Male 7.5
Sample C Female 6.5
Sample D Female 7.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71789757 Antisense, RP_050921_01_H05, Mouse strain C57BL/6J (56 days, male) 0.2

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