MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:15.0 nTPM
GTEx:4.0 nTPM
FANTOM5:12.0 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:3.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.5
2586 Male, age 75, left hemisphere 17.4
1827 Male, age 72, unknown 15.4
2828 Female, age 72, unknown 15.3
2019 Male, age 18, unknown 15.1
2666 Male, age 74, left hemisphere 14.3
2219 Male, age 76, both hemispheres 14.2
2411 Female, age 72, unknown 14.2
1830 Male, age 51, unknown 13.6
1833 Male, age 53, unknown 13.1
1870 Female, age 42, unknown 12.8
Dorsal raphe nucleus
nTPM: 12.7
2047 Male, age 72, unknown 13.1
2298 Female, age 72, unknown 13.1
2750 Male, age 76, both hemispheres 13.1
1828 Male, age 53, unknown 12.1
2016 Female, age 72, unknown 11.9
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 14.3
1890 Male, age 53, unknown 13.9
1848 Female, age 42, unknown 13.0
2849 Male, age 72, unknown 12.5
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Periaquaductal grey, anterior
nTPM: 14.8
1795 Male, age 51, unknown 15.9
2502 Female, age 75, unknown 15.2
1947 Male, age 18, unknown 13.2
Periaquaductal grey, dorsal
nTPM: 12.4
1831 Male, age 72, unknown 13.9
2464 Female, age 72, unknown 13.4
1840 Male, age 53, unknown 12.3
2850 Male, age 76, both hemispheres 9.9
Periaquaductal grey, lateral
nTPM: 12.4
2053 Male, age 18, unknown 13.5
2140 Male, age 76, both hemispheres 11.9
2272 Male, age 74, both hemispheres 11.9
Pretectal area
nTPM: 14.8
2007 Male, age 72, unknown 17.4
1816 Male, age 51, unknown 17.1
2407 Male, age 75, both hemispheres 15.6
1944 Female, age 72, unknown 15.4
1817 Female, age 42, unknown 14.9
1815 Male, age 53, unknown 14.8
2667 Female, age 75, unknown 14.7
2316 Male, age 76, right hemisphere 14.3
2825 Male, age 18, unknown 13.4
2273 Male, age 74, both hemispheres 13.1
2224 Female, age 72, unknown 12.5
Red nucleus
nTPM: 14.0
2584 Male, age 75, left hemisphere 17.0
2823 Male, age 76, right hemisphere 15.7
2588 Male, age 74, left hemisphere 15.1
2785 Male, age 18, unknown 15.0
1904 Male, age 53, unknown 13.8
1865 Male, age 51, unknown 13.7
2725 Female, age 75, unknown 13.7
2769 Male, age 72, unknown 13.6
2503 Female, age 72, unknown 13.2
2227 Male, age 72, unknown 12.8
1954 Female, age 42, unknown 12.7
1821 Female, age 72, unknown 11.8
Substantia nigra
nTPM: 12.4
2583 Male, age 75, right hemisphere 14.5
1889 Female, age 72, unknown 13.5
1941 Male, age 53, unknown 13.1
2590 Female, age 75, unknown 13.0
2409 Female, age 72, unknown 12.9
2665 Male, age 74, both hemispheres 12.8
1851 Male, age 51, unknown 11.8
1916 Female, age 42, unknown 11.1
2241 Male, age 72, unknown 10.8
2699 Male, age 18, unknown 10.8
Superior colliculus
nTPM: 15.0
2664 Male, age 75, both hemispheres 17.5
2261 Male, age 18, unknown 17.1
2087 Female, age 72, unknown 16.6
1796 Male, age 53, unknown 15.4
1913 Female, age 42, unknown 15.1
1895 Male, age 76, right hemisphere 14.1
2668 Female, age 75, unknown 14.1
1995 Male, age 72, unknown 13.9
1839 Male, age 51, unknown 13.6
2587 Male, age 74, left hemisphere 12.4
Ventral tegmental area
nTPM: 12.3
2223 Female, age 72, unknown 12.9
2021 Male, age 53, unknown 12.7
2410 Female, age 72, unknown 12.3
1942 Male, age 51, unknown 12.2
1915 Female, age 42, unknown 11.8
2218 Male, age 76, both hemispheres 11.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.0
Samples: 139

Max nTPM: 7.5
Min nTPM: 1.6
Std nTPM: 1.0
Median nTPM: 3.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 7.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 7.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 6.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 6.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 6.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 5.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 5.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 5.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 5.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.0
FF:10158-103A5 76 years, female 12.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.0
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.0
Sample A Female 6.6
Sample B Female 5.2
Sample C Male 4.3
Sample D Male 4.0
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.0
Sample A Female 6.1
Sample B Female 4.0
Sample C Male 6.6
Sample D Male 6.0
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.5
Min nTPM: 4.4
Sample B Female 4.6
Sample C Male 5.5
Sample D Male 4.4
Superior colliculi
nTPM: 6.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.5
Sample A Female 7.8
Sample B Female 6.3
Sample C Male 4.5
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.5
Min nTPM: 3.2
Sample A Male 3.4
Sample B Male 3.2
Sample C Female 3.2
Sample D Female 3.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68193017 Antisense, RP_041018_01_E03, Mouse strain C57BL/6J (56 days, male) 0.0

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