BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.9 nTPM
HPA Brain:2.8 nTPM
GTEx:59.9 nTPM
FANTOM5:55.7 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:21.8 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 2.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.5
2288 Male, age 75, left hemisphere 6.0
2290 Female, age 72, unknown 5.2
2846 Female, age 79, unknown 3.2
1781 Male, age 74, unknown 1.6
1854 Male, age 80, left hemisphere 1.6
2289 Male, age 61, right hemisphere 1.2
1857 Female, age 85, left hemisphere 0.8
2481 Female, age 94, left hemisphere 0.8
Globus pallidus, externus
nTPM: 1.8
2646 Male, age 61, right hemisphere 3.8
1996 Male, age 80, right hemisphere 1.6
2772 Female, age 79, unknown 1.4
2395 Male, age 75, both hemispheres 1.3
2567 Female, age 72, unknown 0.9
Globus pallidus, internus
nTPM: 2.8
2483 Female, age 94, right hemisphere 8.2
2287 Male, age 75, right hemisphere 5.3
2111 Female, age 85, right hemisphere 2.1
2037 Male, age 80, right hemisphere 1.6
2778 Female, age 91, both hemispheres 1.5
2566 Female, age 72, unknown 0.7
1818 Male, age 74, unknown 0.0
Nucleus accumbens
nTPM: 1.2
1856 Female, age 91, right hemisphere 3.6
2732 Male, age 80, right hemisphere 1.7
2391 Female, age 94, left hemisphere 1.3
1783 Male, age 74, unknown 1.0
1806 Female, age 85, left hemisphere 1.0
2698 Female, age 72, unknown 0.5
2824 Male, age 61, right hemisphere 0.5
2286 Male, age 75, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 1.9
2569 Male, age 61, both hemispheres 3.3
2484 Female, age 94, left hemisphere 2.6
2393 Male, age 80, right hemisphere 1.6
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 2.4
2029 Male, age 61, right hemisphere 4.2
1812 Female, age 91, both hemispheres 3.7
2775 Male, age 80, right hemisphere 1.6
2195 Female, age 85, both hemispheres 1.2
1979 Male, age 74, unknown 1.1
Putamen
nTPM: 1.8
1829 Male, age 74, unknown 5.0
1937 Female, age 91, right hemisphere 2.3
1838 Male, age 80, right hemisphere 1.6
2489 Female, age 72, unknown 1.6
2466 Female, age 79, unknown 1.0
2647 Male, age 75, left hemisphere 0.9
2482 Female, age 94, left hemisphere 0.1
Septal nuclei
nTPM: 2.0
1960 Male, age 74, unknown 6.5
2031 Female, age 72, unknown 3.5
2199 Male, age 80, right hemisphere 1.6
2059 Female, age 85, both hemispheres 1.0
2629 Female, age 94, right hemisphere 0.7
2394 Male, age 61, left hemisphere 0.5
2009 Female, age 91, both hemispheres 0.1
Stria terminalis, bed nucleus
nTPM: 1.7
1974 Female, age 91, both hemispheres 5.2
2201 Male, age 74, unknown 0.0
2486 Female, age 94, both hemispheres 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 59.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 54.4
Samples: 300

Max nTPM: 101.0
Min nTPM: 20.4
Std nTPM: 14.6
Median nTPM: 53.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 98.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 95.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 94.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 94.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 93.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 92.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 86.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 83.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 83.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 83.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.9
Samples: 285

Max nTPM: 118.0
Min nTPM: 22.5
Std nTPM: 16.2
Median nTPM: 58.8
GTEX-1KD4Q-0011-R6a-SM-F2TAK 40-49 years, male 118.0
GTEX-1JN6P-0011-R6b-SM-F6491 60-69 years, male 112.9
GTEX-1JMQJ-0011-R6b-SM-F3417 50-59 years, male 111.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 108.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 107.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 101.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 98.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 97.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 97.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 96.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 94.9
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Brain - Putamen (basal ganglia)
Average nTPM: 57.8
Samples: 254

Max nTPM: 113.2
Min nTPM: 19.8
Std nTPM: 15.7
Median nTPM: 56.1
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 113.2
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 107.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 102.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 99.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 93.3
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 91.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 90.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 89.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 89.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 87.4
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 86.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.5
FF:10164-103B2 76 years, female 42.5
Nucleus accumbens
Scaled Tags Per Million: 44.6
FF:10037-101F1 23-56 years, mixed 44.6
Putamen
Scaled Tags Per Million: 55.7
FF:10176-103C5 60 years, female 55.7
Globus pallidus
Scaled Tags Per Million: 37.1
FF:10175-103C4 60 years, female 40.8
FF:10161-103A8 76 years, female 33.5

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 24.9
Pig sample Sample description nTPM
Caudate
nTPM: 22.7
Samples: 4

Max nTPM: 26.8
Min nTPM: 18.5
Sample A Female 21.7
Sample B Female 26.8
Sample C Male 23.9
Sample D Male 18.5
Putamen
nTPM: 24.9
Samples: 4

Max nTPM: 27.7
Min nTPM: 19.3
Sample A Female 26.1
Sample B Female 19.3
Sample C Male 26.5
Sample D Male 27.7
Septum
nTPM: 24.7
Samples: 4

Max nTPM: 28.3
Min nTPM: 22.2
Sample A Female 28.3
Sample B Female 22.9
Sample C Male 25.4
Sample D Male 22.2
Ventral pallidum
nTPM: 23.0
Samples: 4

Max nTPM: 28.8
Min nTPM: 20.0
Sample A Female 20.6
Sample B Female 28.8
Sample C Male 20.0
Sample D Male 22.6

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 21.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.9
Samples: 4

Max nTPM: 27.4
Min nTPM: 15.1
Sample A Male 16.6
Sample B Male 24.5
Sample C Female 15.1
Sample D Female 27.4
Septum
nTPM: 19.9
Samples: 4

Max nTPM: 24.5
Min nTPM: 15.9
Sample A Male 19.9
Sample B Male 24.5
Sample C Female 19.4
Sample D Female 15.9
Ventral forebrain
nTPM: 21.8
Samples: 4

Max nTPM: 25.6
Min nTPM: 16.3
Sample A Male 25.6
Sample B Male 20.8
Sample C Female 24.6
Sample D Female 16.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68744928 Antisense, RP_050208_01_H08, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.5
68744928 Antisense, RP_050208_01_H08, Mouse strain C57BL/6J (56 days, male) 0.5

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