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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
457.1
nTPM
Monaco:
46.0
nTPM
Schmiedel:
55.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
457.1
HPA sample
nTPM
gdT-cell nTPM: 286.7
Samples: 6
Max nTPM: 360.9
Min nTPM: 196.6
P10809_1007
196.6
P10809_1022
205.6
P10809_1041
360.9
P10809_1060
297.0
P10809_1077
341.2
P10809_1098
318.7
MAIT T-cell nTPM: 264.8
Samples: 6
Max nTPM: 357.7
Min nTPM: 130.0
P10809_1006
130.0
P10809_1024
226.3
P10809_1043
279.2
P10809_1062
280.8
P10809_1083
314.7
P10809_1097
357.7
Memory CD4 T-cell nTPM: 324.4
Samples: 6
Max nTPM: 398.9
Min nTPM: 210.7
P10809_1014
210.7
P10809_1026
339.5
P10809_1045
274.5
P10809_1064
379.8
P10809_1086
398.9
P10809_1113
343.2
Memory CD8 T-cell nTPM: 300.2
Samples: 5
Max nTPM: 383.8
Min nTPM: 182.2
P10809_1012
182.2
P10809_1027
325.7
P10809_1046
292.4
P10809_1065
383.8
P10809_1111
316.7
Naive CD4 T-cell nTPM: 299.8
Samples: 6
Max nTPM: 422.2
Min nTPM: 159.2
P10809_1015
159.2
P10809_1030
312.0
P10809_1049
422.2
P10809_1068
288.9
P10809_1085
303.3
P10809_1112
313.4
Naive CD8 T-cell nTPM: 309.4
Samples: 6
Max nTPM: 414.4
Min nTPM: 193.7
P10809_1016
193.7
P10809_1031
294.8
P10809_1050
303.6
P10809_1069
358.2
P10809_1087
414.4
P10809_1110
291.9
T-reg nTPM: 457.1
Samples: 6
Max nTPM: 638.7
Min nTPM: 255.0
P10809_1018
255.0
P10809_1037
458.5
P10809_1056
638.7
P10809_1075
461.7
P10809_1094
475.0
P10809_1106
453.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.0
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 36.6
Samples: 4
Max nTPM: 50.9
Min nTPM: 21.7
RHH5202_R3573
21.7
RHH5230_R3602
34.1
RHH5259_R3631
50.9
RHH5288_R3660
39.7
Effector memory CD8 T-cell nTPM: 29.9
Samples: 4
Max nTPM: 39.1
Min nTPM: 21.9
RHH5203_R3574
33.7
RHH5231_R3603
21.9
RHH5260_R3632
39.1
RHH5289_R3661
25.0
MAIT T-cell nTPM: 24.8
Samples: 4
Max nTPM: 27.8
Min nTPM: 21.7
RHH5233_R3605
21.7
RHH5205_R3576
27.8
RHH5262_R3634
25.3
RHH5297_R3663
24.4
Memory CD4 T-cell TFH nTPM: 19.7
Samples: 4
Max nTPM: 38.9
Min nTPM: 8.5
RHH5300_R3666
9.4
RHH5236_R3608
38.9
RHH5265_R3637
22.0
RHH5208_R3579
8.5
Memory CD4 T-cell Th1 nTPM: 38.5
Samples: 4
Max nTPM: 55.2
Min nTPM: 30.5
RHH5210_R3581
33.7
RHH5302_R3668
30.5
RHH5238_R3610
55.2
RHH5267_R3639
34.6
Memory CD4 T-cell Th1/Th17 nTPM: 33.8
Samples: 4
Max nTPM: 46.2
Min nTPM: 25.4
RHH5303_R3669
29.6
RHH5211_R3582
25.4
RHH5239_R3611
34.0
RHH5268_R3640
46.2
Memory CD4 T-cell Th17 nTPM: 35.3
Samples: 4
Max nTPM: 54.2
Min nTPM: 13.5
RHH5304_R3670
48.3
RHH5212_R3583
13.5
RHH5240_R3612
54.2
RHH5269_R3641
25.2
Memory CD4 T-cell Th2 nTPM: 22.4
Samples: 4
Max nTPM: 26.8
Min nTPM: 20.4
RHH5305_R3671
20.5
RHH5213_R3584
26.8
RHH5241_R3613
20.4
RHH5270_R3642
21.7
Naive CD4 T-cell nTPM: 37.9
Samples: 4
Max nTPM: 51.8
Min nTPM: 21.6
RHH5306_R3672
50.5
RHH5214_R3585
51.8
RHH5242_R3614
21.6
RHH5271_R3643
27.6
Naive CD8 T-cell nTPM: 23.3
Samples: 4
Max nTPM: 36.4
Min nTPM: 13.2
RHH5201_R3572
36.4
RHH5229_R3601
13.2
RHH5258_R3630
16.5
RHH5287_R3659
26.9
Non-Vd2 gdTCR nTPM: 24.5
Samples: 4
Max nTPM: 39.7
Min nTPM: 13.6
RHH5235_R3607
39.7
RHH5264_R3636
25.1
RHH5207_R3578
13.6
RHH5299_R3665
19.7
T-reg nTPM: 43.7
Samples: 4
Max nTPM: 47.6
Min nTPM: 38.1
RHH5301_R3667
41.6
RHH5237_R3609
38.1
RHH5266_R3638
47.5
RHH5209_R3580
47.6
Terminal effector memory CD4 T-cell nTPM: 33.2
Samples: 2
Max nTPM: 38.7
Min nTPM: 27.7
RHH5243_R3615
38.7
RHH5272_R3644
27.7
Terminal effector memory CD8 T-cell nTPM: 42.6
Samples: 4
Max nTPM: 66.6
Min nTPM: 13.3
RHH5232_R3604
13.3
RHH5204_R3575
66.6
RHH5261_R3633
48.3
RHH5296_R3662
42.1
Vd2 gdTCR nTPM: 46.0
Samples: 4
Max nTPM: 89.2
Min nTPM: 16.7
RHH5234_R3606
16.7
RHH5206_R3577
89.2
RHH5263_R3635
42.3
RHH5298_R3664
35.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
