MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.8 nTPM
HPA Brain:32.6 nTPM
GTEx:4.8 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:43.9 nTPM
Allen mouse:14.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.4
2586 Male, age 75, left hemisphere 34.8
1827 Male, age 72, unknown 33.8
2019 Male, age 18, unknown 31.5
2219 Male, age 76, both hemispheres 28.0
2666 Male, age 74, left hemisphere 27.3
2828 Female, age 72, unknown 26.5
2411 Female, age 72, unknown 25.9
1833 Male, age 53, unknown 25.7
1870 Female, age 42, unknown 25.7
1830 Male, age 51, unknown 25.4
Dorsal raphe nucleus
nTPM: 26.9
2298 Female, age 72, unknown 30.6
2047 Male, age 72, unknown 28.8
2750 Male, age 76, both hemispheres 27.1
1828 Male, age 53, unknown 24.9
2016 Female, age 72, unknown 23.1
Inferior colliculus
nTPM: 27.5
2849 Male, age 72, unknown 28.7
2097 Female, age 72, unknown 28.5
1848 Female, age 42, unknown 26.4
1890 Male, age 53, unknown 26.3
Median raphe nucleus
nTPM: 29.7
2220 Male, age 76, midline 29.7
Periaquaductal grey, anterior
nTPM: 28.0
1795 Male, age 51, unknown 30.6
2502 Female, age 75, unknown 27.2
1947 Male, age 18, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 27.2
1840 Male, age 53, unknown 31.4
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 25.8
2850 Male, age 76, both hemispheres 25.4
Periaquaductal grey, lateral
nTPM: 27.8
2053 Male, age 18, unknown 29.4
2140 Male, age 76, both hemispheres 28.4
2272 Male, age 74, both hemispheres 25.7
Pretectal area
nTPM: 32.6
1817 Female, age 42, unknown 39.6
2007 Male, age 72, unknown 39.0
2407 Male, age 75, both hemispheres 37.9
1816 Male, age 51, unknown 36.2
1815 Male, age 53, unknown 35.2
1944 Female, age 72, unknown 33.1
2316 Male, age 76, right hemisphere 30.9
2224 Female, age 72, unknown 29.6
2667 Female, age 75, unknown 26.1
2825 Male, age 18, unknown 25.9
2273 Male, age 74, both hemispheres 25.0
Red nucleus
nTPM: 25.4
2785 Male, age 18, unknown 31.1
2725 Female, age 75, unknown 29.7
2584 Male, age 75, left hemisphere 29.2
2588 Male, age 74, left hemisphere 26.8
2823 Male, age 76, right hemisphere 26.3
1821 Female, age 72, unknown 25.6
2227 Male, age 72, unknown 24.2
1904 Male, age 53, unknown 23.1
2769 Male, age 72, unknown 23.1
1954 Female, age 42, unknown 22.6
1865 Male, age 51, unknown 22.0
2503 Female, age 72, unknown 21.2
Substantia nigra
nTPM: 28.6
2583 Male, age 75, right hemisphere 35.5
1889 Female, age 72, unknown 31.8
2409 Female, age 72, unknown 30.0
1916 Female, age 42, unknown 28.5
2590 Female, age 75, unknown 28.1
1851 Male, age 51, unknown 28.0
1941 Male, age 53, unknown 27.7
2665 Male, age 74, both hemispheres 27.2
2241 Male, age 72, unknown 25.7
2699 Male, age 18, unknown 23.3
Superior colliculus
nTPM: 28.6
2087 Female, age 72, unknown 33.7
2261 Male, age 18, unknown 31.5
2664 Male, age 75, both hemispheres 30.9
2668 Female, age 75, unknown 30.9
1796 Male, age 53, unknown 30.7
1895 Male, age 76, right hemisphere 28.4
1839 Male, age 51, unknown 27.7
2587 Male, age 74, left hemisphere 26.4
1913 Female, age 42, unknown 23.3
1995 Male, age 72, unknown 22.9
Ventral tegmental area
nTPM: 25.7
1942 Male, age 51, unknown 27.5
2410 Female, age 72, unknown 27.0
2021 Male, age 53, unknown 26.0
1915 Female, age 42, unknown 25.5
2218 Male, age 76, both hemispheres 25.4
2223 Female, age 72, unknown 22.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.8
Samples: 139

Max nTPM: 13.7
Min nTPM: 0.2
Std nTPM: 1.9
Median nTPM: 4.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 13.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 10.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 9.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 9.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 9.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 8.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 7.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 7.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 7.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 7.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 7.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.1
FF:10158-103A5 76 years, female 27.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.9
Samples: 4

Max nTPM: 48.1
Min nTPM: 30.5
Sample A Female 31.3
Sample B Female 30.5
Sample C Male 37.5
Sample D Male 48.1
Midbrain
nTPM: 44.8
Samples: 4

Max nTPM: 80.1
Min nTPM: 31.7
Sample A Female 80.1
Sample B Female 32.7
Sample C Male 34.5
Sample D Male 31.7
Periaqueductal gray
nTPM: 31.3
Samples: 3

Max nTPM: 33.2
Min nTPM: 28.5
Sample B Female 28.5
Sample C Male 33.2
Sample D Male 32.1
Superior colliculi
nTPM: 32.6
Samples: 4

Max nTPM: 38.3
Min nTPM: 19.3
Sample A Female 35.1
Sample B Female 19.3
Sample C Male 38.3
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 50.8
Min nTPM: 39.1
Sample A Male 50.8
Sample B Male 40.0
Sample C Female 39.1
Sample D Female 45.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.4
69446316 Antisense, RP_050419_01_D05, Mouse strain C57BL/6J (56 days, male) 17.5
69174529 Antisense, RP_050329_03_A03, Mouse strain C57BL/6J (56 days, male) 11.2

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