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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
856.8
nTPM
FANTOM5:
502.0
Scaled Tags Per Million
Pig:
88.6
nTPM
Allen mouse:
12.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
856.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 767.9
2188
Female, age 91, both hemispheres
951.6
2301
Female, age 85, both hemispheres
888.6
2090
Male, age 80, both hemispheres
808.9
1984
Male, age 76, both hemispheres
422.4
Dorsal cochlear nucleus nTPM: 667.1
2378
Male, age 80, both hemispheres
779.2
2187
Female, age 91, both hemispheres
748.3
2802
Male, age 74, right hemisphere
683.6
2370
Male, age 61, both hemispheres
589.3
2058
Male, age 76, both hemispheres
535.0
Dorsal tegmental nucleus nTPM: 549.9
2083
Male, age 80, both hemispheres
780.8
2326
Male, age 74, both hemispheres
612.6
1936
Male, age 76, left hemisphere
413.0
2358
Male, age 61, both hemispheres
393.4
Dorsolateral tegmental area nTPM: 614.6
2751
Female, age 85, both hemispheres
899.7
2654
Male, age 80, both hemispheres
768.4
2337
Male, age 61, both hemispheres
676.6
2360
Male, age 74, both hemispheres
429.3
2141
Male, age 76, both hemispheres
298.8
Kolliker-Fuse nucleus nTPM: 733.9
2793
Female, age 91, left hemisphere
1158.2
2163
Male, age 80, both hemispheres
612.5
2315
Male, age 76, right hemisphere
430.9
Lateral lemniscal nuclei nTPM: 688.4
2320
Female, age 91, left hemisphere
901.9
2036
Male, age 80, both hemispheres
732.0
2746
Female, age 85, left hemisphere
663.3
2169
Male, age 76, both hemispheres
620.0
2453
Male, age 74, right hemisphere
524.8
Lateral parabrachial nucleus nTPM: 856.8
2792
Male, age 76, both hemispheres
1397.9
2013
Male, age 80, both hemispheres
847.4
2790
Male, age 61, both hemispheres
657.7
2139
Female, age 85, right hemisphere
524.1
Lateral vestibular nucleus nTPM: 644.2
2311
Male, age 80, both hemispheres
740.5
2184
Male, age 76, both hemispheres
547.9
Locus coeruleus nTPM: 331.7
2720
Male, age 74, both hemispheres
440.4
2162
Male, age 80, both hemispheres
432.1
2317
Female, age 72, unknown
341.5
2123
Female, age 91, both hemispheres
311.9
2788
Male, age 74, unknown
308.4
2014
Male, age 55, unknown
277.0
1980
Male, age 76, both hemispheres
210.7
Medial parabrachial nucleus nTPM: 717.4
2170
Female, age 91, both hemispheres
865.7
2463
Female, age 85, right hemisphere
799.1
2854
Male, age 80, both hemispheres
749.4
2156
Male, age 61, both hemispheres
603.9
2786
Male, age 76, both hemispheres
568.9
Medial periolivary nuclei nTPM: 640.0
2081
Male, age 80, both hemispheres
752.0
2458
Female, age 91, both hemispheres
729.7
2791
Male, age 74, right hemisphere
705.5
2063
Male, age 76, both hemispheres
619.6
2171
Female, age 85, both hemispheres
393.2
Motor facial nucleus nTPM: 681.4
2697
Female, age 85, both hemispheres
873.9
2126
Male, age 61, both hemispheres
774.9
2365
Male, age 74, right hemisphere
761.7
2795
Female, age 91, both hemispheres
606.7
2327
Male, age 80, both hemispheres
561.9
2062
Male, age 76, both hemispheres
509.6
Motor trigeminal nucleus nTPM: 619.7
2560
Male, age 74, both hemispheres
729.6
2321
Female, age 91, both hemispheres
676.3
2079
Male, age 80, both hemispheres
593.2
2309
Male, age 76, both hemispheres
564.1
2335
Male, age 61, both hemispheres
535.4
Nuclei of the trapezoid body nTPM: 571.0
2166
Male, age 80, both hemispheres
725.5
2368
Female, age 91, both hemispheres
659.4
2159
Male, age 61, both hemispheres
571.8
1983
Male, age 76, both hemispheres
561.6
2735
Female, age 85, both hemispheres
336.8
Nucleus raphe magnus nTPM: 572.5
2459
Female, age 91, both hemispheres
772.7
2051
Male, age 76, both hemispheres
