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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.6
nTPM
HPA Brain:
135.3
nTPM
GTEx:
13.6
nTPM
FANTOM5:
83.8
Scaled Tags Per Million
Pig:
37.2
nTPM
Mouse:
21.0
nTPM
Allen mouse:
6.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
135.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 135.3
2219
Male, age 76, both hemispheres
214.4
1833
Male, age 53, unknown
149.4
1830
Male, age 51, unknown
148.9
2586
Male, age 75, left hemisphere
136.0
2666
Male, age 74, left hemisphere
128.9
2019
Male, age 18, unknown
127.0
1827
Male, age 72, unknown
115.5
2828
Female, age 72, unknown
114.9
1870
Female, age 42, unknown
109.7
2411
Female, age 72, unknown
107.9
Dorsal raphe nucleus nTPM: 109.8
2750
Male, age 76, both hemispheres
135.0
1828
Male, age 53, unknown
111.6
2047
Male, age 72, unknown
107.3
2016
Female, age 72, unknown
106.7
2298
Female, age 72, unknown
88.2
Inferior colliculus nTPM: 107.4
2849
Male, age 72, unknown
136.1
1890
Male, age 53, unknown
108.0
1848
Female, age 42, unknown
103.4
2097
Female, age 72, unknown
82.0
Median raphe nucleus nTPM: 116.2
2220
Male, age 76, midline
116.2
Periaquaductal grey, anterior nTPM: 123.7
1947
Male, age 18, unknown
144.6
2502
Female, age 75, unknown
113.5
1795
Male, age 51, unknown
113.0
Periaquaductal grey, dorsal nTPM: 106.5
2850
Male, age 76, both hemispheres
111.7
2464
Female, age 72, unknown
110.2
1831
Male, age 72, unknown
102.9
1840
Male, age 53, unknown
101.3
Periaquaductal grey, lateral nTPM: 124.2
2272
Male, age 74, both hemispheres
133.2
2140
Male, age 76, both hemispheres
123.3
2053
Male, age 18, unknown
116.2
Pretectal area nTPM: 118.5
2407
Male, age 75, both hemispheres
160.6
2667
Female, age 75, unknown
143.5
2316
Male, age 76, right hemisphere
139.8
2825
Male, age 18, unknown
129.4
2273
Male, age 74, both hemispheres
120.5
2224
Female, age 72, unknown
113.4
1815
Male, age 53, unknown
109.2
2007
Male, age 72, unknown
108.2
1817
Female, age 42, unknown
96.3
1816
Male, age 51, unknown
92.2
1944
Female, age 72, unknown
90.1
Red nucleus nTPM: 133.9
2823
Male, age 76, right hemisphere
171.7
2588
Male, age 74, left hemisphere
163.1
1865
Male, age 51, unknown
143.4
2584
Male, age 75, left hemisphere
142.3
2227
Male, age 72, unknown
132.1
1904
Male, age 53, unknown
132.0
2769
Male, age 72, unknown
129.4
2785
Male, age 18, unknown
129.0
2503
Female, age 72, unknown
126.0
2725
Female, age 75, unknown
122.9
1821
Female, age 72, unknown
108.6
1954
Female, age 42, unknown
105.8
Substantia nigra nTPM: 110.5
2583
Male, age 75, right hemisphere
125.6
1941
Male, age 53, unknown
122.6
2699
Male, age 18, unknown
119.6
2241
Male, age 72, unknown
113.0
2409
Female, age 72, unknown
109.3
1851
Male, age 51, unknown
108.6
2590
Female, age 75, unknown
106.0
1889
Female, age 72, unknown
105.3
2665
Male, age 74, both hemispheres
100.5
1916
Female, age 42, unknown
94.9
Superior colliculus nTPM: 123.0
1895
Male, age 76, right hemisphere
148.6
2664
Male, age 75, both hemispheres
142.2
1913
Female, age 42, unknown
140.9
1839
Male, age 51, unknown
131.0
2587
Male, age 74, left hemisphere
127.2
1995
Male, age 72, unknown
122.7
2668
Female, age 75, unknown
120.0
1796
Male, age 53, unknown
107.1
2261
Male, age 18, unknown
98.2
2087
Female, age 72, unknown
92.0
Ventral tegmental area nTPM: 116.1
2223
Female, age 72, unknown
128.6
2218
Male, age 76, both hemispheres
126.6
1942
Male, age 51, unknown
123.0
2021
Male, age 53, unknown
112.4
2410
Female, age 72, unknown
104.4
1915
Female, age 42, unknown
101.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 13.6
Samples: 139
Max nTPM: 45.4
Min nTPM: 4.1
Std nTPM: 5.5
Median nTPM: 12.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
45.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
29.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
27.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
26.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
25.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
24.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
24.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
22.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
22.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
21.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
21.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
21.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
21.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
20.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
19.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
19.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
18.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
18.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
18.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
17.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
17.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
17.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
16.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
16.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
16.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
16.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
16.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
15.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
15.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
15.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
15.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
15.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
15.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
15.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
15.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
15.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
15.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
14.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
14.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
14.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
14.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
13.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
13.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
13.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
13.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
13.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
13.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
13.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
13.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
13.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
13.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
13.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
13.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
13.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
13.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
13.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
13.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
13.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
12.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
12.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
12.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
12.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
12.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
12.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
12.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
12.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
12.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
12.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
12.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
12.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
12.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
12.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
12.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
12.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
12.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
11.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
11.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
11.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
11.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
10.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
10.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
10.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
10.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
10.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
10.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
10.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
9.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
9.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
9.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
9.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
9.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
9.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
9.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
9.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
9.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
8.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
8.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
8.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
8.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
8.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
8.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
7.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
7.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
7.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
7.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
7.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
7.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
6.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
6.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
6.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
6.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
5.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
4.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 21.0
Samples: 4
Max nTPM: 23.5
Min nTPM: 17.7
Sample A
Male
17.7
Sample B
Male
20.0
Sample C
Female
23.5
Sample D
Female
22.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.