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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
71.5
nTPM
HPA Brain:
44.8
nTPM
GTEx:
71.5
nTPM
FANTOM5:
51.1
Scaled Tags Per Million
Pig:
0.1
nTPM
Mouse:
0.0
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 26.4
2666
Male, age 74, left hemisphere
38.4
1830
Male, age 51, unknown
28.8
1870
Female, age 42, unknown
28.8
2828
Female, age 72, unknown
28.6
1833
Male, age 53, unknown
26.3
2586
Male, age 75, left hemisphere
24.6
2219
Male, age 76, both hemispheres
22.9
1827
Male, age 72, unknown
22.3
2019
Male, age 18, unknown
21.7
2411
Female, age 72, unknown
21.4
Dorsal raphe nucleus nTPM: 26.9
2016
Female, age 72, unknown
31.8
1828
Male, age 53, unknown
31.4
2750
Male, age 76, both hemispheres
26.5
2047
Male, age 72, unknown
23.7
2298
Female, age 72, unknown
20.9
Inferior colliculus nTPM: 24.1
2849
Male, age 72, unknown
32.1
1848
Female, age 42, unknown
24.0
1890
Male, age 53, unknown
22.0
2097
Female, age 72, unknown
18.2
Median raphe nucleus nTPM: 26.9
2220
Male, age 76, midline
26.9
Periaquaductal grey, anterior nTPM: 17.5
1795
Male, age 51, unknown
21.9
1947
Male, age 18, unknown
17.1
2502
Female, age 75, unknown
13.5
Periaquaductal grey, dorsal nTPM: 28.0
2850
Male, age 76, both hemispheres
42.7
1831
Male, age 72, unknown
27.5
2464
Female, age 72, unknown
21.4
1840
Male, age 53, unknown
20.3
Periaquaductal grey, lateral nTPM: 33.4
2140
Male, age 76, both hemispheres
37.5
2272
Male, age 74, both hemispheres
34.8
2053
Male, age 18, unknown
28.0
Pretectal area nTPM: 26.9
2407
Male, age 75, both hemispheres
51.6
2316
Male, age 76, right hemisphere
44.1
2224
Female, age 72, unknown
29.6
2825
Male, age 18, unknown
26.7
1944
Female, age 72, unknown
26.3
1815
Male, age 53, unknown
25.9
2273
Male, age 74, both hemispheres
25.6
1817
Female, age 42, unknown
21.6
2007
Male, age 72, unknown
15.9
2667
Female, age 75, unknown
15.2
1816
Male, age 51, unknown
13.8
Red nucleus nTPM: 27.5
2725
Female, age 75, unknown
34.7
1865
Male, age 51, unknown
34.4
2769
Male, age 72, unknown
32.6
2227
Male, age 72, unknown
32.4
1904
Male, age 53, unknown
30.4
2785
Male, age 18, unknown
27.8
2584
Male, age 75, left hemisphere
27.7
2823
Male, age 76, right hemisphere
27.0
2503
Female, age 72, unknown
24.7
1821
Female, age 72, unknown
23.3
1954
Female, age 42, unknown
23.3
2588
Male, age 74, left hemisphere
11.8
Substantia nigra nTPM: 44.8
2590
Female, age 75, unknown
93.7
2699
Male, age 18, unknown
82.8
1916
Female, age 42, unknown
40.4
1851
Male, age 51, unknown
39.3
2665
Male, age 74, both hemispheres
37.4
2583
Male, age 75, right hemisphere
36.4
2409
Female, age 72, unknown
32.9
2241
Male, age 72, unknown
32.6
1941
Male, age 53, unknown
31.5
1889
Female, age 72, unknown
21.2
Superior colliculus nTPM: 28.6
1913
Female, age 42, unknown
53.9
2587
Male, age 74, left hemisphere
44.9
1995
Male, age 72, unknown
32.4
2664
Male, age 75, both hemispheres
31.9
1839
Male, age 51, unknown
28.6
1796
Male, age 53, unknown
23.2
1895
Male, age 76, right hemisphere
20.9
2668
Female, age 75, unknown
17.9
2087
Female, age 72, unknown
16.6
2261
Male, age 18, unknown
16.3
Ventral tegmental area nTPM: 32.2
2021
Male, age 53, unknown
46.0
1915
Female, age 42, unknown
35.2
2218
Male, age 76, both hemispheres
31.3
1942
Male, age 51, unknown
29.7
2223
Female, age 72, unknown
28.6
2410
Female, age 72, unknown
22.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 71.5
Samples: 139
Max nTPM: 338.7
Min nTPM: 7.3
Std nTPM: 58.1
Median nTPM: 55.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
338.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
282.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
282.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
273.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
252.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
209.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
200.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
193.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
179.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
148.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
142.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
140.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
137.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
135.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
135.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
132.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
128.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
127.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
124.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
123.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
120.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
119.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
108.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
108.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
106.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
104.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
104.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
99.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
99.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
95.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
95.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
94.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
94.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
90.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
89.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
88.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
86.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
84.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
84.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
82.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
81.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
79.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
75.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
75.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
74.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
73.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
73.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
71.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
70.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
70.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
69.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
67.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
67.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
66.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
65.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
65.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
65.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
63.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
62.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
62.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
61.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
61.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
60.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
59.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
59.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
58.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
58.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
56.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
55.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
55.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
55.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
52.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
51.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
51.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
51.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
50.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
50.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
49.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
48.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
48.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
46.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
46.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
46.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
45.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
45.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
45.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
43.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
42.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
41.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
41.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
41.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
40.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
40.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
40.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
38.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
38.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
38.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
37.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
37.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
37.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
36.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
36.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
35.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
35.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
34.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
33.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
33.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
33.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
33.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
32.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
32.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
31.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
30.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
30.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
29.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
29.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
28.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
28.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
26.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
26.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
26.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
26.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
24.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
20.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
20.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
19.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
19.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
19.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
19.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
17.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
14.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
12.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
11.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
11.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
10.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.0
Samples: 4
Max nTPM: 0.1
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
0.1
Sample C
Female
0.0
Sample D
Female
0.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.