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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
82.1
nTPM
Monaco:
502.4
nTPM
Schmiedel:
70.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.1
HPA sample
nTPM
gdT-cell nTPM: 0.5
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.0
P10809_1007
0.8
P10809_1022
1.6
P10809_1041
0.0
P10809_1060
0.0
P10809_1077
0.0
P10809_1098
0.5
MAIT T-cell nTPM: 3.2
Samples: 6
Max nTPM: 7.6
Min nTPM: 0.0
P10809_1006
0.0
P10809_1024
7.6
P10809_1043
0.0
P10809_1062
4.5
P10809_1083
0.0
P10809_1097
7.1
Memory CD4 T-cell nTPM: 51.7
Samples: 6
Max nTPM: 71.0
Min nTPM: 36.2
P10809_1014
49.2
P10809_1026
71.0
P10809_1045
57.9
P10809_1064
36.2
P10809_1086
38.7
P10809_1113
57.4
Memory CD8 T-cell nTPM: 59.0
Samples: 5
Max nTPM: 115.6
Min nTPM: 14.4
P10809_1012
49.5
P10809_1027
115.6
P10809_1046
52.8
P10809_1065
14.4
P10809_1111
62.5
Naive CD4 T-cell nTPM: 60.6
Samples: 6
Max nTPM: 81.4
Min nTPM: 41.8
P10809_1015
41.8
P10809_1030
74.8
P10809_1049
81.4
P10809_1068
42.5
P10809_1085
64.9
P10809_1112
58.2
Naive CD8 T-cell nTPM: 59.3
Samples: 6
Max nTPM: 147.9
Min nTPM: 5.7
P10809_1016
50.9
P10809_1031
72.6
P10809_1050
147.9
P10809_1069
15.0
P10809_1087
5.7
P10809_1110
63.8
T-reg nTPM: 82.2
Samples: 6
Max nTPM: 135.0
Min nTPM: 37.1
P10809_1018
37.1
P10809_1037
135.0
P10809_1056
74.6
P10809_1075
50.5
P10809_1094
106.1
P10809_1106
89.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
502.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 502.5
Samples: 4
Max nTPM: 1755.7
Min nTPM: 72.3
RHH5202_R3573
84.5
RHH5230_R3602
1755.7
RHH5259_R3631
72.3
RHH5288_R3660
97.3
Effector memory CD8 T-cell nTPM: 56.7
Samples: 4
Max nTPM: 81.4
Min nTPM: 27.3
RHH5203_R3574
80.2
RHH5231_R3603
37.7
RHH5260_R3632
27.3
RHH5289_R3661
81.4
MAIT T-cell nTPM: 1.8
Samples: 4
Max nTPM: 3.4
Min nTPM: 0.0
RHH5233_R3605
0.9
RHH5205_R3576
0.0
RHH5262_R3634
3.4
RHH5297_R3663
2.8
Memory CD4 T-cell TFH nTPM: 102.4
Samples: 4
Max nTPM: 133.5
Min nTPM: 70.1
RHH5300_R3666
106.7
RHH5236_R3608
133.5
RHH5265_R3637
99.2
RHH5208_R3579
70.1
Memory CD4 T-cell Th1 nTPM: 76.4
Samples: 4
Max nTPM: 101.6
Min nTPM: 64.5
RHH5210_R3581
64.5
RHH5302_R3668
101.6
RHH5238_R3610
72.6
RHH5267_R3639
67.0
Memory CD4 T-cell Th1/Th17 nTPM: 81.2
Samples: 4
Max nTPM: 136.8
Min nTPM: 56.0
RHH5303_R3669
136.8
RHH5211_R3582
74.7
RHH5239_R3611
57.1
RHH5268_R3640
56.0
Memory CD4 T-cell Th17 nTPM: 75.6
Samples: 4
Max nTPM: 87.4
Min nTPM: 54.3
RHH5304_R3670
83.7
RHH5212_R3583
87.4
RHH5240_R3612
77.1
RHH5269_R3641
54.3
Memory CD4 T-cell Th2 nTPM: 75.2
Samples: 4
Max nTPM: 116.0
Min nTPM: 49.5
RHH5305_R3671
70.7
RHH5213_R3584
49.5
RHH5241_R3613
116.0
RHH5270_R3642
64.7
Naive CD4 T-cell nTPM: 95.2
Samples: 4
Max nTPM: 112.4
Min nTPM: 79.0
RHH5306_R3672
105.2
RHH5214_R3585
84.0
RHH5242_R3614
112.4
RHH5271_R3643
79.0
Naive CD8 T-cell nTPM: 96.5
Samples: 4
Max nTPM: 131.2
Min nTPM: 57.9
RHH5201_R3572
99.5
RHH5229_R3601
57.9
RHH5258_R3630
131.2
RHH5287_R3659
97.5
Non-Vd2 gdTCR nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5235_R3607
0.0
RHH5264_R3636
0.0
RHH5207_R3578
0.0
RHH5299_R3665
0.0
T-reg nTPM: 84.8
Samples: 4
Max nTPM: 146.7
Min nTPM: 41.5
RHH5301_R3667
97.8
RHH5237_R3609
146.7
RHH5266_R3638
41.5
RHH5209_R3580
53.0
Terminal effector memory CD4 T-cell nTPM: 3.9
Samples: 2
Max nTPM: 7.7
Min nTPM: 0.0
RHH5243_R3615
0.0
RHH5272_R3644
7.7
Terminal effector memory CD8 T-cell nTPM: 156.0
Samples: 4
Max nTPM: 562.3
Min nTPM: 7.3
RHH5232_R3604
45.2
RHH5204_R3575
7.3
RHH5261_R3633
9.2
RHH5296_R3662
562.3
Vd2 gdTCR nTPM: 5.1
Samples: 4
Max nTPM: 13.8
Min nTPM: 0.0
RHH5234_R3606
0.0
RHH5206_R3577
5.4
RHH5263_R3635
13.8
RHH5298_R3664
1.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
