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UBA52
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  • UBA52
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:861.8 nTPM
HPA:505.8 nTPM
GTEx:861.8 nTPM
FANTOM5:163.4 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041344Antibody HPA049132
Glandular cells MediumHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

505.8
overview
Male, age 65
Small intestine sample 232
nTPM: 522.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 580.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 473.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 447.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

861.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 861.8
Samples: 207

Max nTPM: 1687.0
Min nTPM: 440.8
Std nTPM: 236.6
Median nTPM: 827.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1687.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1658.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1554.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1543.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1530.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1511.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1392.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1387.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1368.0
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1365.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1321.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1320.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1297.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1277.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1248.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 1239.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1219.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1207.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1205.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1203.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1164.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1158.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1153.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1145.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1144.2
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1135.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1131.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1120.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1101.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1097.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1093.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1087.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1083.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1077.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1073.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1072.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1066.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1064.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1056.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1054.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1051.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1048.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1040.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1036.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1035.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1021.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1015.6
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1013.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1010.3
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1008.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 997.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 997.6
GTEX-1192X-2526-SM-59868 50-59 years, male 992.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 979.0
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 978.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 967.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 967.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 967.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 966.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 966.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 966.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 947.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 940.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 940.0
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 934.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 932.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 931.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 924.4
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 919.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 919.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 914.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 909.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 909.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 908.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 905.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 900.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 897.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 893.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 889.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 889.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 886.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 885.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 881.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 881.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 871.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 870.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 860.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 859.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 859.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 857.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 852.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 849.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 845.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 842.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 842.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 839.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 833.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 831.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 831.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 830.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 829.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 828.8
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 828.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 827.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 825.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 824.2
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 815.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 812.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 802.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 795.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 792.7
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 792.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 792.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 790.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 786.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 776.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 774.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 774.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 767.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 756.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 751.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 751.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 751.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 747.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 747.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 743.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 742.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 741.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 740.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 738.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 738.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 737.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 731.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 728.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 724.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 721.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 720.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 719.8
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 718.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 718.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 717.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 715.1
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 713.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 708.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 708.3
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 708.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 707.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 707.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 706.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 705.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 704.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 701.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 700.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 697.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 696.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 692.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 690.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 690.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 686.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 685.0
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 684.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 678.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 678.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 674.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 665.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 665.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 655.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 653.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 649.6
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 648.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 647.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 645.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 645.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 643.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 642.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 641.7
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 638.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 637.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 635.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 634.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 630.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 626.7
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 624.1
GTEX-178AV-1226-SM-GOR11 40-49 years, male 618.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 618.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 609.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 606.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 599.5
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 597.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 597.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 597.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 595.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 593.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 578.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 571.5
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 571.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 570.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 563.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 562.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 555.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 550.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 550.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 538.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 498.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 488.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 465.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 440.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 163.4
FF:10024-101D6 15,40,85 years, mixed 163.4

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