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  • TOMM6
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:199.8 nTPM
HPA Brain:71.8 nTPM
GTEx:199.8 nTPM
FANTOM5:82.1 Scaled Tags Per Million
Mouse:176.4 nTPM
Allen mouse:12.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.8
Sample id Sample description nTPM
Amygdala
nTPM: 71.8
2695 Female, age 67, right hemisphere 78.1
2514 Male, age 75, right hemisphere 73.9
2814 Male, age 76, right hemisphere 73.9
1987 Female, age 91, left hemisphere 71.8
2517 Female, age 94, left hemisphere 61.3
Basal amygdala
nTPM: 61.5
2609 Male, age 75, right hemisphere 77.5
2110 Male, age 80, left hemisphere 64.2
1955 Male, age 76, both hemispheres 62.9
2243 Female, age 91, right hemisphere 61.0
2685 Female, age 94, left hemisphere 59.0
2827 Female, age 67, right hemisphere 44.6
Central amygdala
nTPM: 64.1
2515 Male, age 75, right hemisphere 76.1
1905 Male, age 76, both hemispheres 70.7
2701 Female, age 91, right hemisphere 62.6
2239 Male, age 80, left hemisphere 56.6
2826 Female, age 94, left hemisphere 54.7
Corticomedial amygdala
nTPM: 63.2
2428 Male, age 75, right hemisphere 77.1
2829 Male, age 80, left hemisphere 74.4
2429 Female, age 94, left hemisphere 69.1
2240 Male, age 76, both hemispheres 62.1
2242 Female, age 91, right hemisphere 56.4
2535 Female, age 67, right hemisphere 40.0
Lateral amygdala
nTPM: 58.2
2516 Male, age 75, right hemisphere 76.8
1883 Male, age 76, both hemispheres 66.2
2534 Female, age 94, left hemisphere 58.5
2256 Male, age 80, left hemisphere 54.4
2255 Female, age 91, right hemisphere 49.3
2830 Female, age 67, right hemisphere 44.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 199.8
Samples: 181

Max nTPM: 577.1
Min nTPM: 122.2
Std nTPM: 55.3
Median nTPM: 189.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 577.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 441.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 412.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 403.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 334.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 326.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 299.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 291.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 280.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 277.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 277.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 276.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 273.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 273.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 272.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 268.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 262.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 253.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 252.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 248.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 246.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 243.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 241.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 240.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 236.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 236.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 234.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 233.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 233.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 233.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 233.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 229.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 229.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 229.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 228.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 227.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 224.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 220.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 220.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 220.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 220.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 219.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 218.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 218.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 218.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 217.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 216.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 215.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 215.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 214.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 212.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 211.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 210.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 207.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 207.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 206.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 206.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 205.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 204.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 203.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 202.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 201.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 201.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 201.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 201.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 201.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 200.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 200.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 200.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 200.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 200.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 198.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 198.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 198.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 198.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 197.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 194.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 194.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 194.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 193.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 192.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 192.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 192.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 191.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 190.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 190.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 190.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 189.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 189.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 189.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 189.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 189.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 188.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 187.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 187.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 187.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 186.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 186.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 184.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 184.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 184.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 183.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 182.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 182.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 180.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 179.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 179.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 178.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 178.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 177.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 177.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 177.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 177.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 176.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 176.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 176.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 175.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 174.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 174.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 173.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 173.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 172.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 172.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 171.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 171.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 170.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 169.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 168.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 168.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 168.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 167.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 166.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 166.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 166.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 165.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 165.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 165.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 165.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 164.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 164.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 163.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 163.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 163.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 162.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 162.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 162.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 162.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 161.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 161.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 160.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 158.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 158.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 158.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 157.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 157.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 155.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 154.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 154.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 154.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 153.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 152.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 151.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 151.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 150.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 150.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 149.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 149.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 147.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 147.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 146.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 143.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 142.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 141.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 137.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 136.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 133.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 133.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 123.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 122.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.1
FF:10151-102I7 76 years, female 82.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 176.4
Samples: 4

Max nTPM: 194.8
Min nTPM: 166.7
Sample A Male 170.1
Sample B Male 173.9
Sample C Female 194.8
Sample D Female 166.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.8
678717 Antisense, RP_040914_02_G10, Mouse strain C57BL/6J (56 days, male) 12.8

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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