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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
183.7
nTPM
HPA Brain:
199.7
nTPM
GTEx:
183.7
nTPM
FANTOM5:
47.8
Scaled Tags Per Million
Pig:
87.5
nTPM
Mouse:
162.8
nTPM
Allen mouse:
11.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA000531
Glial cells
Medium
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
199.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 165.1
2621
Female, age 67, right hemisphere
201.9
1898
Male, age 80, left hemisphere
186.3
2148
Female, age 91, left hemisphere
186.3
1855
Male, age 76, left hemisphere
144.9
2529
Female, age 94, left hemisphere
137.5
1911
Female, age 85, right hemisphere
133.6
Dentate gyrus nTPM: 163.7
1927
Female, age 91, both hemispheres
205.0
2531
Female, age 67, both hemispheres
192.7
2530
Female, age 94, left hemisphere
174.2
2528
Male, age 74, both hemispheres
143.6
2010
Male, age 76, both hemispheres
137.8
2246
Female, age 85, both hemispheres
128.7
Entorhinal gyrus nTPM: 176.4
2613
Female, age 94, left hemisphere
243.9
2764
Male, age 80, right hemisphere
184.9
1938
Female, age 85, left hemisphere
181.5
2686
Male, age 75, right hemisphere
173.7
1787
Male, age 76, left hemisphere
165.8
2117
Female, age 91, right hemisphere
108.8
Hippocampus, CA1 nTPM: 173.5
2749
Male, age 80, left hemisphere
264.8
2527
Male, age 74, both hemispheres
181.2
1873
Female, age 85, both hemispheres
153.5
2082
Female, age 91, right hemisphere
135.2
2045
Male, age 76, both hemispheres
132.6
Hippocampus, CA2 nTPM: 164.6
1963
Male, age 80, left hemisphere
224.8
1892
Male, age 76, both hemispheres
176.8
2437
Female, age 94, left hemisphere
156.0
2113
Female, age 91, right hemisphere
145.8
2249
Male, age 74, both hemispheres
145.5
1940
Female, age 85, left hemisphere
138.9
Hippocampus, CA3 nTPM: 174.2
2137
Male, age 80, left hemisphere
243.3
2861
Female, age 67, both hemispheres
237.1
2620
Female, age 94, left hemisphere
175.2
2436
Male, age 74, both hemispheres
137.3
1867
Male, age 76, both hemispheres
136.0
1891
Female, age 85, both hemispheres
116.3
Parahippocampal cortex nTPM: 170.5
2245
Female, age 91, both hemispheres
204.6
2622
Female, age 67, right hemisphere
190.4
1850
Male, age 80, both hemispheres
185.0
2250
Female, age 67, right hemisphere
172.9
1990
Female, age 91, right hemisphere
172.7
2693
Female, age 94, both hemispheres
171.5
1933
Female, age 85, both hemispheres
171.4
2692
Male, age 74, both hemispheres
169.7
2532
Female, age 72, left hemisphere
145.9
2018
Male, age 76, both hemispheres
120.7
Perirhinal gyrus nTPM: 199.7
1847
Female, age 91, left hemisphere
255.6
2521
Female, age 94, right hemisphere
201.7
1794
Male, age 80, right hemisphere
200.5
1841
Female, age 85, right hemisphere
188.2
2848
Male, age 76, right hemisphere
152.3
Subiculum nTPM: 129.3
2619
Male, age 74, both hemispheres
163.3
1977
Female, age 85, both hemispheres
158.4
1901
Male, age 80, both hemispheres
140.3
2729
Female, age 91, right hemisphere
125.3
2438
Female, age 94, left hemisphere
96.5
2042
Male, age 76, both hemispheres
92.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
183.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 183.7
Samples: 197
Max nTPM: 520.6
Min nTPM: 13.6
Std nTPM: 91.8
Median nTPM: 182.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
520.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
485.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
426.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
400.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
379.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
356.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
345.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
344.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
337.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
333.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
326.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
326.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
326.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
325.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
325.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
315.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
304.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
297.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
296.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
294.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
294.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
292.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
283.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
282.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
277.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
276.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
275.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
273.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
272.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
270.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
266.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
265.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
265.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
262.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
262.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
259.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
256.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
256.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
256.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
254.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
253.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
251.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
250.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
250.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
250.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
250.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
250.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
250.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
249.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
248.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
243.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
242.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
240.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
240.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
238.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
237.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
236.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
232.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
230.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
228.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
228.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
228.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
228.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
227.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
227.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
226.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
218.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
218.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
217.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
216.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
216.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
216.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
214.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
213.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
213.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
212.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
211.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
208.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
207.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
207.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
207.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
206.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
205.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
202.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
201.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
201.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
198.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
196.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
196.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
194.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
194.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
192.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
191.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
189.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
186.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
184.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
184.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
184.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
182.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
182.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
181.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
180.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
179.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
178.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
176.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
176.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
171.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
167.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
166.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
164.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
163.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
163.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
162.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
162.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
161.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
161.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
161.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
160.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
160.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
160.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
159.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
155.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
154.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
153.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
151.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
151.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
148.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
147.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
146.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
143.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
143.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
143.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
142.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
141.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
139.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
139.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
138.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
136.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
135.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
133.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
133.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
128.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
126.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
124.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
123.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
122.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
120.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
119.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
116.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
116.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
115.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
111.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
111.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
108.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
108.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
107.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
105.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
103.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
102.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
100.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
94.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
93.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
91.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
81.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
80.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
80.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
78.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
75.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
69.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
68.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
65.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
63.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
61.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
61.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
58.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
57.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
56.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
55.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
54.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
51.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
51.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
51.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
50.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
50.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
49.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
42.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
38.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
36.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
36.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
35.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
35.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
34.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
33.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
29.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
29.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
17.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
13.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
162.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 162.8
Samples: 4
Max nTPM: 175.8
Min nTPM: 151.5
Sample A
Male
151.5
Sample B
Male
164.0
Sample C
Female
159.7
Sample D
Female
175.8
Hippocampal formation nTPM: 141.9
Samples: 4
Max nTPM: 153.4
Min nTPM: 133.5
Sample A
Male
153.4
Sample B
Male
136.5
Sample C
Female
144.1
Sample D
Female
133.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.