758.8
2328
Male, age 80, both hemispheres
704.2
2455
Male, age 74, both hemispheres
542.0
2160
Male, age 61, both hemispheres
352.1
2172
Female, age 85, both hemispheres
304.9
Paramedian reticular nucleus nTPM: 631.5
2057
Male, age 80, both hemispheres
676.4
2050
Female, age 85, both hemispheres
667.8
2052
Male, age 76, both hemispheres
666.5
2313
Male, age 61, both hemispheres
515.5
Pedunculopontine tegmental nucleus nTPM: 570.1
2334
Male, age 80, both hemispheres
630.7
2338
Male, age 61, both hemispheres
587.7
1921
Female, age 85, both hemispheres
492.1
Pontine nuclei nTPM: 736.8
2454
Male, age 74, left hemisphere
1055.8
2319
Female, age 91, both hemispheres
970.6
2109
Female, age 72, unknown
805.6
1863
Male, age 55, unknown
731.5
1968
Male, age 76, left hemisphere
672.0
2115
Male, age 80, left hemisphere
671.6
2787
Female, age 85, both hemispheres
524.1
2727
Male, age 61, right hemisphere
462.9
Pontine raphe nucleus nTPM: 465.2
2122
Female, age 85, midline
493.9
2853
Male, age 76, midline
436.6
Posteroventral cochlear nucleus nTPM: 818.9
2135
Female, age 91, both hemispheres
1075.1
2341
Male, age 80, both hemispheres
1038.8
2371
Male, age 61, both hemispheres
759.5
2070
Male, age 76, both hemispheres
730.1
2752
Female, age 85, both hemispheres
490.7
Principal sensory trigeminal nucleus nTPM: 598.8
2367
Female, age 91, left hemisphere
964.5
2008
Male, age 80, left hemisphere
513.7
2324
Male, age 76, both hemispheres
479.7
2158
Male, age 61, both hemispheres
437.5
Reticular pontine nucleus, caudal nTPM: 758.5
2559
Male, age 74, both hemispheres
865.2
2457
Female, age 91, both hemispheres
853.2
2092
Male, age 76, both hemispheres
769.0
2332
Male, age 80, right hemisphere
546.8
Reticular pontine nucleus, oral nTPM: 821.5
2366
Female, age 91, both hemispheres
1071.3
2361
Male, age 74, both hemispheres
892.8
1939
Male, age 80, both hemispheres
774.9
2012
Female, age 85, both hemispheres
705.0
2167
Male, age 76, both hemispheres
663.2
Reticulotegmental nucleus nTPM: 568.3
2322
Female, age 91, both hemispheres
680.7
2333
Male, age 80, both hemispheres
641.5
2452
Male, age 74, both hemispheres
609.4
2325
Male, age 76, both hemispheres
341.5
Spinal trigeminal nucleus, oral nTPM: 554.7
2164
Male, age 80, both hemispheres
649.1
1978
Male, age 76, both hemispheres
572.8
2737
Female, age 85, both hemispheres
442.3
Subcoeruleus area nTPM: 634.5
2369
Female, age 85, left hemisphere
1070.9
1958
Male, age 80, both hemispheres
608.1
2089
Male, age 76, left hemisphere
566.6
2451
Male, age 74, both hemispheres
476.1
2323
Female, age 91, left hemisphere
450.6
Superior olive nTPM: 762.5
2020
Male, age 76, both hemispheres
985.4
2364
Male, age 74, right hemisphere
755.6
2329
Male, age 80, right hemisphere
751.0
2561
Female, age 91, both hemispheres
688.9
1875
Female, age 85, both hemispheres
631.5
Ventral periolivary nuclei nTPM: 659.6
2023
Male, age 76, both hemispheres
1106.0
2165
Male, age 80, both hemispheres
585.3
2794
Female, age 91, left hemisphere
506.4
2130
Female, age 85, both hemispheres
440.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 730.7
2456
Female, age 91, both hemispheres
817.7
1959
Male, age 76, both hemispheres
779.1
2359
Male, age 61, both hemispheres
771.3
2840
Female, age 85, both hemispheres
743.4
2161
Male, age 80, both hemispheres
684.0
2449
Male, age 74, both hemispheres
589.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
88.6
Pig sample
Sample description
nTPM
Pons nTPM: 88.6
Samples: 4
Max nTPM: 126.7
Min nTPM: 60.0
Sample A
Female
79.4
Sample B
Female
60.0
Sample C
Male
88.3
Sample D
Male
126.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
