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  • UBA52
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:860.2 nTPM
HPA Brain:371.5 nTPM
GTEx:860.2 nTPM
FANTOM5:177.9 Scaled Tags Per Million
Pig:1176.3 nTPM
Mouse:361.3 nTPM
Allen mouse:24.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.5
Sample id Sample description nTPM
Amygdala
nTPM: 371.5
2695 Female, age 67, right hemisphere 453.8
2514 Male, age 75, right hemisphere 373.3
2814 Male, age 76, right hemisphere 345.9
1987 Female, age 91, left hemisphere 342.5
2517 Female, age 94, left hemisphere 342.2
Basal amygdala
nTPM: 327.0
2827 Female, age 67, right hemisphere 419.8
2609 Male, age 75, right hemisphere 357.5
2685 Female, age 94, left hemisphere 333.5
2110 Male, age 80, left hemisphere 299.8
2243 Female, age 91, right hemisphere 297.3
1955 Male, age 76, both hemispheres 254.2
Central amygdala
nTPM: 354.5
2826 Female, age 94, left hemisphere 569.0
2515 Male, age 75, right hemisphere 374.2
2239 Male, age 80, left hemisphere 290.6
1905 Male, age 76, both hemispheres 279.9
2701 Female, age 91, right hemisphere 258.8
Corticomedial amygdala
nTPM: 300.0
2428 Male, age 75, right hemisphere 362.9
2535 Female, age 67, right hemisphere 314.8
2829 Male, age 80, left hemisphere 307.3
2242 Female, age 91, right hemisphere 286.8
2429 Female, age 94, left hemisphere 282.2
2240 Male, age 76, both hemispheres 245.9
Lateral amygdala
nTPM: 368.3
2830 Female, age 67, right hemisphere 524.4
2516 Male, age 75, right hemisphere 434.2
2534 Female, age 94, left hemisphere 430.6
2256 Male, age 80, left hemisphere 313.9
2255 Female, age 91, right hemisphere 256.7
1883 Male, age 76, both hemispheres 250.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

860.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 860.2
Samples: 181

Max nTPM: 2066.7
Min nTPM: 451.3
Std nTPM: 281.9
Median nTPM: 804.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2066.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2017.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1903.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1885.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1741.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1639.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1606.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1588.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1551.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1404.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1386.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1316.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1288.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1273.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1237.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1203.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1192.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1168.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1161.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1156.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1125.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1113.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1103.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1102.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1093.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1074.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1072.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1064.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1039.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1034.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1033.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1033.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1020.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1016.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1004.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1001.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 998.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 994.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 984.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 974.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 958.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 952.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 941.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 941.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 940.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 935.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 931.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 929.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 926.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 925.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 925.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 923.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 920.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 920.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 913.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 912.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 904.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 901.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 901.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 895.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 894.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 889.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 881.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 877.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 876.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 875.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 873.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 873.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 868.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 863.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 861.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 856.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 855.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 854.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 853.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 850.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 850.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 845.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 838.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 837.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 829.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 828.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 827.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 826.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 823.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 818.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 818.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 816.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 810.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 807.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 804.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 802.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 801.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 798.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 796.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 795.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 792.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 792.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 777.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 774.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 772.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 772.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 764.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 760.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 758.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 757.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 754.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 751.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 747.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 743.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 741.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 741.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 740.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 738.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 732.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 729.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 723.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 722.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 721.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 717.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 715.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 715.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 712.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 709.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 707.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 707.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 701.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 700.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 694.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 692.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 684.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 682.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 682.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 681.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 680.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 680.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 678.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 676.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 673.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 671.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 667.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 665.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 662.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 658.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 657.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 654.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 653.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 649.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 648.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 647.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 636.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 627.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 626.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 625.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 624.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 622.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 621.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 615.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 614.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 597.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 592.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 591.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 590.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 584.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 583.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 582.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 579.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 572.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 566.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 558.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 556.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 552.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 550.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 547.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 544.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 535.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 525.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 521.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 521.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 487.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 451.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

177.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 177.9
FF:10151-102I7 76 years, female 177.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1176.3
Pig sample Sample description nTPM
Amygdala
nTPM: 1176.3
Samples: 4

Max nTPM: 1609.5
Min nTPM: 740.0
Sample A Female 1609.5
Sample B Female 1237.7
Sample C Male 1118.1
Sample D Male 740.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 361.3
Samples: 4

Max nTPM: 395.3
Min nTPM: 334.0
Sample A Male 334.0
Sample B Male 363.6
Sample C Female 395.3
Sample D Female 352.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.9
69013702 Antisense, RP_050309_02_G10, Mouse strain C57BL/6J (56 days, male) 24.9

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