MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.1 nTPM
HPA Brain:33.8 nTPM
GTEx:68.1 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
2666 Male, age 74, left hemisphere 36.2
1870 Female, age 42, unknown 32.2
1827 Male, age 72, unknown 31.0
2828 Female, age 72, unknown 26.4
2219 Male, age 76, both hemispheres 26.1
1830 Male, age 51, unknown 25.9
2411 Female, age 72, unknown 25.8
1833 Male, age 53, unknown 25.3
2586 Male, age 75, left hemisphere 22.3
2019 Male, age 18, unknown 18.9
Dorsal raphe nucleus
nTPM: 25.7
1828 Male, age 53, unknown 27.5
2298 Female, age 72, unknown 26.6
2047 Male, age 72, unknown 26.3
2750 Male, age 76, both hemispheres 24.7
2016 Female, age 72, unknown 23.4
Inferior colliculus
nTPM: 26.8
2849 Male, age 72, unknown 29.8
1890 Male, age 53, unknown 27.5
2097 Female, age 72, unknown 25.1
1848 Female, age 42, unknown 24.9
Median raphe nucleus
nTPM: 32.8
2220 Male, age 76, midline 32.8
Periaquaductal grey, anterior
nTPM: 28.0
1947 Male, age 18, unknown 33.5
1795 Male, age 51, unknown 25.4
2502 Female, age 75, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 29.2
2850 Male, age 76, both hemispheres 35.8
1840 Male, age 53, unknown 30.3
1831 Male, age 72, unknown 28.5
2464 Female, age 72, unknown 22.3
Periaquaductal grey, lateral
nTPM: 27.2
2053 Male, age 18, unknown 29.0
2140 Male, age 76, both hemispheres 28.6
2272 Male, age 74, both hemispheres 24.1
Pretectal area
nTPM: 27.3
1816 Male, age 51, unknown 33.9
1944 Female, age 72, unknown 32.3
2825 Male, age 18, unknown 29.7
1817 Female, age 42, unknown 28.6
1815 Male, age 53, unknown 28.1
2007 Male, age 72, unknown 26.8
2273 Male, age 74, both hemispheres 26.5
2224 Female, age 72, unknown 26.0
2667 Female, age 75, unknown 25.9
2407 Male, age 75, both hemispheres 24.5
2316 Male, age 76, right hemisphere 18.3
Red nucleus
nTPM: 26.9
2725 Female, age 75, unknown 38.3
1821 Female, age 72, unknown 30.0
2503 Female, age 72, unknown 29.9
2823 Male, age 76, right hemisphere 28.4
1865 Male, age 51, unknown 26.6
1904 Male, age 53, unknown 26.6
1954 Female, age 42, unknown 26.5
2588 Male, age 74, left hemisphere 24.0
2227 Male, age 72, unknown 23.6
2785 Male, age 18, unknown 23.3
2584 Male, age 75, left hemisphere 22.6
2769 Male, age 72, unknown 22.5
Substantia nigra
nTPM: 33.8
2409 Female, age 72, unknown 50.4
2241 Male, age 72, unknown 39.3
1916 Female, age 42, unknown 38.9
2699 Male, age 18, unknown 34.7
1851 Male, age 51, unknown 33.6
1941 Male, age 53, unknown 33.4
1889 Female, age 72, unknown 31.6
2665 Male, age 74, both hemispheres 28.3
2590 Female, age 75, unknown 25.5
2583 Male, age 75, right hemisphere 22.3
Superior colliculus
nTPM: 26.0
2587 Male, age 74, left hemisphere 30.6
1895 Male, age 76, right hemisphere 29.0
2261 Male, age 18, unknown 27.9
2087 Female, age 72, unknown 27.0
2668 Female, age 75, unknown 26.7
1796 Male, age 53, unknown 26.2
1913 Female, age 42, unknown 25.8
1839 Male, age 51, unknown 22.9
1995 Male, age 72, unknown 22.1
2664 Male, age 75, both hemispheres 22.1
Ventral tegmental area
nTPM: 28.7
2218 Male, age 76, both hemispheres 32.0
1915 Female, age 42, unknown 31.3
2223 Female, age 72, unknown 29.7
1942 Male, age 51, unknown 28.4
2410 Female, age 72, unknown 26.6
2021 Male, age 53, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.1
Samples: 183

Max nTPM: 118.2
Min nTPM: 23.6
Std nTPM: 16.2
Median nTPM: 67.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 118.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 116.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 104.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 102.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 102.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 99.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 99.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 98.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 98.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 97.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.6
FF:10158-103A5 76 years, female 52.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.1
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.3
Sample A Female 1.7
Sample B Female 0.4
Sample C Male 2.0
Sample D Male 0.3
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.9
Sample C Male 1.1
Sample D Male 0.9
Periaqueductal gray
nTPM: 1.2
Samples: 3

Max nTPM: 1.3
Min nTPM: 1.1
Sample B Female 1.1
Sample C Male 1.1
Sample D Male 1.3
Superior colliculi
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.1
Sample A Female 0.9
Sample B Female 0.1
Sample C Male 0.8
Sample D Male 0.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69116416 Antisense, RP_050317_02_F04, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo